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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g23920 FvH4_2g23920 |
| malus_domestica | MD11G1308600.v1.1 |
| prunus_persica | Prupe.8G262800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0291551 |
| rosa_laevigata | RLG00000012108 |
| rosa_multiflora | Rmu_sc0002226.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00175980 |
| rosa_rugosa | Rorug06G0220200 |
| rosa_samantha | Rh6AG332400 Rh6BG339300 Rh6CG345600 Rh6DG332900 |
| rosa_wichuraiana | Rw6G028870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1216 |
| AatII | GACGTC | 1 cut(s) | 471 |
| Acc36I | ACCTGC | 2 cut(s) | 1216, 1589 |
| AccB1I | GGYRCC | 1 cut(s) | 1060 |
| AccII | CGCG | 5 cut(s) | 219, 396, 522, 530, 4166 |
| AclWI | GGATC | 2 cut(s) | 554, 1732 |
| AcoI | YGGCCR | 1 cut(s) | 525 |
| AcuI | CTGAAG | 8 cut(s) | 260, 437, 1350, 1625, 1781, 1965, 2436, 3525 |
| AcyI | GRCGYC | 3 cut(s) | 222, 399, 468 |
| AdeI | CACNNNGTG | 2 cut(s) | 492, 1867 |
| AflIII | ACRYGT | 3 cut(s) | 1436, 2824, 3913 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 472 |
| AjnI | CCWGG | 8 cut(s) | 80, 1063, 1381, 2527, 2548, 2967, 3616, 3637 |
| Alw21I | GWGCWC | 3 cut(s) | 693, 998, 1377 |
| Alw44I | GTGCAC | 1 cut(s) | 689 |
| AlwI | GGATC | 2 cut(s) | 554, 1732 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1340 |
| Ama87I | CYCGRG | 3 cut(s) | 2852, 3415, 3941 |
| AoxI | GGCC | 7 cut(s) | 457, 525, 1226, 1700, 2970, 2983, 4072 |
| ApaLI | GTGCAC | 1 cut(s) | 689 |
| ApeKI | GCWGC | 5 cut(s) | 1334, 2045, 3018, 3134, 4107 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2405, 2437, 3494, 3526 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1143, 2136, 3225 |
| AspLEI | GCGC | 6 cut(s) | 127, 304, 522, 2967, 4056, 4166 |
| AspS9I | GGNCC | 7 cut(s) | 47, 1155, 1227, 1385, 1558, 2984, 4073 |
| AsuC2I | CCSGG | 7 cut(s) | 2328, 2853, 2854, 3416, 3417, 3942, 3943 |
| AvaI | CYCGRG | 3 cut(s) | 2852, 3415, 3941 |
| AvaII | GGWCC | 4 cut(s) | 47, 1155, 1385, 1558 |
| AxyI | CCTNAGG | 2 cut(s) | 1989, 3078 |
| BaeGI | GKGCMC | 2 cut(s) | 693, 1063 |
| BanI | GGYRCC | 1 cut(s) | 1060 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2344, 2376, 3433, 3465 |
| BbsI | GAAGAC | 3 cut(s) | 1787, 1987, 3076 |
| Bbv12I | GWGCWC | 3 cut(s) | 693, 998, 1377 |
| BbvCI | CCTCAGC | 2 cut(s) | 741, 804 |
| BbvI | GCAGC | 5 cut(s) | 1346, 2057, 3030, 3146, 4119 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 680, 714 |
| BciT130I | CCWGG | 8 cut(s) | 82, 1065, 1383, 2529, 2550, 2969, 3618, 3639 |
| BciVI | GTATCC | 1 cut(s) | 3638 |
| BclI | TGATCA | 1 cut(s) | 1849 |
| BcnI | CCSGG | 7 cut(s) | 2328, 2853, 2854, 3416, 3417, 3942, 3943 |
| BfmI | CTRYAG | 4 cut(s) | 1682, 2112, 3201, 4175 |
| BfoI | RGCGCY | 2 cut(s) | 128, 305 |
| BfuAI | ACCTGC | 2 cut(s) | 1216, 1589 |
| BfuI | GTATCC | 1 cut(s) | 3638 |
| BglII | AGATCT | 3 cut(s) | 1322, 2083, 3172 |
| BisI | GCNGC | 9 cut(s) | 123, 300, 528, 531, 1335, 2046, 3019, 3135, 4108 |
| BlsI | GCNGC | 9 cut(s) | 124, 301, 529, 532, 1336, 2047, 3020, 3136, 4109 |
| BmcAI | AGTACT | 3 cut(s) | 679, 2449, 3538 |
| Bme18I | GGWCC | 4 cut(s) | 47, 1155, 1385, 1558 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 472 |
| BmeT110I | CYCGRG | 3 cut(s) | 2852, 3415, 3941 |
| BmgT120I | GGNCC | 7 cut(s) | 47, 1155, 1227, 1385, 1558, 2984, 4073 |
| BmiI | GGNNCC | 8 cut(s) | 1062, 1156, 2066, 2986, 3005, 3155, 4075, 4094 |
| BmrI | ACTGGG | 2 cut(s) | 3022, 4111 |
| BmuI | ACTGGG | 2 cut(s) | 3022, 4111 |
| BpiI | GAAGAC | 3 cut(s) | 1787, 1987, 3076 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2463, 2495, 3552, 3584, 3615, 3647 |
| BpmI | CTGGAG | 1 cut(s) | 64 |
| Bpu10I | CCTNAGC | 2 cut(s) | 741, 804 |
| BpuMI | CCSGG | 7 cut(s) | 2328, 2853, 2854, 3416, 3417, 3942, 3943 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2082, 3171 |
| BsaHI | GRCGYC | 3 cut(s) | 222, 399, 468 |
| BsaI | GGTCTC | 5 cut(s) | 62, 2336, 2780, 3425, 3869 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2526, 2556 |
| Bse1I | ACTGG | 5 cut(s) | 208, 385, 472, 3028, 4117 |
| Bse21I | CCTNAGG | 2 cut(s) | 1989, 3078 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2082, 3171 |
| BseBI | CCWGG | 8 cut(s) | 82, 1065, 1383, 2529, 2550, 2969, 3618, 3639 |
| BseJI | GATNNNNATC | 2 cut(s) | 2082, 3171 |
| BseMII | CTCAG | 8 cut(s) | 732, 795, 1362, 1624, 1672, 1789, 2003, 3092 |
| BseNI | ACTGG | 5 cut(s) | 208, 385, 472, 3028, 4117 |
| BseRI | GAGGAG | 8 cut(s) | 67, 625, 1478, 1560, 1763, 1931, 2724, 3813 |
| BseSI | GKGCMC | 2 cut(s) | 693, 1063 |
| BseXI | GCAGC | 5 cut(s) | 1346, 2057, 3030, 3146, 4119 |
| BseYI | CCCAGC | 4 cut(s) | 533, 949, 2989, 4078 |
| Bsh1236I | CGCG | 5 cut(s) | 219, 396, 522, 530, 4166 |
| BshFI | GGCC | 7 cut(s) | 459, 527, 1228, 1702, 2972, 2985, 4074 |
| BshNI | GGYRCC | 1 cut(s) | 1060 |
| BsiHKAI | GWGCWC | 3 cut(s) | 693, 998, 1377 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2852, 3415, 3941 |
| BsiSI | CCGG | 6 cut(s) | 2034, 2327, 2853, 3123, 3416, 3942 |
| BslFI | GGGAC | 5 cut(s) | 122, 299, 1801, 2795, 3884 |
| BsmFI | GGGAC | 5 cut(s) | 122, 299, 1801, 2795, 3884 |
| BsmI | GAATGC | 1 cut(s) | 1206 |
| BsnI | GGCC | 7 cut(s) | 459, 527, 1228, 1702, 2972, 2985, 4074 |
| Bso31I | GGTCTC | 5 cut(s) | 62, 2336, 2780, 3425, 3869 |
| BsoBI | CYCGRG | 3 cut(s) | 2852, 3415, 3941 |
| Bsp1286I | GDGCHC | 4 cut(s) | 693, 998, 1063, 1377 |
| Bsp143I | GATC | 8 cut(s) | 546, 1322, 1724, 1849, 2083, 2104, 3172, 3193 |
| Bsp19I | CCATGG | 1 cut(s) | 1783 |
| BspANI | GGCC | 7 cut(s) | 459, 527, 1228, 1702, 2972, 2985, 4074 |
| BspCNI | CTCAG | 8 cut(s) | 733, 796, 1363, 1623, 1671, 1788, 2002, 3091 |
| BspFNI | CGCG | 5 cut(s) | 219, 396, 522, 530, 4166 |
| BspLI | GGNNCC | 8 cut(s) | 1062, 1156, 2066, 2986, 3005, 3155, 4075, 4094 |
| BspMAI | CTGCAG | 1 cut(s) | 1686 |
| BspMI | ACCTGC | 2 cut(s) | 1216, 1589 |
| BspPI | GGATC | 2 cut(s) | 554, 1732 |
| BspT107I | GGYRCC | 1 cut(s) | 1060 |
| BspTNI | GGTCTC | 5 cut(s) | 62, 2336, 2780, 3425, 3869 |
| BsrI | ACTGG | 5 cut(s) | 208, 385, 472, 3028, 4117 |
| BssMI | GATC | 8 cut(s) | 546, 1322, 1724, 1849, 2083, 2104, 3172, 3193 |
| BssNI | GRCGYC | 3 cut(s) | 222, 399, 468 |
| BssT1I | CCWWGG | 6 cut(s) | 567, 1783, 2280, 2768, 3369, 3857 |
| Bst2UI | CCWGG | 8 cut(s) | 82, 1065, 1383, 2529, 2550, 2969, 3618, 3639 |
| Bst6I | CTCTTC | 8 cut(s) | 69, 759, 776, 822, 839, 971, 2743, 3832 |
| BstACI | GRCGYC | 3 cut(s) | 222, 399, 468 |
| BstC8I | GCNNGC | 4 cut(s) | 2189, 2756, 3278, 3845 |
| BstDSI | CCRYGG | 2 cut(s) | 528, 1783 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2532, 3621 |
| BstFNI | CGCG | 5 cut(s) | 219, 396, 522, 530, 4166 |
| BstH2I | RGCGCY | 2 cut(s) | 128, 305 |
| BstHHI | GCGC | 6 cut(s) | 127, 304, 522, 2967, 4056, 4166 |
| BstKTI | GATC | 8 cut(s) | 549, 1325, 1727, 1852, 2086, 2107, 3175, 3196 |
| BstMBI | GATC | 8 cut(s) | 546, 1322, 1724, 1849, 2083, 2104, 3172, 3193 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1085, 1412, 2054, 3143 |
| BstNI | CCWGG | 8 cut(s) | 82, 1065, 1383, 2529, 2550, 2969, 3618, 3639 |
| BstNSI | RCATGY | 2 cut(s) | 1440, 1657 |
| BstSFI | CTRYAG | 4 cut(s) | 1682, 2112, 3201, 4175 |
| BstSLI | GKGCMC | 2 cut(s) | 693, 1063 |
| BstUI | CGCG | 5 cut(s) | 219, 396, 522, 530, 4166 |
| BstV1I | GCAGC | 5 cut(s) | 1346, 2057, 3030, 3146, 4119 |
| BstV2I | GAAGAC | 3 cut(s) | 1787, 1987, 3076 |
| BstX2I | RGATCY | 3 cut(s) | 1322, 2083, 3172 |
| BstYI | RGATCY | 3 cut(s) | 1322, 2083, 3172 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1989, 3078 |
| BsuI | GTATCC | 1 cut(s) | 3638 |
| BsuRI | GGCC | 7 cut(s) | 459, 527, 1228, 1702, 2972, 2985, 4074 |
| BtgI | CCRYGG | 2 cut(s) | 528, 1783 |
| BtsI | GCAGTG | 2 cut(s) | 1966, 3055 |
| BtsIMutI | CAGTG | 6 cut(s) | 1643, 1783, 1966, 2129, 3055, 3218 |
| BveI | ACCTGC | 2 cut(s) | 1216, 1589 |
| Cac8I | GCNNGC | 4 cut(s) | 2189, 2756, 3278, 3845 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1340 |
| CfoI | GCGC | 6 cut(s) | 127, 304, 522, 2967, 4056, 4166 |
| Cfr13I | GGNCC | 7 cut(s) | 47, 1155, 1227, 1385, 1558, 2984, 4073 |
| Cfr42I | CCGCGG | 1 cut(s) | 531 |
| Cfr9I | CCCGGG | 3 cut(s) | 2852, 3415, 3941 |
| CseI | GACGC | 4 cut(s) | 230, 407, 2645, 3734 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 652, 687, 1882, 1917 |
| DpnI | GATC | 8 cut(s) | 548, 1324, 1726, 1851, 2085, 2106, 3174, 3195 |
| DpnII | GATC | 8 cut(s) | 546, 1322, 1724, 1849, 2083, 2104, 3172, 3193 |
| DraI | TTTAAA | 1 cut(s) | 15 |
| DraIII | CACNNNGTG | 2 cut(s) | 492, 1867 |
| DriI | GACNNNNNGTC | 1 cut(s) | 472 |
| EaeI | YGGCCR | 1 cut(s) | 525 |
| Eam1104I | CTCTTC | 8 cut(s) | 69, 759, 776, 822, 839, 971, 2743, 3832 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 472 |
| EarI | CTCTTC | 8 cut(s) | 69, 759, 776, 822, 839, 971, 2743, 3832 |
| EciI | GGCGGA | 3 cut(s) | 87, 2547, 3636 |
| Eco130I | CCWWGG | 6 cut(s) | 567, 1783, 2280, 2768, 3369, 3857 |
| Eco31I | GGTCTC | 5 cut(s) | 62, 2336, 2780, 3425, 3869 |
| Eco47I | GGWCC | 4 cut(s) | 47, 1155, 1385, 1558 |
| Eco57I | CTGAAG | 8 cut(s) | 260, 437, 1350, 1625, 1781, 1965, 2436, 3525 |
| Eco81I | CCTNAGG | 2 cut(s) | 1989, 3078 |
| Eco88I | CYCGRG | 3 cut(s) | 2852, 3415, 3941 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2532, 3621 |
| EcoRII | CCWGG | 8 cut(s) | 80, 1063, 1381, 2527, 2548, 2967, 3616, 3637 |
| EcoT14I | CCWWGG | 6 cut(s) | 567, 1783, 2280, 2768, 3369, 3857 |
| ErhI | CCWWGG | 6 cut(s) | 567, 1783, 2280, 2768, 3369, 3857 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1131, 1163, 1830, 1862 |
| FaqI | GGGAC | 5 cut(s) | 122, 299, 1801, 2795, 3884 |
| FauI | CCCGC | 3 cut(s) | 148, 325, 901 |
| FauNDI | CATATG | 2 cut(s) | 2142, 3231 |
| FbaI | TGATCA | 1 cut(s) | 1849 |
| Fnu4HI | GCNGC | 9 cut(s) | 123, 300, 528, 531, 1335, 2046, 3019, 3135, 4108 |
| Fsp4HI | GCNGC | 9 cut(s) | 123, 300, 528, 531, 1335, 2046, 3019, 3135, 4108 |
| GlaI | GCGC | 6 cut(s) | 126, 303, 521, 2966, 4055, 4165 |
| GluI | GCNGC | 9 cut(s) | 123, 300, 528, 531, 1335, 2046, 3019, 3135, 4108 |
| GsaI | CCCAGC | 4 cut(s) | 537, 953, 2993, 4082 |
| GsuI | CTGGAG | 1 cut(s) | 64 |
| HaeII | RGCGCY | 2 cut(s) | 128, 305 |
| HaeIII | GGCC | 7 cut(s) | 459, 527, 1228, 1702, 2972, 2985, 4074 |
| HapII | CCGG | 6 cut(s) | 2034, 2327, 2853, 3123, 3416, 3942 |
| HgaI | GACGC | 4 cut(s) | 230, 407, 2645, 3734 |
| HhaI | GCGC | 6 cut(s) | 127, 304, 522, 2967, 4056, 4166 |
| Hin1I | GRCGYC | 3 cut(s) | 222, 399, 468 |
| Hin6I | GCGC | 6 cut(s) | 125, 302, 520, 2965, 4054, 4164 |
| HinP1I | GCGC | 6 cut(s) | 125, 302, 520, 2965, 4054, 4164 |
| HincII | GTYRAC | 2 cut(s) | 560, 1875 |
| HindII | GTYRAC | 2 cut(s) | 560, 1875 |
| HpaII | CCGG | 6 cut(s) | 2034, 2327, 2853, 3123, 3416, 3942 |
| Hpy166II | GTNNAC | 8 cut(s) | 560, 691, 1247, 1664, 1760, 1875, 1970, 3059 |
| Hpy188III | TCNNGA | 6 cut(s) | 1197, 1799, 2312, 2956, 3401, 4045 |
| Hpy8I | GTNNAC | 8 cut(s) | 560, 691, 1247, 1664, 1760, 1875, 1970, 3059 |
| Hpy99I | CGWCG | 7 cut(s) | 224, 251, 401, 428, 470, 2313, 3402 |
| HpyAV | CCTTC | 9 cut(s) | 38, 387, 1227, 1440, 1571, 2088, 2681, 3177, 3770 |
| HpyCH4IV | ACGT | 5 cut(s) | 468, 1072, 1279, 2824, 3913 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1085, 1412, 2054, 3143 |
| HpySE526I | ACGT | 5 cut(s) | 468, 1072, 1279, 2824, 3913 |
| Hsp92I | GRCGYC | 3 cut(s) | 222, 399, 468 |
| HspAI | GCGC | 6 cut(s) | 125, 302, 520, 2965, 4054, 4164 |
| Ksp22I | TGATCA | 1 cut(s) | 1849 |
| KspI | CCGCGG | 1 cut(s) | 531 |
| Kzo9I | GATC | 8 cut(s) | 546, 1322, 1724, 1849, 2083, 2104, 3172, 3193 |
| LmnI | GCTCC | 7 cut(s) | 571, 1001, 1573, 1683, 1904, 2070, 3159 |
| Lsp1109I | GCAGC | 5 cut(s) | 1346, 2057, 3030, 3146, 4119 |
| MaeII | ACGT | 5 cut(s) | 468, 1072, 1279, 2824, 3913 |
| MalI | GATC | 8 cut(s) | 548, 1324, 1726, 1851, 2085, 2106, 3174, 3195 |
| MboI | GATC | 8 cut(s) | 546, 1322, 1724, 1849, 2083, 2104, 3172, 3193 |
| MflI | RGATCY | 3 cut(s) | 1322, 2083, 3172 |
| MhlI | GDGCHC | 4 cut(s) | 693, 998, 1063, 1377 |
| MlyI | GAGTC | 4 cut(s) | 565, 1115, 2531, 3620 |
| MmeI | TCCRAC | 7 cut(s) | 130, 507, 1933, 2048, 3022, 3137, 3934 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1143, 2136, 3225 |
| MslI | CAYNNNNRTG | 6 cut(s) | 2259, 2424, 2949, 3348, 3513, 4038 |
| MspA1I | CMGCKG | 1 cut(s) | 530 |
| MspI | CCGG | 6 cut(s) | 2034, 2327, 2853, 3123, 3416, 3942 |
| Mva1269I | GAATGC | 1 cut(s) | 1206 |
| MvaI | CCWGG | 8 cut(s) | 82, 1065, 1383, 2529, 2550, 2969, 3618, 3639 |
| MvnI | CGCG | 5 cut(s) | 219, 396, 522, 530, 4166 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1085, 1412, 2054, 3143 |
| NciI | CCSGG | 7 cut(s) | 2328, 2853, 2854, 3416, 3417, 3942, 3943 |
| NcoI | CCATGG | 1 cut(s) | 1783 |
| NdeI | CATATG | 2 cut(s) | 2142, 3231 |
| NdeII | GATC | 8 cut(s) | 546, 1322, 1724, 1849, 2083, 2104, 3172, 3193 |
| NlaIV | GGNNCC | 8 cut(s) | 1062, 1156, 2066, 2986, 3005, 3155, 4075, 4094 |
| NmeAIII | GCCGAG | 4 cut(s) | 250, 258, 427, 435 |
| NspI | RCATGY | 2 cut(s) | 1440, 1657 |
| PaqCI | CACCTGC | 1 cut(s) | 1216 |
| PciI | ACATGT | 1 cut(s) | 1436 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 462 |
| PctI | GAATGC | 1 cut(s) | 1206 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1143, 2136, 3225 |
| PfeI | GAWTC | 7 cut(s) | 1082, 2030, 2461, 2896, 3119, 3550, 3985 |
| PfoI | TCCNGGA | 2 cut(s) | 2548, 3637 |
| PkrI | GCNGC | 9 cut(s) | 124, 301, 529, 532, 1336, 2047, 3020, 3136, 4109 |
| PleI | GAGTC | 4 cut(s) | 564, 1114, 2530, 3619 |
| PpsI | GAGTC | 4 cut(s) | 564, 1114, 2530, 3619 |
| PscI | ACATGT | 1 cut(s) | 1436 |
| Psp6I | CCWGG | 8 cut(s) | 80, 1063, 1381, 2527, 2548, 2967, 3616, 3637 |
| PspFI | CCCAGC | 4 cut(s) | 533, 949, 2989, 4078 |
| PspGI | CCWGG | 8 cut(s) | 80, 1063, 1381, 2527, 2548, 2967, 3616, 3637 |
| PspN4I | GGNNCC | 8 cut(s) | 1062, 1156, 2066, 2986, 3005, 3155, 4075, 4094 |
| PspPI | GGNCC | 7 cut(s) | 47, 1155, 1227, 1385, 1558, 2984, 4073 |
| PstI | CTGCAG | 1 cut(s) | 1686 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1340 |
| PsuI | RGATCY | 3 cut(s) | 1322, 2083, 3172 |
| RseI | CAYNNNNRTG | 6 cut(s) | 2259, 2424, 2949, 3348, 3513, 4038 |
| SacII | CCGCGG | 1 cut(s) | 531 |
| SatI | GCNGC | 9 cut(s) | 123, 300, 528, 531, 1335, 2046, 3019, 3135, 4108 |
| Sau3AI | GATC | 8 cut(s) | 546, 1322, 1724, 1849, 2083, 2104, 3172, 3193 |
| Sau96I | GGNCC | 7 cut(s) | 47, 1155, 1227, 1385, 1558, 2984, 4073 |
| ScaI | AGTACT | 3 cut(s) | 679, 2449, 3538 |
| SchI | GAGTC | 4 cut(s) | 565, 1115, 2531, 3620 |
| SduI | GDGCHC | 4 cut(s) | 693, 998, 1063, 1377 |
| SfcI | CTRYAG | 4 cut(s) | 1682, 2112, 3201, 4175 |
| Sfr303I | CCGCGG | 1 cut(s) | 531 |
| SgrBI | CCGCGG | 1 cut(s) | 531 |
| SinI | GGWCC | 4 cut(s) | 47, 1155, 1385, 1558 |
| SmaI | CCCGGG | 3 cut(s) | 2854, 3417, 3943 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 2259, 2424, 2949, 3348, 3513, 4038 |
| SspI | AATATT | 3 cut(s) | 1834, 2005, 3094 |
| StyI | CCWWGG | 6 cut(s) | 567, 1783, 2280, 2768, 3369, 3857 |
| TaiI | ACGT | 5 cut(s) | 471, 1075, 1282, 2827, 3916 |
| TaqI | TCGA | 5 cut(s) | 8, 618, 1051, 2311, 3400 |
| TatI | WGTACW | 6 cut(s) | 677, 1246, 2447, 2890, 3536, 3979 |
| TauI | GCSGC | 4 cut(s) | 125, 302, 530, 533 |
| TfiI | GAWTC | 7 cut(s) | 1082, 2030, 2461, 2896, 3119, 3550, 3985 |
| TscAI | CASTG | 6 cut(s) | 1650, 1783, 1966, 2129, 3055, 3218 |
| TseI | GCWGC | 5 cut(s) | 1334, 2045, 3018, 3134, 4107 |
| TspGWI | ACGGA | 8 cut(s) | 124, 301, 1147, 2649, 2867, 3738, 3956, 4124 |
| TspMI | CCCGGG | 3 cut(s) | 2852, 3415, 3941 |
| TspRI | CASTG | 6 cut(s) | 1650, 1783, 1966, 2129, 3055, 3218 |
| VneI | GTGCAC | 1 cut(s) | 689 |
| VpaK11BI | GGWCC | 4 cut(s) | 47, 1155, 1385, 1558 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2532, 3621 |
| XceI | RCATGY | 2 cut(s) | 1440, 1657 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1718, 2766, 3855, 3917 |
| XmaI | CCCGGG | 3 cut(s) | 2852, 3415, 3941 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1143, 2136, 3225 |
| ZraI | GACGTC | 1 cut(s) | 469 |
| ZrmI | AGTACT | 3 cut(s) | 679, 2449, 3538 |