superfamily. Protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77620 |
| fragaria_vesca | FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 |
| malus_domestica | MD15G1351000.v1.1 |
| prunus_persica | Prupe.1G499900_v2.0.a1 |
| pyrus_communis | pycom15g31350 |
| rosa_chinensis | RchiOBHm_Chr6g0295641 |
| rosa_laevigata | RLG00000011780 |
| rosa_multiflora | Rmu_sc0005000.1_g000001 Rmu_sc0006802.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00172280 |
| rosa_rugosa | Rorug06G0253100 Rorug06G0253100 |
| rosa_samantha | Rh6AG366100 Rh6BG374200 Rh6CG380500 Rh6DG367300 |
| rosa_wichuraiana | Rw6G031950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1071 |
| AatII | GACGTC | 1 cut(s) | 444 |
| Acc36I | ACCTGC | 1 cut(s) | 3364 |
| Acc65I | GGTACC | 1 cut(s) | 2150 |
| AccB1I | GGYRCC | 2 cut(s) | 1806, 2150 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1381 |
| AccBSI | CCGCTC | 2 cut(s) | 234, 3073 |
| AccI | GTMKAC | 4 cut(s) | 56, 818, 2087, 2108 |
| AccII | CGCG | 2 cut(s) | 107, 347 |
| AclWI | GGATC | 2 cut(s) | 86, 3151 |
| AcoI | YGGCCR | 1 cut(s) | 1302 |
| AcsI | RAATTY | 5 cut(s) | 634, 1286, 2369, 2659, 3277 |
| AcuI | CTGAAG | 2 cut(s) | 1781, 2238 |
| AcvI | CACGTG | 1 cut(s) | 3326 |
| AcyI | GRCGYC | 3 cut(s) | 20, 206, 441 |
| AfaI | GTAC | 7 cut(s) | 256, 938, 1366, 2152, 2652, 2850, 3354 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 46, 742, 1381, 1984 |
| AflIII | ACRYGT | 3 cut(s) | 2176, 2385, 3325 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 483, 576, 2467 |
| AjnI | CCWGG | 3 cut(s) | 426, 1895, 2317 |
| AleI | CACNNNNGTG | 1 cut(s) | 2379 |
| Alw21I | GWGCWC | 3 cut(s) | 715, 1218, 2761 |
| Alw26I | GTCTC | 8 cut(s) | 470, 652, 1262, 1472, 1826, 2138, 2475, 2560 |
| AlwI | GGATC | 2 cut(s) | 86, 3151 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1879, 2972, 3437 |
| AoxI | GGCC | 8 cut(s) | 1145, 1302, 1372, 1586, 2052, 2919, 3180, 3216 |
| ApaI | GGGCCC | 1 cut(s) | 1590 |
| ApoI | RAATTY | 5 cut(s) | 634, 1286, 2369, 2659, 3277 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1514, 1546 |
| AseI | ATTAAT | 1 cut(s) | 1065 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3277 |
| Asp718I | GGTACC | 1 cut(s) | 2150 |
| AspLEI | GCGC | 2 cut(s) | 301, 347 |
| AspS9I | GGNCC | 5 cut(s) | 33, 485, 1145, 1586, 1587 |
| AsuC2I | CCSGG | 1 cut(s) | 2170 |
| AsuHPI | GGTGA | 2 cut(s) | 445, 1061 |
| AsuII | TTCGAA | 2 cut(s) | 407, 1030 |
| AvaII | GGWCC | 2 cut(s) | 33, 485 |
| AxyI | CCTNAGG | 1 cut(s) | 3220 |
| BaeGI | GKGCMC | 1 cut(s) | 1590 |
| BalI | TGGCCA | 1 cut(s) | 1304 |
| BanI | GGYRCC | 2 cut(s) | 1806, 2150 |
| BanII | GRGCYC | 6 cut(s) | 620, 1218, 1246, 1590, 2761, 2807 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1444, 1476 |
| BbrPI | CACGTG | 1 cut(s) | 3326 |
| BbsI | GAAGAC | 4 cut(s) | 209, 2475, 2526, 3581 |
| Bbv12I | GWGCWC | 3 cut(s) | 715, 1218, 2761 |
| BbvCI | CCTCAGC | 1 cut(s) | 2830 |
| BccI | CCATC | 8 cut(s) | 1675, 1915, 1954, 2522, 2764, 2871, 3031, 3208 |
| BceAI | ACGGC | 1 cut(s) | 103 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3327, 3361 |
| BciT130I | CCWGG | 3 cut(s) | 428, 1897, 2319 |
| BclI | TGATCA | 1 cut(s) | 2734 |
| BcnI | CCSGG | 1 cut(s) | 2170 |
| BcoDI | GTCTC | 8 cut(s) | 470, 652, 1262, 1472, 1826, 2138, 2475, 2560 |
| BfaI | CTAG | 3 cut(s) | 651, 954, 3551 |
| BfmI | CTRYAG | 4 cut(s) | 1167, 1710, 2247, 3015 |
| BfuAI | ACCTGC | 1 cut(s) | 3364 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 28 |
| BglII | AGATCT | 1 cut(s) | 1024 |
| BlpI | GCTNAGC | 1 cut(s) | 2072 |
| Bme1390I | CCNGG | 4 cut(s) | 428, 1897, 2170, 2319 |
| Bme18I | GGWCC | 2 cut(s) | 33, 485 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 483, 576, 2467 |
| BmgT120I | GGNCC | 5 cut(s) | 33, 485, 1145, 1586, 1587 |
| BmiI | GGNNCC | 6 cut(s) | 111, 1243, 1588, 1808, 2152, 2806 |
| BmrFI | CCNGG | 4 cut(s) | 428, 1897, 2170, 2319 |
| BpiI | GAAGAC | 4 cut(s) | 209, 2475, 2526, 3581 |
| BpmI | CTGGAG | 2 cut(s) | 2340, 3565 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2830 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2072 |
| Bpu14I | TTCGAA | 2 cut(s) | 407, 1030 |
| BpuEI | CTTGAG | 4 cut(s) | 340, 887, 1763, 3409 |
| BpuMI | CCSGG | 1 cut(s) | 2170 |
| BsaAI | YACGTR | 1 cut(s) | 3326 |
| BsaHI | GRCGYC | 3 cut(s) | 20, 206, 441 |
| BsaI | GGTCTC | 2 cut(s) | 652, 1472 |
| BsaJI | CCNNGG | 6 cut(s) | 1483, 1895, 1896, 2168, 2281, 3036 |
| BsaWI | WCCGGW | 2 cut(s) | 211, 2486 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1233, 1263 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 46, 742, 1381, 1984 |
| Bse118I | RCCGGY | 4 cut(s) | 13, 76, 112, 187 |
| Bse1I | ACTGG | 5 cut(s) | 564, 826, 1035, 1453, 3343 |
| Bse21I | CCTNAGG | 1 cut(s) | 3220 |
| Bse3DI | GCAATG | 3 cut(s) | 1844, 2073, 3545 |
| BseBI | CCWGG | 3 cut(s) | 428, 1897, 2319 |
| BseDI | CCNNGG | 6 cut(s) | 1483, 1895, 1896, 2168, 2281, 3036 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 46, 742, 1381, 1984 |
| BseMI | GCAATG | 3 cut(s) | 1844, 2073, 3545 |
| BseNI | ACTGG | 5 cut(s) | 564, 826, 1035, 1453, 3343 |
| BseRI | GAGGAG | 4 cut(s) | 164, 1782, 3025, 3056 |
| BseSI | GKGCMC | 1 cut(s) | 1590 |
| BseYI | CCCAGC | 1 cut(s) | 3099 |
| BsgI | GTGCAG | 3 cut(s) | 71, 2119, 2800 |
| Bsh1236I | CGCG | 2 cut(s) | 107, 347 |
| Bsh1285I | CGRYCG | 1 cut(s) | 245 |
| BshFI | GGCC | 8 cut(s) | 1147, 1304, 1374, 1588, 2054, 2921, 3182, 3218 |
| BshNI | GGYRCC | 2 cut(s) | 1806, 2150 |
| BsiEI | CGRYCG | 1 cut(s) | 245 |
| BsiHKAI | GWGCWC | 3 cut(s) | 715, 1218, 2761 |
| BsiSI | CCGG | 8 cut(s) | 14, 40, 77, 113, 188, 212, 2170, 2487 |
| BslFI | GGGAC | 1 cut(s) | 719 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 46, 742, 1381, 1984 |
| BsmAI | GTCTC | 8 cut(s) | 470, 652, 1262, 1472, 1826, 2138, 2475, 2560 |
| BsmFI | GGGAC | 1 cut(s) | 719 |
| BsmI | GAATGC | 3 cut(s) | 596, 955, 1006 |
| BsnI | GGCC | 8 cut(s) | 1147, 1304, 1374, 1588, 2054, 2921, 3182, 3218 |
| Bso31I | GGTCTC | 2 cut(s) | 652, 1472 |
| Bsp119I | TTCGAA | 2 cut(s) | 407, 1030 |
| Bsp120I | GGGCCC | 1 cut(s) | 1586 |
| Bsp1286I | GDGCHC | 7 cut(s) | 620, 715, 1218, 1246, 1590, 2761, 2807 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2072 |
| Bsp19I | CCATGG | 1 cut(s) | 1483 |
| BspANI | GGCC | 8 cut(s) | 1147, 1304, 1374, 1588, 2054, 2921, 3182, 3218 |
| BspFNI | CGCG | 2 cut(s) | 107, 347 |
| BspHI | TCATGA | 3 cut(s) | 715, 1438, 2092 |
| BspLI | GGNNCC | 6 cut(s) | 111, 1243, 1588, 1808, 2152, 2806 |
| BspMAI | CTGCAG | 2 cut(s) | 1171, 1714 |
| BspMI | ACCTGC | 1 cut(s) | 3364 |
| BspPI | GGATC | 2 cut(s) | 86, 3151 |
| BspQI | GCTCTTC | 2 cut(s) | 224, 3592 |
| BspT104I | TTCGAA | 2 cut(s) | 407, 1030 |
| BspT107I | GGYRCC | 2 cut(s) | 1806, 2150 |
| BspTNI | GGTCTC | 2 cut(s) | 652, 1472 |
| BsrBI | CCGCTC | 2 cut(s) | 234, 3073 |
| BsrDI | GCAATG | 3 cut(s) | 1844, 2073, 3545 |
| BsrFI | RCCGGY | 4 cut(s) | 13, 76, 112, 187 |
| BsrI | ACTGG | 5 cut(s) | 564, 826, 1035, 1453, 3343 |
| BssAI | RCCGGY | 4 cut(s) | 13, 76, 112, 187 |
| BssECI | CCNNGG | 6 cut(s) | 1483, 1895, 1896, 2168, 2281, 3036 |
| BssNAI | GTATAC | 3 cut(s) | 819, 2088, 2109 |
| BssNI | GRCGYC | 3 cut(s) | 20, 206, 441 |
| BssT1I | CCWWGG | 2 cut(s) | 1483, 2281 |
| Bst1107I | GTATAC | 3 cut(s) | 819, 2088, 2109 |
| Bst2UI | CCWGG | 3 cut(s) | 428, 1897, 2319 |
| Bst4CI | ACNGT | 8 cut(s) | 794, 1312, 1544, 1634, 2251, 2354, 2554, 3540 |
| Bst6I | CTCTTC | 5 cut(s) | 123, 224, 2563, 2613, 3592 |
| BstACI | GRCGYC | 3 cut(s) | 20, 206, 441 |
| BstBAI | YACGTR | 1 cut(s) | 3326 |
| BstBI | TTCGAA | 2 cut(s) | 407, 1030 |
| BstC8I | GCNNGC | 5 cut(s) | 15, 173, 189, 596, 1723 |
| BstDSI | CCRYGG | 1 cut(s) | 1483 |
| BstFNI | CGCG | 2 cut(s) | 107, 347 |
| BstHHI | GCGC | 2 cut(s) | 301, 347 |
| BstMAI | GTCTC | 8 cut(s) | 470, 652, 1262, 1472, 1826, 2138, 2475, 2560 |
| BstMCI | CGRYCG | 1 cut(s) | 245 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 19, 28, 58, 423, 456, 1178, 1577, 1718 |
| BstNI | CCWGG | 3 cut(s) | 428, 1897, 2319 |
| BstNSI | RCATGY | 5 cut(s) | 405, 598, 1698, 2180, 2389 |
| BstSCI | CCNGG | 4 cut(s) | 426, 1895, 2168, 2317 |
| BstSFI | CTRYAG | 4 cut(s) | 1167, 1710, 2247, 3015 |
| BstSLI | GKGCMC | 1 cut(s) | 1590 |
| BstUI | CGCG | 2 cut(s) | 107, 347 |
| BstV2I | GAAGAC | 4 cut(s) | 209, 2475, 2526, 3581 |
| BstX2I | RGATCY | 1 cut(s) | 1024 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1312 |
| BstYI | RGATCY | 1 cut(s) | 1024 |
| BstZ17I | GTATAC | 3 cut(s) | 819, 2088, 2109 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3220 |
| BsuRI | GGCC | 8 cut(s) | 1147, 1304, 1374, 1588, 2054, 2921, 3182, 3218 |
| BtgI | CCRYGG | 1 cut(s) | 1483 |
| BtgZI | GCGATG | 1 cut(s) | 893 |
| BtsI | GCAGTG | 2 cut(s) | 2107, 3391 |
| BtsIMutI | CAGTG | 7 cut(s) | 1042, 1225, 1305, 2107, 2845, 3374, 3391 |
| BveI | ACCTGC | 1 cut(s) | 3364 |
| Cac8I | GCNNGC | 5 cut(s) | 15, 173, 189, 596, 1723 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1879, 2972, 3437 |
| CciI | TCATGA | 3 cut(s) | 715, 1438, 2092 |
| CfoI | GCGC | 2 cut(s) | 301, 347 |
| Cfr10I | RCCGGY | 4 cut(s) | 13, 76, 112, 187 |
| Cfr13I | GGNCC | 5 cut(s) | 33, 485, 1145, 1586, 1587 |
| CseI | GACGC | 4 cut(s) | 28, 67, 113, 214 |
| Csp6I | GTAC | 7 cut(s) | 255, 937, 1365, 2151, 2651, 2849, 3353 |
| CviQI | GTAC | 7 cut(s) | 255, 937, 1365, 2151, 2651, 2849, 3353 |
| DriI | GACNNNNNGTC | 3 cut(s) | 483, 576, 2467 |
| EaeI | YGGCCR | 1 cut(s) | 1302 |
| Eam1104I | CTCTTC | 5 cut(s) | 123, 224, 2563, 2613, 3592 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 483, 576, 2467 |
| EarI | CTCTTC | 5 cut(s) | 123, 224, 2563, 2613, 3592 |
| EciI | GGCGGA | 1 cut(s) | 46 |
| Ecl136II | GAGCTC | 2 cut(s) | 1216, 2759 |
| Eco130I | CCWWGG | 2 cut(s) | 1483, 2281 |
| Eco147I | AGGCCT | 1 cut(s) | 2921 |
| Eco24I | GRGCYC | 6 cut(s) | 620, 1218, 1246, 1590, 2761, 2807 |
| Eco31I | GGTCTC | 2 cut(s) | 652, 1472 |
| Eco32I | GATATC | 2 cut(s) | 2243, 2964 |
| Eco47I | GGWCC | 2 cut(s) | 33, 485 |
| Eco53kI | GAGCTC | 2 cut(s) | 1216, 2759 |
| Eco57I | CTGAAG | 2 cut(s) | 1781, 2238 |
| Eco72I | CACGTG | 1 cut(s) | 3326 |
| Eco81I | CCTNAGG | 1 cut(s) | 3220 |
| EcoICRI | GAGCTC | 2 cut(s) | 1216, 2759 |
| EcoRI | GAATTC | 1 cut(s) | 2369 |
| EcoRII | CCWGG | 3 cut(s) | 426, 1895, 2317 |
| EcoRV | GATATC | 2 cut(s) | 2243, 2964 |
| EcoT14I | CCWWGG | 2 cut(s) | 1483, 2281 |
| EcoT22I | ATGCAT | 4 cut(s) | 596, 1696, 1794, 2193 |
| EcoT38I | GRGCYC | 6 cut(s) | 620, 1218, 1246, 1590, 2761, 2807 |
| ErhI | CCWWGG | 2 cut(s) | 1483, 2281 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1331, 1363, 1482, 1514 |
| FaqI | GGGAC | 1 cut(s) | 719 |
| FauI | CCCGC | 1 cut(s) | 152 |
| FauNDI | CATATG | 2 cut(s) | 1837, 2739 |
| FbaI | TGATCA | 1 cut(s) | 2734 |
| FblI | GTMKAC | 4 cut(s) | 56, 818, 2087, 2108 |
| FriOI | GRGCYC | 6 cut(s) | 620, 1218, 1246, 1590, 2761, 2807 |
| FspBI | CTAG | 3 cut(s) | 651, 954, 3551 |
| GlaI | GCGC | 2 cut(s) | 300, 346 |
| GsaI | CCCAGC | 1 cut(s) | 3103 |
| GsuI | CTGGAG | 2 cut(s) | 2340, 3565 |
| HaeIII | GGCC | 8 cut(s) | 1147, 1304, 1374, 1588, 2054, 2921, 3182, 3218 |
| HapII | CCGG | 8 cut(s) | 14, 40, 77, 113, 188, 212, 2170, 2487 |
| HgaI | GACGC | 4 cut(s) | 28, 67, 113, 214 |
| HhaI | GCGC | 2 cut(s) | 301, 347 |
| Hin1I | GRCGYC | 3 cut(s) | 20, 206, 441 |
| Hin6I | GCGC | 2 cut(s) | 299, 345 |
| HinP1I | GCGC | 2 cut(s) | 299, 345 |
| HincII | GTYRAC | 1 cut(s) | 57 |
| HindII | GTYRAC | 1 cut(s) | 57 |
| HindIII | AAGCTT | 2 cut(s) | 457, 1328 |
| HpaII | CCGG | 8 cut(s) | 14, 40, 77, 113, 188, 212, 2170, 2487 |
| HphI | GGTGA | 2 cut(s) | 445, 1061 |
| Hpy166II | GTNNAC | 8 cut(s) | 57, 257, 819, 1252, 1319, 1522, 2088, 2109 |
| Hpy8I | GTNNAC | 8 cut(s) | 57, 257, 819, 1252, 1319, 1522, 2088, 2109 |
| Hpy99I | CGWCG | 4 cut(s) | 22, 61, 265, 446 |
| HpyAV | CCTTC | 9 cut(s) | 94, 368, 372, 466, 609, 1034, 1480, 1961, 3474 |
| HpyCH4III | ACNGT | 8 cut(s) | 794, 1312, 1544, 1634, 2251, 2354, 2554, 3540 |
| HpyCH4IV | ACGT | 2 cut(s) | 441, 3325 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 19, 28, 58, 423, 456, 1178, 1577, 1718 |
| HpySE526I | ACGT | 2 cut(s) | 441, 3325 |
| Hsp92I | GRCGYC | 3 cut(s) | 20, 206, 441 |
| HspAI | GCGC | 2 cut(s) | 299, 345 |
| KpnI | GGTACC | 1 cut(s) | 2154 |
| KroI | GCCGGC | 2 cut(s) | 13, 187 |
| KroNI | GCCGGC | 2 cut(s) | 15, 189 |
| Ksp22I | TGATCA | 1 cut(s) | 2734 |
| LguI | GCTCTTC | 2 cut(s) | 224, 3592 |
| LmnI | GCTCC | 9 cut(s) | 109, 226, 1213, 1241, 2131, 2321, 2810, 2818, 3499 |
| MaeI | CTAG | 3 cut(s) | 651, 954, 3551 |
| MaeII | ACGT | 2 cut(s) | 441, 3325 |
| MaeIII | GTNAC | 9 cut(s) | 1049, 1085, 1138, 1459, 2251, 2381, 2489, 3304, 3321 |
| MbiI | CCGCTC | 2 cut(s) | 234, 3073 |
| MfeI | CAATTG | 3 cut(s) | 1149, 2765, 3093 |
| MflI | RGATCY | 1 cut(s) | 1024 |
| MhlI | GDGCHC | 7 cut(s) | 620, 715, 1218, 1246, 1590, 2761, 2807 |
| MlsI | TGGCCA | 1 cut(s) | 1304 |
| MluNI | TGGCCA | 1 cut(s) | 1304 |
| MlyI | GAGTC | 5 cut(s) | 172, 700, 1072, 1082, 3053 |
| MmeI | TCCRAC | 4 cut(s) | 1214, 2415, 2697, 3214 |
| Mox20I | TGGCCA | 1 cut(s) | 1304 |
| Mph1103I | ATGCAT | 4 cut(s) | 596, 1696, 1794, 2193 |
| MreI | CGCCGGCG | 1 cut(s) | 13 |
| MroNI | GCCGGC | 2 cut(s) | 13, 187 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3277 |
| MscI | TGGCCA | 1 cut(s) | 1304 |
| MseI | TTAA | 7 cut(s) | 216, 632, 1065, 1203, 1952, 2796, 3595 |
| MslI | CAYNNNNRTG | 3 cut(s) | 361, 1228, 2379 |
| Msp20I | TGGCCA | 1 cut(s) | 1304 |
| MspA1I | CMGCKG | 1 cut(s) | 3060 |
| MspI | CCGG | 8 cut(s) | 14, 40, 77, 113, 188, 212, 2170, 2487 |
| MspR9I | CCNGG | 4 cut(s) | 428, 1897, 2170, 2319 |
| MunI | CAATTG | 3 cut(s) | 1149, 2765, 3093 |
| Mva1269I | GAATGC | 3 cut(s) | 596, 955, 1006 |
| MvaI | CCWGG | 3 cut(s) | 428, 1897, 2319 |
| MvnI | CGCG | 2 cut(s) | 107, 347 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 19, 28, 58, 423, 456, 1178, 1577, 1718 |
| NaeI | GCCGGC | 2 cut(s) | 15, 189 |
| NciI | CCSGG | 1 cut(s) | 2170 |
| NcoI | CCATGG | 1 cut(s) | 1483 |
| NdeI | CATATG | 2 cut(s) | 1837, 2739 |
| NgoMIV | GCCGGC | 2 cut(s) | 13, 187 |
| NlaIV | GGNNCC | 6 cut(s) | 111, 1243, 1588, 1808, 2152, 2806 |
| NmuCI | GTSAC | 5 cut(s) | 1049, 1085, 2381, 2489, 3321 |
| NsiI | ATGCAT | 4 cut(s) | 596, 1696, 1794, 2193 |
| NspI | RCATGY | 5 cut(s) | 405, 598, 1698, 2180, 2389 |
| NspV | TTCGAA | 2 cut(s) | 407, 1030 |
| OliI | CACNNNNGTG | 1 cut(s) | 2379 |
| PaeI | GCATGC | 1 cut(s) | 598 |
| PagI | TCATGA | 3 cut(s) | 715, 1438, 2092 |
| PasI | CCCWGGG | 1 cut(s) | 1896 |
| PceI | AGGCCT | 1 cut(s) | 2921 |
| PciI | ACATGT | 2 cut(s) | 2176, 2385 |
| PciSI | GCTCTTC | 2 cut(s) | 224, 3592 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1027, 2878 |
| PctI | GAATGC | 3 cut(s) | 596, 955, 1006 |
| PdiI | GCCGGC | 2 cut(s) | 15, 189 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3277 |
| PflFI | GACNNNGTC | 1 cut(s) | 2479 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1381 |
| PfoI | TCCNGGA | 1 cut(s) | 2317 |
| Ple19I | CGATCG | 1 cut(s) | 245 |
| PleI | GAGTC | 5 cut(s) | 171, 699, 1072, 1082, 3052 |
| PmaCI | CACGTG | 1 cut(s) | 3326 |
| PmlI | CACGTG | 1 cut(s) | 3326 |
| PpsI | GAGTC | 5 cut(s) | 171, 699, 1072, 1082, 3052 |
| Ppu21I | YACGTR | 1 cut(s) | 3326 |
| PscI | ACATGT | 2 cut(s) | 2176, 2385 |
| PshBI | ATTAAT | 1 cut(s) | 1065 |
| PsiI | TTATAA | 1 cut(s) | 1071 |
| Psp124BI | GAGCTC | 2 cut(s) | 1218, 2761 |
| Psp6I | CCWGG | 3 cut(s) | 426, 1895, 2317 |
| PspCI | CACGTG | 1 cut(s) | 3326 |
| PspFI | CCCAGC | 1 cut(s) | 3099 |
| PspGI | CCWGG | 3 cut(s) | 426, 1895, 2317 |
| PspN4I | GGNNCC | 6 cut(s) | 111, 1243, 1588, 1808, 2152, 2806 |
| PspOMI | GGGCCC | 1 cut(s) | 1586 |
| PspPI | GGNCC | 5 cut(s) | 33, 485, 1145, 1586, 1587 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3241, 3273 |
| PstI | CTGCAG | 2 cut(s) | 1171, 1714 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1879, 2972, 3437 |
| PsuI | RGATCY | 1 cut(s) | 1024 |
| PsyI | GACNNNGTC | 1 cut(s) | 2479 |
| PvuI | CGATCG | 1 cut(s) | 245 |
| PvuII | CAGCTG | 1 cut(s) | 3060 |
| RsaI | GTAC | 7 cut(s) | 256, 938, 1366, 2152, 2652, 2850, 3354 |
| RsaNI | GTAC | 7 cut(s) | 255, 937, 1365, 2151, 2651, 2849, 3353 |
| RseI | CAYNNNNRTG | 3 cut(s) | 361, 1228, 2379 |
| SacI | GAGCTC | 2 cut(s) | 1218, 2761 |
| SalI | GTCGAC | 1 cut(s) | 55 |
| SapI | GCTCTTC | 2 cut(s) | 224, 3592 |
| SaqAI | TTAA | 7 cut(s) | 216, 632, 1065, 1203, 1952, 2796, 3595 |
| Sau96I | GGNCC | 5 cut(s) | 33, 485, 1145, 1586, 1587 |
| SchI | GAGTC | 5 cut(s) | 172, 700, 1072, 1082, 3053 |
| ScrFI | CCNGG | 4 cut(s) | 428, 1897, 2170, 2319 |
| SduI | GDGCHC | 7 cut(s) | 620, 715, 1218, 1246, 1590, 2761, 2807 |
| SfcI | CTRYAG | 4 cut(s) | 1167, 1710, 2247, 3015 |
| SfuI | TTCGAA | 2 cut(s) | 407, 1030 |
| SgrAI | CRCCGGYG | 1 cut(s) | 13 |
| SinI | GGWCC | 2 cut(s) | 33, 485 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 361, 1228, 2379 |
| SmlI | CTYRAG | 4 cut(s) | 319, 866, 1742, 3424 |
| SmoI | CTYRAG | 4 cut(s) | 319, 866, 1742, 3424 |
| SphI | GCATGC | 1 cut(s) | 598 |
| SseBI | AGGCCT | 1 cut(s) | 2921 |
| SspI | AATATT | 2 cut(s) | 1596, 2702 |
| SspMI | CTAG | 3 cut(s) | 651, 954, 3551 |
| SstI | GAGCTC | 2 cut(s) | 1218, 2761 |
| StuI | AGGCCT | 1 cut(s) | 2921 |
| StyD4I | CCNGG | 4 cut(s) | 426, 1895, 2168, 2317 |
| StyI | CCWWGG | 2 cut(s) | 1483, 2281 |
| TaaI | ACNGT | 8 cut(s) | 794, 1312, 1544, 1634, 2251, 2354, 2554, 3540 |
| TaiI | ACGT | 2 cut(s) | 444, 3328 |
| TaqI | TCGA | 7 cut(s) | 56, 407, 444, 1030, 2728, 3347, 3396 |
| TatI | WGTACW | 2 cut(s) | 254, 2650 |
| TauI | GCSGC | 4 cut(s) | 31, 194, 197, 2787 |
| Tru1I | TTAA | 7 cut(s) | 216, 632, 1065, 1203, 1952, 2796, 3595 |
| Tru9I | TTAA | 7 cut(s) | 216, 632, 1065, 1203, 1952, 2796, 3595 |
| TscAI | CASTG | 7 cut(s) | 1042, 1225, 1305, 2107, 2845, 3381, 3391 |
| TseFI | GTSAC | 5 cut(s) | 1049, 1085, 2381, 2489, 3321 |
| Tsp45I | GTSAC | 5 cut(s) | 1049, 1085, 2381, 2489, 3321 |
| TspGWI | ACGGA | 3 cut(s) | 288, 373, 3580 |
| TspRI | CASTG | 7 cut(s) | 1042, 1225, 1305, 2107, 2845, 3381, 3391 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2479 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1381 |
| VpaK11BI | GGWCC | 2 cut(s) | 33, 485 |
| VspI | ATTAAT | 1 cut(s) | 1065 |
| XapI | RAATTY | 5 cut(s) | 634, 1286, 2369, 2659, 3277 |
| XceI | RCATGY | 5 cut(s) | 405, 598, 1698, 2180, 2389 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 43, 2279 |
| XmiI | GTMKAC | 4 cut(s) | 56, 818, 2087, 2108 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3277 |
| XspI | CTAG | 3 cut(s) | 651, 954, 3551 |
| ZraI | GACGTC | 1 cut(s) | 442 |
| Zsp2I | ATGCAT | 4 cut(s) | 596, 1696, 1794, 2193 |