superfamily. Protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77620 |
| fragaria_vesca | FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 FvH4_2g26770 |
| malus_domestica | MD15G1351000.v1.1 |
| prunus_persica | Prupe.1G499900_v2.0.a1 |
| pyrus_communis | pycom15g31350 |
| rosa_chinensis | RchiOBHm_Chr6g0295641 |
| rosa_laevigata | RLG00000011780 |
| rosa_multiflora | Rmu_sc0005000.1_g000001 Rmu_sc0006802.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00172280 |
| rosa_rugosa | Rorug06G0253100 Rorug06G0253100 |
| rosa_samantha | Rh6AG366100 Rh6BG374200 Rh6CG380500 Rh6DG367300 |
| rosa_wichuraiana | Rw6G031950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1101 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1139 |
| Acc36I | ACCTGC | 1 cut(s) | 1671 |
| AccB1I | GGYRCC | 1 cut(s) | 1845 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 983, 1411 |
| AccBSI | CCGCTC | 1 cut(s) | 3157 |
| AccI | GTMKAC | 2 cut(s) | 68, 2165 |
| AclWI | GGATC | 3 cut(s) | 107, 374, 3235 |
| AcoI | YGGCCR | 3 cut(s) | 201, 1332, 2644 |
| AcsI | RAATTY | 6 cut(s) | 649, 1316, 2426, 2588, 2740, 3364 |
| AcuI | CTGAAG | 4 cut(s) | 465, 1820, 2295, 3204 |
| AcyI | GRCGYC | 3 cut(s) | 32, 212, 3543 |
| AfaI | GTAC | 6 cut(s) | 262, 971, 1396, 2209, 2934, 3441 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 983, 1411, 2041 |
| AflIII | ACRYGT | 2 cut(s) | 2233, 3060 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 591 |
| AhlI | ACTAGT | 1 cut(s) | 578 |
| AjiI | CACGTC | 1 cut(s) | 3259 |
| AjnI | CCWGG | 2 cut(s) | 925, 2374 |
| AleI | CACNNNNGTG | 1 cut(s) | 2436 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 143, 175 |
| Alw21I | GWGCWC | 2 cut(s) | 1109, 1248 |
| Alw26I | GTCTC | 4 cut(s) | 49, 1377, 1883, 2819 |
| Alw44I | GTGCAC | 1 cut(s) | 1105 |
| AlwI | GGATC | 3 cut(s) | 107, 374, 3235 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1936, 2174 |
| AoxI | GGCC | 9 cut(s) | 201, 336, 1175, 1332, 1402, 2109, 2644, 3003, 3303 |
| ApaLI | GTGCAC | 1 cut(s) | 1105 |
| ApoI | RAATTY | 6 cut(s) | 649, 1316, 2426, 2588, 2740, 3364 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3364 |
| AspS9I | GGNCC | 5 cut(s) | 45, 305, 593, 1175, 1625 |
| AsuC2I | CCSGG | 2 cut(s) | 49, 2227 |
| AsuHPI | GGTGA | 2 cut(s) | 40, 1091 |
| AsuII | TTCGAA | 2 cut(s) | 413, 1816 |
| AvaII | GGWCC | 4 cut(s) | 45, 305, 593, 1625 |
| AxyI | CCTNAGG | 1 cut(s) | 3307 |
| BaeGI | GKGCMC | 2 cut(s) | 502, 1109 |
| BalI | TGGCCA | 2 cut(s) | 1334, 2646 |
| BanI | GGYRCC | 1 cut(s) | 1845 |
| BanII | GRGCYC | 3 cut(s) | 635, 1248, 2888 |
| BbsI | GAAGAC | 8 cut(s) | 215, 1137, 2256, 2532, 2607, 2631, 2706, 3665 |
| Bbv12I | GWGCWC | 2 cut(s) | 1109, 1248 |
| BccI | CCATC | 8 cut(s) | 296, 1070, 1714, 2011, 2845, 2955, 3115, 3295 |
| BceAI | ACGGC | 1 cut(s) | 56 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 58, 92, 2946, 2980 |
| BciT130I | CCWGG | 2 cut(s) | 927, 2376 |
| BclI | TGATCA | 1 cut(s) | 937 |
| BcnI | CCSGG | 2 cut(s) | 49, 2227 |
| BcoDI | GTCTC | 4 cut(s) | 49, 1377, 1883, 2819 |
| BcuI | ACTAGT | 1 cut(s) | 578 |
| BfaI | CTAG | 4 cut(s) | 579, 666, 2777, 3635 |
| BfmI | CTRYAG | 4 cut(s) | 1197, 1749, 2304, 2418 |
| BfuAI | ACCTGC | 1 cut(s) | 1671 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 40 |
| BglII | AGATCT | 2 cut(s) | 1057, 2617 |
| BlpI | GCTNAGC | 1 cut(s) | 2129 |
| Bme1390I | CCNGG | 4 cut(s) | 49, 927, 2227, 2376 |
| Bme18I | GGWCC | 4 cut(s) | 45, 305, 593, 1625 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 591 |
| BmgBI | CACGTC | 1 cut(s) | 3259 |
| BmgT120I | GGNCC | 5 cut(s) | 45, 305, 593, 1175, 1625 |
| BmiI | GGNNCC | 6 cut(s) | 47, 96, 1627, 1847, 2887, 3105 |
| BmrFI | CCNGG | 4 cut(s) | 49, 927, 2227, 2376 |
| BpiI | GAAGAC | 8 cut(s) | 215, 1137, 2256, 2532, 2607, 2631, 2706, 3665 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 344, 376, 3562, 3594 |
| BpmI | CTGGAG | 3 cut(s) | 923, 1290, 2397 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3590 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2129 |
| Bpu14I | TTCGAA | 2 cut(s) | 413, 1816 |
| BpuEI | CTTGAG | 2 cut(s) | 1802, 3503 |
| BpuMI | CCSGG | 2 cut(s) | 49, 2227 |
| BsaHI | GRCGYC | 3 cut(s) | 32, 212, 3543 |
| BsaJI | CCNNGG | 5 cut(s) | 1849, 1952, 2225, 2338, 3207 |
| BsaWI | WCCGGW | 1 cut(s) | 25 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1263, 1293 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 983, 1411, 2041 |
| Bse118I | RCCGGY | 3 cut(s) | 88, 97, 217 |
| Bse1I | ACTGG | 7 cut(s) | 63, 862, 1068, 1273, 1489, 2594, 3430 |
| Bse21I | CCTNAGG | 1 cut(s) | 3307 |
| Bse3DI | GCAATG | 5 cut(s) | 1901, 2072, 2130, 2974, 3629 |
| BseBI | CCWGG | 2 cut(s) | 927, 2376 |
| BseDI | CCNNGG | 5 cut(s) | 1849, 1952, 2225, 2338, 3207 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 983, 1411, 2041 |
| BseMI | GCAATG | 5 cut(s) | 1901, 2072, 2130, 2974, 3629 |
| BseNI | ACTGG | 7 cut(s) | 63, 862, 1068, 1273, 1489, 2594, 3430 |
| BseRI | GAGGAG | 4 cut(s) | 170, 1821, 3262, 3583 |
| BseSI | GKGCMC | 2 cut(s) | 502, 1109 |
| BseYI | CCCAGC | 2 cut(s) | 2914, 3183 |
| BsgI | GTGCAG | 3 cut(s) | 83, 2176, 2881 |
| Bsh1285I | CGRYCG | 1 cut(s) | 251 |
| BshFI | GGCC | 9 cut(s) | 203, 338, 1177, 1334, 1404, 2111, 2646, 3005, 3305 |
| BshNI | GGYRCC | 1 cut(s) | 1845 |
| BsiEI | CGRYCG | 1 cut(s) | 251 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1109, 1248 |
| BsiSI | CCGG | 6 cut(s) | 26, 49, 89, 98, 218, 2227 |
| BslFI | GGGAC | 1 cut(s) | 752 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 983, 1411, 2041 |
| BsmAI | GTCTC | 4 cut(s) | 49, 1377, 1883, 2819 |
| BsmFI | GGGAC | 1 cut(s) | 752 |
| BsmI | GAATGC | 1 cut(s) | 611 |
| BsnI | GGCC | 9 cut(s) | 203, 338, 1177, 1334, 1404, 2111, 2646, 3005, 3305 |
| Bsp119I | TTCGAA | 2 cut(s) | 413, 1816 |
| Bsp1286I | GDGCHC | 5 cut(s) | 502, 635, 1109, 1248, 2888 |
| Bsp1407I | TGTACA | 1 cut(s) | 2932 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2129 |
| BspANI | GGCC | 9 cut(s) | 203, 338, 1177, 1334, 1404, 2111, 2646, 3005, 3305 |
| BspHI | TCATGA | 3 cut(s) | 601, 1474, 2149 |
| BspLI | GGNNCC | 6 cut(s) | 47, 96, 1627, 1847, 2887, 3105 |
| BspMAI | CTGCAG | 3 cut(s) | 1201, 1753, 2422 |
| BspMI | ACCTGC | 1 cut(s) | 1671 |
| BspPI | GGATC | 3 cut(s) | 107, 374, 3235 |
| BspT104I | TTCGAA | 2 cut(s) | 413, 1816 |
| BspT107I | GGYRCC | 1 cut(s) | 1845 |
| BsrBI | CCGCTC | 1 cut(s) | 3157 |
| BsrDI | GCAATG | 5 cut(s) | 1901, 2072, 2130, 2974, 3629 |
| BsrFI | RCCGGY | 3 cut(s) | 88, 97, 217 |
| BsrGI | TGTACA | 1 cut(s) | 2932 |
| BsrI | ACTGG | 7 cut(s) | 63, 862, 1068, 1273, 1489, 2594, 3430 |
| BssAI | RCCGGY | 3 cut(s) | 88, 97, 217 |
| BssECI | CCNNGG | 5 cut(s) | 1849, 1952, 2225, 2338, 3207 |
| BssNAI | GTATAC | 1 cut(s) | 2166 |
| BssNI | GRCGYC | 3 cut(s) | 32, 212, 3543 |
| BssT1I | CCWWGG | 4 cut(s) | 1849, 1952, 2338, 3207 |
| Bst1107I | GTATAC | 1 cut(s) | 2166 |
| Bst2UI | CCWGG | 2 cut(s) | 927, 2376 |
| Bst6I | CTCTTC | 3 cut(s) | 129, 179, 3676 |
| BstACI | GRCGYC | 3 cut(s) | 32, 212, 3543 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2177 |
| BstAUI | TGTACA | 1 cut(s) | 2932 |
| BstBI | TTCGAA | 2 cut(s) | 413, 1816 |
| BstC8I | GCNNGC | 5 cut(s) | 90, 195, 611, 1762, 3024 |
| BstMAI | GTCTC | 4 cut(s) | 49, 1377, 1883, 2819 |
| BstMCI | CGRYCG | 1 cut(s) | 251 |
| BstNI | CCWGG | 2 cut(s) | 927, 2376 |
| BstNSI | RCATGY | 4 cut(s) | 411, 613, 2237, 3064 |
| BstSCI | CCNGG | 4 cut(s) | 47, 925, 2225, 2374 |
| BstSFI | CTRYAG | 4 cut(s) | 1197, 1749, 2304, 2418 |
| BstSLI | GKGCMC | 2 cut(s) | 502, 1109 |
| BstV2I | GAAGAC | 8 cut(s) | 215, 1137, 2256, 2532, 2607, 2631, 2706, 3665 |
| BstX2I | RGATCY | 3 cut(s) | 366, 1057, 2617 |
| BstYI | RGATCY | 3 cut(s) | 366, 1057, 2617 |
| BstZ17I | GTATAC | 1 cut(s) | 2166 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3307 |
| BsuRI | GGCC | 9 cut(s) | 203, 338, 1177, 1334, 1404, 2111, 2646, 3005, 3305 |
| BtgZI | GCGATG | 1 cut(s) | 2598 |
| BtrI | CACGTC | 1 cut(s) | 3259 |
| BtsI | GCAGTG | 3 cut(s) | 2164, 3478, 3601 |
| BveI | ACCTGC | 1 cut(s) | 1671 |
| Cac8I | GCNNGC | 5 cut(s) | 90, 195, 611, 1762, 3024 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1936, 2174 |
| CciI | TCATGA | 3 cut(s) | 601, 1474, 2149 |
| Cfr10I | RCCGGY | 3 cut(s) | 88, 97, 217 |
| Cfr13I | GGNCC | 5 cut(s) | 45, 305, 593, 1175, 1625 |
| CseI | GACGC | 4 cut(s) | 40, 79, 220, 3532 |
| Csp6I | GTAC | 6 cut(s) | 261, 970, 1395, 2208, 2933, 3440 |
| CviQI | GTAC | 6 cut(s) | 261, 970, 1395, 2208, 2933, 3440 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1139 |
| DriI | GACNNNNNGTC | 1 cut(s) | 591 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1139 |
| EaeI | YGGCCR | 3 cut(s) | 201, 1332, 2644 |
| Eam1104I | CTCTTC | 3 cut(s) | 129, 179, 3676 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 591 |
| EarI | CTCTTC | 3 cut(s) | 129, 179, 3676 |
| EciI | GGCGGA | 3 cut(s) | 58, 67, 107 |
| Ecl136II | GAGCTC | 1 cut(s) | 1246 |
| Eco130I | CCWWGG | 4 cut(s) | 1849, 1952, 2338, 3207 |
| Eco147I | AGGCCT | 1 cut(s) | 3005 |
| Eco24I | GRGCYC | 3 cut(s) | 635, 1248, 2888 |
| Eco32I | GATATC | 1 cut(s) | 2300 |
| Eco47I | GGWCC | 4 cut(s) | 45, 305, 593, 1625 |
| Eco53kI | GAGCTC | 1 cut(s) | 1246 |
| Eco57I | CTGAAG | 4 cut(s) | 465, 1820, 2295, 3204 |
| Eco81I | CCTNAGG | 1 cut(s) | 3307 |
| EcoICRI | GAGCTC | 1 cut(s) | 1246 |
| EcoRII | CCWGG | 2 cut(s) | 925, 2374 |
| EcoRV | GATATC | 1 cut(s) | 2300 |
| EcoT14I | CCWWGG | 4 cut(s) | 1849, 1952, 2338, 3207 |
| EcoT22I | ATGCAT | 4 cut(s) | 611, 1735, 1833, 2250 |
| EcoT38I | GRGCYC | 3 cut(s) | 635, 1248, 2888 |
| ErhI | CCWWGG | 4 cut(s) | 1849, 1952, 2338, 3207 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1361, 1393, 1518, 1550 |
| FaqI | GGGAC | 1 cut(s) | 752 |
| FauI | CCCGC | 2 cut(s) | 158, 412 |
| FauNDI | CATATG | 2 cut(s) | 1894, 3352 |
| FbaI | TGATCA | 1 cut(s) | 937 |
| FblI | GTMKAC | 2 cut(s) | 68, 2165 |
| FriOI | GRGCYC | 3 cut(s) | 635, 1248, 2888 |
| FspBI | CTAG | 4 cut(s) | 579, 666, 2777, 3635 |
| GsaI | CCCAGC | 2 cut(s) | 2918, 3187 |
| GsuI | CTGGAG | 3 cut(s) | 923, 1290, 2397 |
| HaeIII | GGCC | 9 cut(s) | 203, 338, 1177, 1334, 1404, 2111, 2646, 3005, 3305 |
| HapII | CCGG | 6 cut(s) | 26, 49, 89, 98, 218, 2227 |
| HgaI | GACGC | 4 cut(s) | 40, 79, 220, 3532 |
| Hin1I | GRCGYC | 3 cut(s) | 32, 212, 3543 |
| HincII | GTYRAC | 1 cut(s) | 69 |
| HindII | GTYRAC | 1 cut(s) | 69 |
| HindIII | AAGCTT | 3 cut(s) | 463, 1358, 3522 |
| HpaII | CCGG | 6 cut(s) | 26, 49, 89, 98, 218, 2227 |
| HphI | GGTGA | 2 cut(s) | 40, 1091 |
| Hpy166II | GTNNAC | 8 cut(s) | 69, 263, 1107, 1349, 1558, 2166, 2816, 3256 |
| Hpy8I | GTNNAC | 8 cut(s) | 69, 263, 1107, 1349, 1558, 2166, 2816, 3256 |
| Hpy99I | CGWCG | 3 cut(s) | 73, 271, 3548 |
| HpyCH4IV | ACGT | 2 cut(s) | 1579, 3258 |
| HpySE526I | ACGT | 2 cut(s) | 1579, 3258 |
| Hsp92I | GRCGYC | 3 cut(s) | 32, 212, 3543 |
| KroI | GCCGGC | 1 cut(s) | 88 |
| KroNI | GCCGGC | 1 cut(s) | 90 |
| Ksp22I | TGATCA | 1 cut(s) | 937 |
| LmnI | GCTCC | 9 cut(s) | 94, 232, 1243, 1271, 1717, 2188, 2342, 2891, 3583 |
| MaeI | CTAG | 4 cut(s) | 579, 666, 2777, 3635 |
| MaeII | ACGT | 2 cut(s) | 1579, 3258 |
| MaeIII | GTNAC | 9 cut(s) | 28, 1079, 1115, 1168, 1495, 2308, 2380, 2546, 3408 |
| MbiI | CCGCTC | 1 cut(s) | 3157 |
| MfeI | CAATTG | 5 cut(s) | 1179, 2846, 3164, 3177, 3435 |
| MflI | RGATCY | 3 cut(s) | 366, 1057, 2617 |
| MhlI | GDGCHC | 5 cut(s) | 502, 635, 1109, 1248, 2888 |
| MlsI | TGGCCA | 2 cut(s) | 1334, 2646 |
| MluNI | TGGCCA | 2 cut(s) | 1334, 2646 |
| MlyI | GAGTC | 5 cut(s) | 178, 881, 1112, 2342, 3137 |
| MmeI | TCCRAC | 4 cut(s) | 1244, 2778, 3111, 3301 |
| Mox20I | TGGCCA | 2 cut(s) | 1334, 2646 |
| Mph1103I | ATGCAT | 4 cut(s) | 611, 1735, 1833, 2250 |
| MroNI | GCCGGC | 1 cut(s) | 88 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3364 |
| MscI | TGGCCA | 2 cut(s) | 1334, 2646 |
| MseI | TTAA | 8 cut(s) | 222, 647, 1233, 2030, 2414, 2720, 2877, 3679 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1258, 2436 |
| Msp20I | TGGCCA | 2 cut(s) | 1334, 2646 |
| MspA1I | CMGCKG | 1 cut(s) | 3144 |
| MspI | CCGG | 6 cut(s) | 26, 49, 89, 98, 218, 2227 |
| MspR9I | CCNGG | 4 cut(s) | 49, 927, 2227, 2376 |
| MunI | CAATTG | 5 cut(s) | 1179, 2846, 3164, 3177, 3435 |
| Mva1269I | GAATGC | 1 cut(s) | 611 |
| MvaI | CCWGG | 2 cut(s) | 927, 2376 |
| NaeI | GCCGGC | 1 cut(s) | 90 |
| NciI | CCSGG | 2 cut(s) | 49, 2227 |
| NdeI | CATATG | 2 cut(s) | 1894, 3352 |
| NgoMIV | GCCGGC | 1 cut(s) | 88 |
| NlaIV | GGNNCC | 6 cut(s) | 47, 96, 1627, 1847, 2887, 3105 |
| NmuCI | GTSAC | 6 cut(s) | 28, 1079, 1115, 2380, 2546, 3408 |
| NsiI | ATGCAT | 4 cut(s) | 611, 1735, 1833, 2250 |
| NspI | RCATGY | 4 cut(s) | 411, 613, 2237, 3064 |
| NspV | TTCGAA | 2 cut(s) | 413, 1816 |
| OliI | CACNNNNGTG | 1 cut(s) | 2436 |
| PaeI | GCATGC | 1 cut(s) | 613 |
| PagI | TCATGA | 3 cut(s) | 601, 1474, 2149 |
| PceI | AGGCCT | 1 cut(s) | 3005 |
| PciI | ACATGT | 2 cut(s) | 2233, 3060 |
| PctI | GAATGC | 1 cut(s) | 611 |
| PdiI | GCCGGC | 1 cut(s) | 90 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3364 |
| PfeI | GAWTC | 9 cut(s) | 8, 1010, 2270, 2477, 2804, 2939, 3095, 3134, 3450 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 983, 1411 |
| PfoI | TCCNGGA | 1 cut(s) | 2374 |
| Ple19I | CGATCG | 1 cut(s) | 251 |
| PleI | GAGTC | 5 cut(s) | 177, 880, 1112, 2342, 3136 |
| PpsI | GAGTC | 5 cut(s) | 177, 880, 1112, 2342, 3136 |
| PscI | ACATGT | 2 cut(s) | 2233, 3060 |
| PsiI | TTATAA | 1 cut(s) | 1101 |
| Psp124BI | GAGCTC | 1 cut(s) | 1248 |
| Psp6I | CCWGG | 2 cut(s) | 925, 2374 |
| PspFI | CCCAGC | 2 cut(s) | 2914, 3183 |
| PspGI | CCWGG | 2 cut(s) | 925, 2374 |
| PspN4I | GGNNCC | 6 cut(s) | 47, 96, 1627, 1847, 2887, 3105 |
| PspPI | GGNCC | 5 cut(s) | 45, 305, 593, 1175, 1625 |
| PstI | CTGCAG | 3 cut(s) | 1201, 1753, 2422 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1936, 2174 |
| PsuI | RGATCY | 3 cut(s) | 366, 1057, 2617 |
| PvuI | CGATCG | 1 cut(s) | 251 |
| PvuII | CAGCTG | 1 cut(s) | 3144 |
| RsaI | GTAC | 6 cut(s) | 262, 971, 1396, 2209, 2934, 3441 |
| RsaNI | GTAC | 6 cut(s) | 261, 970, 1395, 2208, 2933, 3440 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1258, 2436 |
| SacI | GAGCTC | 1 cut(s) | 1248 |
| SalI | GTCGAC | 1 cut(s) | 67 |
| SaqAI | TTAA | 8 cut(s) | 222, 647, 1233, 2030, 2414, 2720, 2877, 3679 |
| Sau96I | GGNCC | 5 cut(s) | 45, 305, 593, 1175, 1625 |
| SchI | GAGTC | 5 cut(s) | 178, 881, 1112, 2342, 3137 |
| ScrFI | CCNGG | 4 cut(s) | 49, 927, 2227, 2376 |
| SduI | GDGCHC | 5 cut(s) | 502, 635, 1109, 1248, 2888 |
| SfcI | CTRYAG | 4 cut(s) | 1197, 1749, 2304, 2418 |
| SfuI | TTCGAA | 2 cut(s) | 413, 1816 |
| SinI | GGWCC | 4 cut(s) | 45, 305, 593, 1625 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1258, 2436 |
| SmlI | CTYRAG | 2 cut(s) | 1781, 3482 |
| SmoI | CTYRAG | 2 cut(s) | 1781, 3482 |
| SpeI | ACTAGT | 1 cut(s) | 578 |
| SphI | GCATGC | 1 cut(s) | 613 |
| SseBI | AGGCCT | 1 cut(s) | 3005 |
| SspI | AATATT | 3 cut(s) | 624, 1635, 2783 |
| SspMI | CTAG | 4 cut(s) | 579, 666, 2777, 3635 |
| SstI | GAGCTC | 1 cut(s) | 1248 |
| StuI | AGGCCT | 1 cut(s) | 3005 |
| StyD4I | CCNGG | 4 cut(s) | 47, 925, 2225, 2374 |
| StyI | CCWWGG | 4 cut(s) | 1849, 1952, 2338, 3207 |
| TaiI | ACGT | 2 cut(s) | 1582, 3261 |
| TaqI | TCGA | 7 cut(s) | 68, 413, 450, 1816, 2679, 2956, 3546 |
| TatI | WGTACW | 2 cut(s) | 260, 2932 |
| TauI | GCSGC | 5 cut(s) | 16, 200, 203, 217, 2868 |
| TfiI | GAWTC | 9 cut(s) | 8, 1010, 2270, 2477, 2804, 2939, 3095, 3134, 3450 |
| Tru1I | TTAA | 8 cut(s) | 222, 647, 1233, 2030, 2414, 2720, 2877, 3679 |
| Tru9I | TTAA | 8 cut(s) | 222, 647, 1233, 2030, 2414, 2720, 2877, 3679 |
| TseFI | GTSAC | 6 cut(s) | 28, 1079, 1115, 2380, 2546, 3408 |
| Tsp45I | GTSAC | 6 cut(s) | 28, 1079, 1115, 2380, 2546, 3408 |
| TspGWI | ACGGA | 1 cut(s) | 379 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 983, 1411 |
| VneI | GTGCAC | 1 cut(s) | 1105 |
| VpaK11BI | GGWCC | 4 cut(s) | 45, 305, 593, 1625 |
| XapI | RAATTY | 6 cut(s) | 649, 1316, 2426, 2588, 2740, 3364 |
| XbaI | TCTAGA | 1 cut(s) | 2776 |
| XceI | RCATGY | 4 cut(s) | 411, 613, 2237, 3064 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 980, 2336 |
| XmiI | GTMKAC | 2 cut(s) | 68, 2165 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3364 |
| XspI | CTAG | 4 cut(s) | 579, 666, 2777, 3635 |
| Zsp2I | ATGCAT | 4 cut(s) | 611, 1735, 1833, 2250 |