Rh6DG367300
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006838
Physical Location & Seq
Forward (+)
56353118 .. 56361255
8138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG367300.1

Sequence Viewer

Length: 3681 bp
ATGGACGAATCGCCGCAGAAATCTCCGGCGACGCCGAAACGGCGGACCCGGCGGAGACTGGTGCAGTCGACGCTGGTGCTTGTGAAGCCGGCGGAGCCGGTGGAGAACGGCGATCCGAAGAAGGAGAATAGCGAAGAGAAGAACGATCAGGATGAGGAGTTCTGCGGGAGTCAGAGCAAGAGGAAGAGGAAGCCGGCGGCGGCCAAGAAGACGCCGCCGGTTAAAGCTCCTAAGAAGAACGGTAAGCGATCGGCGAATAGTACACCGACCAGGAAGAGTGGAAAAGATGTGGTGGTTGAAGATGGACCTCTGATAATGCCTGATTTGAGATTAGAGGCCAAATTGAGAAGCGAGGAAATCTCACGGATCTGGACGAAGGAAGGAAGGCAATTACATCCCTTTTTTGCATGTTCGAAAGCGGGCAAGAAAAGTCAGGAGGCAACTGAAGTCGAGGGCAGTTCAAGCTTCATGGGGAGTAAGGAGAAATATATTACTTGTGCCCCAATTCATGTGTTTGAAGATACTCAGGACGATGCTGTGTTTCTTGATTGGAGAAATTGGACATTTTGTGAGGAAACCAGTCTGACAAGTGGTCCTCATCATGAATGCATGCCGTCCTCAATATTTGAGGGCTCTGTTGAGTGCTTAAATTTTGATAAGGCTTCTAGTGTTTCCCAACCGTGCAAATCATCAACTTTTCAAAACACAGCCTCTTTAGATCAGTGTCGTATTCAACAGGAATGTGCTCAGGAAACATCATCCACAGTCCCTCAGTTTTTGCCTAATGAGCAAATGAGGTGCTATCAGCACTCAAAGGAAGTAGAGGATTGTGAGGTTGGTTTGTTTTCTGAGCATACTGGTTGCATGAAGGAGTCAGATATTGAGCAGCAGAATACATTTCTGGAGGAAAGGATGTCAAACAATCCTGGTTGCTGTGATCAATCTGAGAATAGCTTATGGACTTATAAGTACCAGCCAAAGAATGCCAGGGAGGTATGTGGTAATAATGAATCTGTGAGGTTTTTGAGTGAGTGGCTTCGTTCTTGGTATGAACGAGATCTTCAAACTAGTGAAGATGGTGACAGGCAAGGCATTGATTATAAGTGCACTCAAAGTGACTCAGAAAGTGAAGACGATGAGATCTTGAAGAAAAAGAATGTTCTGTTAGTTACAGGGCCAATTGGGAGTGGAAAGTCTGCAGCTATATATGCGTGTGCAAAAGAACAAGGGATTAAGGTTTTGGAGCTCAGTGCATCAGAGTGTCGGACTGGAGCTACTGTAAAACAGAGGTTTGGAGAGGCGTTCAAATCTCGCAAATTTCAAAGATCAGTGACCAATGCTGCTGGTTCACAGAACAAGCTTATTATGAAGTCTCGCTTTGTTGAGGCTACTGGTACGACAGGCCAAGACTTGGATGATGATGTTGTTGAACTGATACCCATATCAGATGAAGAAAGTCATGATGCTACTGGAACTTCTGGAACATTTGCCTTCAAGGAGGACTGTTGCAAAGATAAACTTGTTATACTTTTTGAGGATGTGGACATTACTTTTCAAGAAGAACGTGGTTTCATTGCAGCAATTCAGCAGATAGCTAAAACAGCGAATGGGCCCATAATATTGACCAGCAATAGTAAGAGGTTTACAGGTCCAAAACCTGACCTGCCAGACAGTTTTGATAGATTACAAGTGCATTTCATGTTGCCATCATCAGCGGAGCTGTATTCCCACGCATATATGGTTTGTGCTGCAGAGAGAGCCAGCATACAGCCCTATTTACTTGAGCGATTTATTGACTGTTGTGGAGGAGATATTCGGAAAATTATTATGCATCTTCAGTTCTGGTGCCAAGGTAGAAGTTTTAGAAAAGATACAAAAATTATGCGAGAGACATATGGTTCATTGCTATTTGATGTTGAGGCTGGTCATCAGATGCTGCCAAAATTATTACCTTGGGATTTACCTTCTCAGTTATCTGATTTAGTAGAGAAAGAGATAACCAAGTCATTATCAATGATGGAAGAAGGTTTAAGCCCAATGGAGGTAGATGACAATATAGAAGTGCAATGTAGTTTGAACATGGCTTATAGTGAAATGGAAAATATGGAGGCCAAGAAGGTAGCAATGCTGAGCAGGAATGGCTATACTCATGAGTGCAGTGAGTACACAGCAACTGATACTGCTCCCGACTTTTCTAATGATTCAAGTACCTCATTTCCTTTCCCCCGGCGACATGTTCGGAGGATGCATGGTGTTGTATTGTCTTCTGATTCTGAAGATGACTTTATGAAGAATGGATATCCTACAGTTACAGATAAAGATACTAACCATGAAATCCTTGGAGTTGACTCATTATCAGAGATGGTACTTTTTCCTGGAGTGACGAATATAGATAGAGGACTTTATGACTGTTTAACTGCAGATGAATTTCCCACAAGTGAAATGTGCAACTTCGCAGATATATCCTGTGTGCCAGAATCGTCTTTTGTTCCCGAAACTCAAATGGATAATGAAACAGATTTCTTATCTCAAACAATGTCTTCTGGTCACTTTGCTACAGCTATAAATGAAGTATTTTTGGGCGATGAATTACCAGTTGAAGACAATAATGGAATAGATCTGTTGTCTCAAACAGTGTCTTCTGGCCATTTTGCTAACACCATGAATGAAGTACGTTTCGATGAAGAATTACCTGTTGAAGACAACAATCCTGCTCAATTAAAATCAGGATTACAGATAAATTTTGATAATGTGGGAAATAATTGTGATGCCATTCTAGAATATTCTCATCAGGAGTTGGAAGATTCTCAAAGTGAACATGGGGAGACTGTTGCAAGAGCTTATCAATTGATGGATGAGTGCAGCCGCATGGATTTTAATAAGGGCTCCAAGTTTATACAGGAGAAAAAAACCTCAGCAGTCAGTGATCTTGTTCAAGATTCATGGAACAAAATTCGTGGATGGCGCAATGATCTAAGGCAGTATGCTGCATCAGAACAAGAGGCCTCTCAGATTGTTATGCTTGCTTATAGAATGAGCAATTTGATCTCGGAAACTGACATGTTGTTTTCTAAATGCCAACCACTAATGAGTGATTCTGTGGAACCATCAATGATCTCCTCTGATGAGTCGGATTCATTCAGCTGGTGTGATGAGCGGTTGCTATTGGCATCCACAATTGCCCAGCATGGATTTTGCTTCTACGCAAAGGGCATTTCTTCAGTAGGATCAAATGTAGGTTGTGTGAGGAGGGTGGATGTGGATATAGCCTCTGAGATGTTGGCTAACACAACTAATATGATGGCCTTATGTAAGTTAGTTGGACGGGGTATGAGAACAAGTAAAACATCATATGCTGGAAGAAATTCAGAGATTAGTCAGCCAAATGTGATTACAAGTGAAATCAAGTCGCATATATTTGATGCAATCCAGTCAATTGTACCTTCCAGATTCAACTTGACATTGAGAGGCAGTGCATACCTCGAGTATCTTTCCTCACTTCGCCACATTTCAAGATCAGAAGCTTCTCGTTTGTCAAAAGGCGTCGAGATGACCACAAGAAGAAGGAGGAGGGTTGCTCCACACTACCTGAGCAGTGGTGCAAGAATGTTGTCTGCTGAACAGTTATCATTGCTAGATCAGTATAACTTACGTGGGAAGACCACCACCTCTTCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0001775 GO:0002200 GO:0002204 GO:0002208 GO:0002250 GO:0002252 GO:0002263 GO:0002285 GO:0002312 GO:0002366 GO:0002376 GO:0002377 GO:0002381 GO:0002440 GO:0002443 GO:0002449 GO:0002460 GO:0002520 GO:0002562 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006310 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006955 GO:0006974 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0008284 GO:0008630 GO:0009058 GO:0009059 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010564 GO:0010604 GO:0010646 GO:0010648 GO:0010941 GO:0012501 GO:0016064 GO:0016444 GO:0016445 GO:0016447 GO:0019219 GO:0019222 GO:0019724 GO:0022402 GO:0023051 GO:0023052 GO:0023057 GO:0030888 GO:0030890 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032943 GO:0032944 GO:0032946 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0035556 GO:0042100 GO:0042113 GO:0042127 GO:0042770 GO:0042771 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045190 GO:0045191 GO:0045321 GO:0045830 GO:0045911 GO:0045935 GO:0046483 GO:0046649 GO:0046651 GO:0048302 GO:0048304 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0050670 GO:0050671 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051249 GO:0051251 GO:0051716 GO:0051726 GO:0060255 GO:0060548 GO:0065007 GO:0070661 GO:0070663 GO:0070665 GO:0071704 GO:0072331 GO:0072332 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097190 GO:0097193 GO:1901360 GO:1901576 GO:1901796 GO:1901797 GO:1901987 GO:1901990 GO:1902165 GO:1902166 GO:1902229 GO:1902230 GO:1902253 GO:1902254 GO:1902531 GO:1902532 GO:2000026 GO:2001020 GO:2001021 GO:2001233 GO:2001234 GO:2001242 GO:2001243
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Rad17

Protein Analysis

1226

Amino Acids

137.52

Weight (kDa)

5.04

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 966, 1101
Acc36I ACCTGC 1 cut(s) 1671
AccB1I GGYRCC 1 cut(s) 1845
AccB7I CCANNNNNTGG 1 cut(s) 1411
AccBSI CCGCTC 1 cut(s) 3157
AccI GTMKAC 1 cut(s) 68
AclWI GGATC 3 cut(s) 107, 374, 3235
AcoI YGGCCR 2 cut(s) 201, 2644
AcsI RAATTY 6 cut(s) 649, 1316, 2426, 2740, 2952, 3364
AcuI CTGAAG 4 cut(s) 465, 1820, 2295, 3204
AcyI GRCGYC 3 cut(s) 32, 212, 3543
AfaI GTAC 8 cut(s) 262, 971, 1396, 2165, 2209, 2367, 2673, 3441
AfiI CCNNNNNNNGG 2 cut(s) 1411, 2041
AflIII ACRYGT 2 cut(s) 2233, 3060
AhdI GACNNNNNGTC 1 cut(s) 591
AhlI ACTAGT 1 cut(s) 1067
AjnI CCWGG 4 cut(s) 269, 925, 986, 2374
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
Alw21I GWGCWC 3 cut(s) 748, 1109, 1248
Alw26I GTCTC 5 cut(s) 49, 1377, 1883, 2631, 2819
Alw44I GTGCAC 1 cut(s) 1105
AlwI GGATC 3 cut(s) 107, 374, 3235
AlwNI CAGNNNCTG 2 cut(s) 1936, 2174
Ama87I CYCGRG 1 cut(s) 3482
AoxI GGCC 9 cut(s) 201, 336, 1175, 1402, 1610, 2109, 2644, 3003, 3303
ApaI GGGCCC 1 cut(s) 1614
ApaLI GTGCAC 1 cut(s) 1105
ApeKI GCWGC 8 cut(s) 886, 1199, 1340, 1577, 1748, 1936, 2862, 2987
ApoI RAATTY 6 cut(s) 649, 1316, 2426, 2740, 2952, 3364
Asp700I GAANNNNTTC 1 cut(s) 3364
AspLEI GCGC 1 cut(s) 2967
AspS9I GGNCC 7 cut(s) 45, 305, 593, 1175, 1610, 1611, 1649
AsuC2I CCSGG 2 cut(s) 49, 2227
AsuHPI GGTGA 1 cut(s) 1091
AsuII TTCGAA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 3482
AvaII GGWCC 4 cut(s) 45, 305, 593, 1649
BaeGI GKGCMC 3 cut(s) 502, 1109, 1614
BalI TGGCCA 1 cut(s) 2646
BanI GGYRCC 1 cut(s) 1845
BanII GRGCYC 4 cut(s) 635, 1248, 1614, 2888
BbsI GAAGAC 8 cut(s) 215, 1137, 2256, 2532, 2607, 2631, 2706, 3665
Bbv12I GWGCWC 3 cut(s) 748, 1109, 1248
BbvCI CCTCAGC 1 cut(s) 2914
BbvI GCAGC 8 cut(s) 898, 1211, 1327, 1589, 1735, 1923, 2874, 2974
BccI CCATC 9 cut(s) 296, 1070, 1714, 2011, 2356, 2845, 2955, 3115, 3295
BceAI ACGGC 3 cut(s) 56, 124, 598
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 4 cut(s) 271, 927, 988, 2376
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 2 cut(s) 49, 2227
BcoDI GTCTC 5 cut(s) 49, 1377, 1883, 2631, 2819
BcuI ACTAGT 1 cut(s) 1067
BfaI CTAG 4 cut(s) 666, 1068, 2777, 3635
BfmI CTRYAG 5 cut(s) 1197, 1749, 2304, 2418, 2556
BfuAI ACCTGC 1 cut(s) 1671
BglI GCCNNNNNGGC 1 cut(s) 40
BglII AGATCT 3 cut(s) 1057, 1140, 2617
BlpI GCTNAGC 1 cut(s) 2129
Bme1390I CCNGG 6 cut(s) 49, 271, 927, 988, 2227, 2376
Bme18I GGWCC 4 cut(s) 45, 305, 593, 1649
BmeRI GACNNNNNGTC 1 cut(s) 591
BmeT110I CYCGRG 1 cut(s) 3482
BmgT120I GGNCC 7 cut(s) 45, 305, 593, 1175, 1610, 1611, 1649
BmiI GGNNCC 6 cut(s) 47, 96, 1612, 1847, 2887, 3105
BmrFI CCNGG 6 cut(s) 49, 271, 927, 988, 2227, 2376
BpiI GAAGAC 8 cut(s) 215, 1137, 2256, 2532, 2607, 2631, 2706, 3665
BplI GAGNNNNNCTC 4 cut(s) 344, 376, 3562, 3594
BpmI CTGGAG 3 cut(s) 923, 1290, 2397
Bpu10I CCTNAGC 3 cut(s) 747, 2914, 3590
Bpu1102I GCTNAGC 1 cut(s) 2129
Bpu14I TTCGAA 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 1802
BpuMI CCSGG 2 cut(s) 49, 2227
BsaAI YACGTR 1 cut(s) 3653
BsaHI GRCGYC 3 cut(s) 32, 212, 3543
BsaJI CCNNGG 5 cut(s) 987, 1849, 1952, 2225, 2338
BsaXI ACNNNNNCTCC 2 cut(s) 1263, 1293
Bsc4I CCNNNNNNNGG 2 cut(s) 1411, 2041
Bse118I RCCGGY 4 cut(s) 88, 97, 193, 217
Bse1I ACTGG 8 cut(s) 63, 579, 862, 1273, 1396, 1474, 2594, 3430
Bse3DI GCAATG 6 cut(s) 1572, 1901, 2072, 2130, 2974, 3629
BseBI CCWGG 4 cut(s) 271, 927, 988, 2376
BseDI CCNNGG 5 cut(s) 987, 1849, 1952, 2225, 2338
BseLI CCNNNNNNNGG 2 cut(s) 1411, 2041
BseMI GCAATG 6 cut(s) 1572, 1901, 2072, 2130, 2974, 3629
BseNI ACTGG 8 cut(s) 63, 579, 862, 1273, 1396, 1474, 2594, 3430
BseRI GAGGAG 5 cut(s) 170, 1821, 3109, 3262, 3583
BseSI GKGCMC 3 cut(s) 502, 1109, 1614
BseXI GCAGC 8 cut(s) 898, 1211, 1327, 1589, 1735, 1923, 2874, 2974
BseYI CCCAGC 1 cut(s) 3183
BsgI GTGCAG 3 cut(s) 83, 2176, 2881
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 9 cut(s) 203, 338, 1177, 1404, 1612, 2111, 2646, 3005, 3305
BshNI GGYRCC 1 cut(s) 1845
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 3 cut(s) 748, 1109, 1248
BsiHKCI CYCGRG 1 cut(s) 3482
BsiSI CCGG 7 cut(s) 26, 49, 89, 98, 194, 218, 2227
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 2 cut(s) 1411, 2041
BsmAI GTCTC 5 cut(s) 49, 1377, 1883, 2631, 2819
BsmFI GGGAC 1 cut(s) 752
BsmI GAATGC 2 cut(s) 611, 988
BsnI GGCC 9 cut(s) 203, 338, 1177, 1404, 1612, 2111, 2646, 3005, 3305
BsoBI CYCGRG 1 cut(s) 3482
Bsp119I TTCGAA 1 cut(s) 413
Bsp120I GGGCCC 1 cut(s) 1610
Bsp1286I GDGCHC 7 cut(s) 502, 635, 748, 1109, 1248, 1614, 2888
Bsp1720I GCTNAGC 1 cut(s) 2129
BspANI GGCC 9 cut(s) 203, 338, 1177, 1404, 1612, 2111, 2646, 3005, 3305
BspHI TCATGA 3 cut(s) 601, 1459, 2149
BspLI GGNNCC 6 cut(s) 47, 96, 1612, 1847, 2887, 3105
BspMAI CTGCAG 3 cut(s) 1201, 1753, 2422
BspMI ACCTGC 1 cut(s) 1671
BspPI GGATC 3 cut(s) 107, 374, 3235
BspT104I TTCGAA 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 1845
BsrBI CCGCTC 1 cut(s) 3157
BsrDI GCAATG 6 cut(s) 1572, 1901, 2072, 2130, 2974, 3629
BsrFI RCCGGY 4 cut(s) 88, 97, 193, 217
BsrI ACTGG 8 cut(s) 63, 579, 862, 1273, 1396, 1474, 2594, 3430
BssAI RCCGGY 4 cut(s) 88, 97, 193, 217
BssECI CCNNGG 5 cut(s) 987, 1849, 1952, 2225, 2338
BssNI GRCGYC 3 cut(s) 32, 212, 3543
BssT1I CCWWGG 3 cut(s) 1849, 1952, 2338
Bst2UI CCWGG 4 cut(s) 271, 927, 988, 2376
Bst6I CTCTTC 4 cut(s) 129, 179, 269, 3676
BstACI GRCGYC 3 cut(s) 32, 212, 3543
BstBAI YACGTR 1 cut(s) 3653
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 6 cut(s) 90, 195, 421, 611, 1762, 3024
BstHHI GCGC 1 cut(s) 2967
BstMAI GTCTC 5 cut(s) 49, 1377, 1883, 2631, 2819
BstMCI CGRYCG 1 cut(s) 251
BstNI CCWGG 4 cut(s) 271, 927, 988, 2376
BstNSI RCATGY 4 cut(s) 411, 613, 2237, 3064
BstSCI CCNGG 6 cut(s) 47, 269, 925, 986, 2225, 2374
BstSFI CTRYAG 5 cut(s) 1197, 1749, 2304, 2418, 2556
BstSLI GKGCMC 3 cut(s) 502, 1109, 1614
BstV1I GCAGC 8 cut(s) 898, 1211, 1327, 1589, 1735, 1923, 2874, 2974
BstV2I GAAGAC 8 cut(s) 215, 1137, 2256, 2532, 2607, 2631, 2706, 3665
BstX2I RGATCY 4 cut(s) 366, 1057, 1140, 2617
BstYI RGATCY 4 cut(s) 366, 1057, 1140, 2617
BsuRI GGCC 9 cut(s) 203, 338, 1177, 1404, 1612, 2111, 2646, 3005, 3305
BtgZI GCGATG 1 cut(s) 2598
BtsI GCAGTG 3 cut(s) 2164, 3478, 3601
BtsIMutI CAGTG 8 cut(s) 728, 1255, 1335, 2164, 2640, 2929, 3478, 3601
BveI ACCTGC 1 cut(s) 1671
Cac8I GCNNGC 6 cut(s) 90, 195, 421, 611, 1762, 3024
CaiI CAGNNNCTG 2 cut(s) 1936, 2174
CciI TCATGA 3 cut(s) 601, 1459, 2149
CfoI GCGC 1 cut(s) 2967
Cfr10I RCCGGY 4 cut(s) 88, 97, 193, 217
Cfr13I GGNCC 7 cut(s) 45, 305, 593, 1175, 1610, 1611, 1649
CseI GACGC 4 cut(s) 40, 79, 220, 3532
Csp6I GTAC 8 cut(s) 261, 970, 1395, 2164, 2208, 2366, 2672, 3440
CspCI CAANNNNNGTGG 2 cut(s) 2938, 2973
CviQI GTAC 8 cut(s) 261, 970, 1395, 2164, 2208, 2366, 2672, 3440
DriI GACNNNNNGTC 1 cut(s) 591
EaeI YGGCCR 2 cut(s) 201, 2644
Eam1104I CTCTTC 4 cut(s) 129, 179, 269, 3676
Eam1105I GACNNNNNGTC 1 cut(s) 591
EarI CTCTTC 4 cut(s) 129, 179, 269, 3676
EciI GGCGGA 3 cut(s) 58, 67, 107
Ecl136II GAGCTC 1 cut(s) 1246
Eco130I CCWWGG 3 cut(s) 1849, 1952, 2338
Eco147I AGGCCT 1 cut(s) 3005
Eco24I GRGCYC 4 cut(s) 635, 1248, 1614, 2888
Eco32I GATATC 1 cut(s) 2300
Eco47I GGWCC 4 cut(s) 45, 305, 593, 1649
Eco53kI GAGCTC 1 cut(s) 1246
Eco57I CTGAAG 4 cut(s) 465, 1820, 2295, 3204
Eco88I CYCGRG 1 cut(s) 3482
EcoICRI GAGCTC 1 cut(s) 1246
EcoRII CCWGG 4 cut(s) 269, 925, 986, 2374
EcoRV GATATC 1 cut(s) 2300
EcoT14I CCWWGG 3 cut(s) 1849, 1952, 2338
EcoT22I ATGCAT 3 cut(s) 611, 1833, 2250
EcoT38I GRGCYC 4 cut(s) 635, 1248, 1614, 2888
ErhI CCWWGG 3 cut(s) 1849, 1952, 2338
FalI AAGNNNNNCTT 4 cut(s) 1361, 1393, 1503, 1535
FaqI GGGAC 1 cut(s) 752
FauI CCCGC 2 cut(s) 158, 412
FauNDI CATATG 2 cut(s) 1894, 3352
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 1 cut(s) 68
FriOI GRGCYC 4 cut(s) 635, 1248, 1614, 2888
FspBI CTAG 4 cut(s) 666, 1068, 2777, 3635
GlaI GCGC 1 cut(s) 2966
GsaI CCCAGC 1 cut(s) 3187
GsuI CTGGAG 3 cut(s) 923, 1290, 2397
HaeIII GGCC 9 cut(s) 203, 338, 1177, 1404, 1612, 2111, 2646, 3005, 3305
HapII CCGG 7 cut(s) 26, 49, 89, 98, 194, 218, 2227
HgaI GACGC 4 cut(s) 40, 79, 220, 3532
HhaI GCGC 1 cut(s) 2967
Hin1I GRCGYC 3 cut(s) 32, 212, 3543
Hin6I GCGC 1 cut(s) 2965
HinP1I GCGC 1 cut(s) 2965
HincII GTYRAC 2 cut(s) 69, 2347
HindII GTYRAC 2 cut(s) 69, 2347
HindIII AAGCTT 3 cut(s) 463, 1358, 3522
HpaII CCGG 7 cut(s) 26, 49, 89, 98, 194, 218, 2227
HphI GGTGA 1 cut(s) 1091
Hpy166II GTNNAC 9 cut(s) 69, 263, 1107, 1349, 1543, 1644, 2166, 2347, 2816
Hpy8I GTNNAC 9 cut(s) 69, 263, 1107, 1349, 1543, 1644, 2166, 2347, 2816
Hpy99I CGWCG 3 cut(s) 34, 73, 3548
HpyCH4IV ACGT 3 cut(s) 1564, 2674, 3652
HpySE526I ACGT 3 cut(s) 1564, 2674, 3652
Hsp92I GRCGYC 3 cut(s) 32, 212, 3543
HspAI GCGC 1 cut(s) 2965
KroI GCCGGC 2 cut(s) 88, 193
KroNI GCCGGC 2 cut(s) 90, 195
Ksp22I TGATCA 1 cut(s) 937
LmnI GCTCC 8 cut(s) 94, 232, 1243, 1271, 1717, 2188, 2891, 3583
Lsp1109I GCAGC 8 cut(s) 898, 1211, 1327, 1589, 1735, 1923, 2874, 2974
MaeI CTAG 4 cut(s) 666, 1068, 2777, 3635
MaeII ACGT 3 cut(s) 1564, 2674, 3652
MaeIII GTNAC 7 cut(s) 1079, 1115, 1168, 1330, 2308, 2380, 2546
MbiI CCGCTC 1 cut(s) 3157
MfeI CAATTG 4 cut(s) 1179, 2846, 3177, 3435
MflI RGATCY 4 cut(s) 366, 1057, 1140, 2617
MhlI GDGCHC 7 cut(s) 502, 635, 748, 1109, 1248, 1614, 2888
MlsI TGGCCA 1 cut(s) 2646
MluNI TGGCCA 1 cut(s) 2646
MlyI GAGTC 5 cut(s) 178, 881, 1112, 2342, 3137
MmeI TCCRAC 4 cut(s) 1244, 2778, 3111, 3301
Mox20I TGGCCA 1 cut(s) 2646
Mph1103I ATGCAT 3 cut(s) 611, 1833, 2250
MroNI GCCGGC 2 cut(s) 88, 193
MroXI GAANNNNTTC 1 cut(s) 3364
MscI TGGCCA 1 cut(s) 2646
MseI TTAA 8 cut(s) 222, 647, 1233, 2030, 2414, 2720, 2877, 3679
MslI CAYNNNNRTG 1 cut(s) 1258
Msp20I TGGCCA 1 cut(s) 2646
MspA1I CMGCKG 2 cut(s) 1715, 3144
MspI CCGG 7 cut(s) 26, 49, 89, 98, 194, 218, 2227
MspR9I CCNGG 6 cut(s) 49, 271, 927, 988, 2227, 2376
MunI CAATTG 4 cut(s) 1179, 2846, 3177, 3435
Mva1269I GAATGC 2 cut(s) 611, 988
MvaI CCWGG 4 cut(s) 271, 927, 988, 2376
NaeI GCCGGC 2 cut(s) 90, 195
NciI CCSGG 2 cut(s) 49, 2227
NdeI CATATG 2 cut(s) 1894, 3352
NgoMIV GCCGGC 2 cut(s) 88, 193
NlaIV GGNNCC 6 cut(s) 47, 96, 1612, 1847, 2887, 3105
NmuCI GTSAC 5 cut(s) 1079, 1115, 1330, 2380, 2546
NsiI ATGCAT 3 cut(s) 611, 1833, 2250
NspI RCATGY 4 cut(s) 411, 613, 2237, 3064
NspV TTCGAA 1 cut(s) 413
PaeI GCATGC 1 cut(s) 613
PaeR7I CTCGAG 1 cut(s) 3482
PagI TCATGA 3 cut(s) 601, 1459, 2149
PceI AGGCCT 1 cut(s) 3005
PciI ACATGT 2 cut(s) 2233, 3060
PctI GAATGC 2 cut(s) 611, 988
PdiI GCCGGC 2 cut(s) 90, 195
PdmI GAANNNNTTC 1 cut(s) 3364
PflMI CCANNNNNTGG 1 cut(s) 1411
PfoI TCCNGGA 1 cut(s) 2374
Ple19I CGATCG 1 cut(s) 251
PleI GAGTC 5 cut(s) 177, 880, 1112, 2342, 3136
PpsI GAGTC 5 cut(s) 177, 880, 1112, 2342, 3136
Ppu21I YACGTR 1 cut(s) 3653
PscI ACATGT 2 cut(s) 2233, 3060
PsiI TTATAA 2 cut(s) 966, 1101
Psp124BI GAGCTC 1 cut(s) 1248
Psp6I CCWGG 4 cut(s) 269, 925, 986, 2374
PspFI CCCAGC 1 cut(s) 3183
PspGI CCWGG 4 cut(s) 269, 925, 986, 2374
PspN4I GGNNCC 6 cut(s) 47, 96, 1612, 1847, 2887, 3105
PspOMI GGGCCC 1 cut(s) 1610
PspPI GGNCC 7 cut(s) 45, 305, 593, 1175, 1610, 1611, 1649
PspXI VCTCGAGB 1 cut(s) 3482
PstI CTGCAG 3 cut(s) 1201, 1753, 2422
PstNI CAGNNNCTG 2 cut(s) 1936, 2174
PsuI RGATCY 4 cut(s) 366, 1057, 1140, 2617
PvuI CGATCG 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 3144
RsaI GTAC 8 cut(s) 262, 971, 1396, 2165, 2209, 2367, 2673, 3441
RsaNI GTAC 8 cut(s) 261, 970, 1395, 2164, 2208, 2366, 2672, 3440
RseI CAYNNNNRTG 1 cut(s) 1258
SacI GAGCTC 1 cut(s) 1248
SalI GTCGAC 1 cut(s) 67
SaqAI TTAA 8 cut(s) 222, 647, 1233, 2030, 2414, 2720, 2877, 3679
Sau96I GGNCC 7 cut(s) 45, 305, 593, 1175, 1610, 1611, 1649
SchI GAGTC 5 cut(s) 178, 881, 1112, 2342, 3137
ScrFI CCNGG 6 cut(s) 49, 271, 927, 988, 2227, 2376
SduI GDGCHC 7 cut(s) 502, 635, 748, 1109, 1248, 1614, 2888
SfcI CTRYAG 5 cut(s) 1197, 1749, 2304, 2418, 2556
Sfr274I CTCGAG 1 cut(s) 3482
SfuI TTCGAA 1 cut(s) 413
SinI GGWCC 4 cut(s) 45, 305, 593, 1649
SlaI CTCGAG 1 cut(s) 3482
SmiMI CAYNNNNRTG 1 cut(s) 1258
SmlI CTYRAG 2 cut(s) 1781, 3482
SmoI CTYRAG 2 cut(s) 1781, 3482
SpeI ACTAGT 1 cut(s) 1067
SphI GCATGC 1 cut(s) 613
SseBI AGGCCT 1 cut(s) 3005
SspI AATATT 3 cut(s) 624, 1620, 2783
SspMI CTAG 4 cut(s) 666, 1068, 2777, 3635
SstI GAGCTC 1 cut(s) 1248
StuI AGGCCT 1 cut(s) 3005
StyD4I CCNGG 6 cut(s) 47, 269, 925, 986, 2225, 2374
StyI CCWWGG 3 cut(s) 1849, 1952, 2338
TaiI ACGT 3 cut(s) 1567, 2677, 3655
TaqI TCGA 6 cut(s) 68, 413, 450, 2679, 3483, 3546
TatI WGTACW 2 cut(s) 260, 2163
TauI GCSGC 5 cut(s) 16, 200, 203, 217, 2868
Tru1I TTAA 8 cut(s) 222, 647, 1233, 2030, 2414, 2720, 2877, 3679
Tru9I TTAA 8 cut(s) 222, 647, 1233, 2030, 2414, 2720, 2877, 3679
TscAI CASTG 8 cut(s) 728, 1255, 1335, 2164, 2640, 2929, 3478, 3601
TseFI GTSAC 5 cut(s) 1079, 1115, 1330, 2380, 2546
TseI GCWGC 8 cut(s) 886, 1199, 1340, 1577, 1748, 1936, 2862, 2987
Tsp45I GTSAC 5 cut(s) 1079, 1115, 1330, 2380, 2546
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 8 cut(s) 728, 1255, 1335, 2164, 2640, 2929, 3478, 3601
Van91I CCANNNNNTGG 1 cut(s) 1411
VneI GTGCAC 1 cut(s) 1105
VpaK11BI GGWCC 4 cut(s) 45, 305, 593, 1649
XapI RAATTY 6 cut(s) 649, 1316, 2426, 2740, 2952, 3364
XbaI TCTAGA 1 cut(s) 2776
XceI RCATGY 4 cut(s) 411, 613, 2237, 3064
XcmI CCANNNNNNNNNTGG 1 cut(s) 2336
XhoI CTCGAG 1 cut(s) 3482
XmiI GTMKAC 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 3364
XspI CTAG 4 cut(s) 666, 1068, 2777, 3635
Zsp2I ATGCAT 3 cut(s) 611, 1833, 2250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.