Rmu_sc0005000.1_g000001
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005000.1
OG0006838
Physical Location & Seq
Reverse (-)
1874 .. 9800
7927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005000.1_g000001.1.cds

Sequence Viewer

Length: 3792 bp
atggacgaatcgccgcagaaatctccggcgacgccgaaacggcggacccggcggagactggtgcagtcgacgctggttcttgtgaagccggcggagccggtggagaacggcgatccgaagaaggagaatagcgaagagaagaacgatcaggatgaggagttctgcgggagtcagagcaagaggaagaggaagccggcggtggccaagaagacgccgccggttaaagctcctaagaagaacggtaagcgatcggcgaatagtacaccgacgaagaagaatggaaaagatgtggtggttgaagatggacctctgataatgcctgatttgagattagaggccaaattgagaagcgaggaaatctcacggatctggacgaaggaaggaaggcaattacatcccttttttgcatgttcgaaagcggggaagaaaagtcaggaggcaactgaagtcgagggcagttcaagcttcatggggagtaaggagaaatatcttacttgtgccccaattcatgtgtttgaagatactcaggacgatgctgtgtttcttgattggagaaattggacattttgtgaggaaactagtctgacaagtggtcctcatcatgaatgcatgcagtcctcaatatttgagggctctgttgagtgcttaacttttgataaggaatgtgctcatgaaacatcatccacagtccctcagtttttgcctaatgagcaaatgaggtgctatcagcactcaaaggaagtagaggattgtgagggtggtttgttttctgagcatactggttgcatgaaggagtcagatattgagcagcagaatacatttctggaggaaaggatgtcaaacaattctggttgctgtgatcactctgagaatagcttatggacatataagtaccagccaaagaatggcagggaggtatgtggtaataatgaatctgtgaggtttttgagtgagtggcttcgttcttggtatgaacgagatcttcaaaccagtgaagatggtgacaggcaaggcattgattataagtgcactcaaagtgactcagaaagtgaagatgatgaggtcttgaagaaaaagaatgttttgttagttacagggccaattggggtatgtggtaataatgaatctgtgaggtttttgagtgactggcttcgttcttggtatgaacgagatcttcaaaccactgaagatggtgacaggcaaggcattgattataagtgcactcaaagtgactcagaaagtgaagatgatgaggtcttgaagaaaaagaatgttctgttagttacagggccaattgggagtggaaagtctgcagctatatatgcgtgtgcaaaagaacaagggattaaggttttggagctcagtgcatcagagtgtcggactggagctactgtaaaacagaagtttggagaggcgttcaaatctcgcaaatttcaaagatcagtggccaatgctgctggttcacagaacaagcttattatgaagtctcgctttgttgaggctaatggtacgacaggccaagacttggatgatgatgatgatgatcttgttgaactgatacccatatcagatgaagaaagtcatgatgctactggaacttctgtaacatttgccttcaaggaggactgttgcaaagataaacttgttatactttttgaggatgtggacataacttttcaagaagaacgtggttttattgcagcaattcagcagatagctaaaacggcgaatgggcccataatattgaccagcaatagtccaaaacctgacctgccagacagttttgatagattacaagtgcatttcatgttgccatcatcagtggagctgtattcccatgcatatatggtttgtgctgcagagagagccagcatacagccctatttacttgagcgatttattgaatgttgtggaggagatattcgaaaaattattatgcatcttcagttctggtgccaaggaagaagttttagaaaagatacaaaaatgatgcgagagacgtatggttcattgctatttgatgttgaggctggtcatcagatgctgccaaaattattaccttgggatttaccttctcagttatctgatttagtagagaaagagataaccaagtcattatcaatgatggaagaaggtttaagcccaatggaggtagatgacaatacagaagtgcaatgtagtttgaacatggcttatagtgaaatggaaaatatggaggccaagaaggtagcaatgctgagcaggaatggctatactcatgagtgcagtgagtatacagcaactgatgctgctcccgacttttctaatgattcaagtacctcatttcctttcccccggcgacatgttcggaggatgcatggtgttatattgtcttctgattctgaagatgactttatgaagaatggatatcctacagttacagataaagatactaaccatgaaatccttggagctgactcattatcagagatgctgctttttcctggagtgacaaatatagatagaggactttatgactgtttaaccgcagatgaatttcacacaagtgaaatgtgcaactttgcagatatatcctgtgtgccagaatcgtcttttgttcctgaaactcaaatggataatgaaacaaatttcttatctcaaacaatgtcttctggtcactttgcaacagctataaacgaagtatttttgggcgatgaattaccagttgaagacaataatgaaatagatctgttatctcaaacagtgtcttctggccattttgctaacaccatgaatgaagtacgtttcgatgaagaattacctgttgaagacaacaatcctgctcaattaaaatcaggattacagataaattttgataaggtgggaaataattgtgatgccattctagaatattctcatcaggagttggaagattctcaaagtgaacatggggagactgttgcaagagcttatcaattgatggatgagtgcagccgcatggattttaataagggctccaagtttatacaggagaaaaaaacctcagcagtcagtgatcttgtacaagattcatggaacaaacttcgtggatggcgcaatgatctaaggcagtatgctgcatcagaacaagaggcctctcagattgttatgcttgcttatagaatgagcaatttgatctcggaaactgacatgttgttttctaaatgccaaccactaatgagtgattctgtggaaccatcaatgatcttctcggatgagttggattcattcagctggtgtgatgagcggttgcaattggcatccacaattgcccagcatggattttgcttctatgccaagggcatttcttctgtaggatcaaatgtaggttgtgtgaggagggtggacgtggatatagcctctgagatgttggctaacacaactaatatgatggccttaggtaagttagttggacagggtatgagaacaagtaagacatcatatgctggaagaaattcagagattagtcagccaaatgtgattacaagtgaaatcaagtcacatatatttgatgcaatccagtcaattgtaccttccagattcaacttgacattgagaggcagtgcatacctcgagtatctttcctcacttcgccacatttcaagatcagaagcttctcgtttgtcaaaaggcgtcgagatgaccacaagaagaagaaggaggagggttgctccacactacctgagcagtggtgcaagaatgttgtctcctgaacagttatcattgctagatcagaataacttatgtgggaagaccacctcctcttccaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0001775 GO:0002200 GO:0002204 GO:0002208 GO:0002250 GO:0002252 GO:0002263 GO:0002285 GO:0002312 GO:0002366 GO:0002376 GO:0002377 GO:0002381 GO:0002440 GO:0002443 GO:0002449 GO:0002460 GO:0002520 GO:0002562 GO:0002637 GO:0002639 GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002703 GO:0002705 GO:0002706 GO:0002708 GO:0002712 GO:0002714 GO:0002819 GO:0002821 GO:0002822 GO:0002824 GO:0002889 GO:0002891 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006310 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006955 GO:0006974 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0008284 GO:0008630 GO:0009058 GO:0009059 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010564 GO:0010604 GO:0010646 GO:0010648 GO:0010941 GO:0012501 GO:0016064 GO:0016444 GO:0016445 GO:0016447 GO:0019219 GO:0019222 GO:0019724 GO:0022402 GO:0023051 GO:0023052 GO:0023057 GO:0030888 GO:0030890 GO:0031323 GO:0031325 GO:0032501 GO:0032502 GO:0032943 GO:0032944 GO:0032946 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0035556 GO:0042100 GO:0042113 GO:0042127 GO:0042770 GO:0042771 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045190 GO:0045191 GO:0045321 GO:0045830 GO:0045911 GO:0045935 GO:0046483 GO:0046649 GO:0046651 GO:0048302 GO:0048304 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048731 GO:0048856 GO:0050670 GO:0050671 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0050867 GO:0050871 GO:0050896 GO:0051052 GO:0051054 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051249 GO:0051251 GO:0051716 GO:0051726 GO:0060255 GO:0060548 GO:0065007 GO:0070661 GO:0070663 GO:0070665 GO:0071704 GO:0072331 GO:0072332 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097190 GO:0097193 GO:1901360 GO:1901576 GO:1901796 GO:1901797 GO:1901987 GO:1901990 GO:1902165 GO:1902166 GO:1902229 GO:1902230 GO:1902253 GO:1902254 GO:1902531 GO:1902532 GO:2000026 GO:2001020 GO:2001021 GO:2001233 GO:2001234 GO:2001242 GO:2001243
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Rad17

Protein Analysis

1263

Amino Acids

142.03

Weight (kDa)

4.95

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1023, 1215
Acc36I ACCTGC 1 cut(s) 1779
AccB1I GGYRCC 1 cut(s) 1953
AccB7I CCANNNNNTGG 2 cut(s) 905, 1525
AccBSI CCGCTC 1 cut(s) 3265
AccI GTMKAC 2 cut(s) 68, 2273
AclWI GGATC 3 cut(s) 107, 374, 3343
AcoI YGGCCR 3 cut(s) 201, 1446, 2752
AcsI RAATTY 5 cut(s) 1430, 2534, 2626, 2848, 3472
AcuI CTGAAG 4 cut(s) 465, 1206, 1928, 2403
AcyI GRCGYC 3 cut(s) 32, 212, 3651
AfaI GTAC 7 cut(s) 262, 893, 1510, 2317, 2781, 3042, 3549
AfiI CCNNNNNNNGG 3 cut(s) 905, 1525, 2149
AflIII ACRYGT 2 cut(s) 2341, 3168
AhdI GACNNNNNGTC 1 cut(s) 591
AhlI ACTAGT 1 cut(s) 578
AjiI CACGTC 1 cut(s) 3367
AjnI CCWGG 1 cut(s) 2482
AleI CACNNNNGTG 1 cut(s) 2544
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
Alw21I GWGCWC 4 cut(s) 670, 1031, 1223, 1362
Alw26I GTCTC 5 cut(s) 49, 1491, 1991, 2927, 3729
Alw44I GTGCAC 2 cut(s) 1027, 1219
AlwI GGATC 3 cut(s) 107, 374, 3343
AlwNI CAGNNNCTG 2 cut(s) 2044, 2282
Ama87I CYCGRG 1 cut(s) 3590
ApaI GGGCCC 1 cut(s) 1737
ApaLI GTGCAC 2 cut(s) 1027, 1219
ApoI RAATTY 5 cut(s) 1430, 2534, 2626, 2848, 3472
Asp700I GAANNNNTTC 1 cut(s) 3472
AspLEI GCGC 1 cut(s) 3075
AspS9I GGNCC 7 cut(s) 45, 305, 593, 1097, 1289, 1733, 1734
AsuC2I CCSGG 2 cut(s) 49, 2335
AsuHPI GGTGA 2 cut(s) 1013, 1205
AsuII TTCGAA 2 cut(s) 413, 1924
AvaI CYCGRG 1 cut(s) 3590
AvaII GGWCC 3 cut(s) 45, 305, 593
AxyI CCTNAGG 1 cut(s) 3415
BaeGI GKGCMC 4 cut(s) 502, 1031, 1223, 1737
BalI TGGCCA 3 cut(s) 203, 1448, 2754
BanI GGYRCC 1 cut(s) 1953
BanII GRGCYC 4 cut(s) 635, 1362, 1737, 2996
BbsI GAAGAC 7 cut(s) 215, 2364, 2640, 2715, 2739, 2814, 3776
Bbv12I GWGCWC 4 cut(s) 670, 1031, 1223, 1362
BbvCI CCTCAGC 1 cut(s) 3022
BccI CCATC 9 cut(s) 296, 992, 1184, 1822, 2119, 2953, 3063, 3223, 3403
BceAI ACGGC 3 cut(s) 56, 124, 1740
BciT130I CCWGG 1 cut(s) 2484
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 2 cut(s) 49, 2335
BcoDI GTCTC 5 cut(s) 49, 1491, 1991, 2927, 3729
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 3 cut(s) 579, 2885, 3746
BfmI CTRYAG 4 cut(s) 1311, 1857, 2412, 3330
BfuAI ACCTGC 1 cut(s) 1779
BglI GCCNNNNNGGC 1 cut(s) 40
BglII AGATCT 3 cut(s) 979, 1171, 2725
BlpI GCTNAGC 1 cut(s) 2237
Bme1390I CCNGG 3 cut(s) 49, 2335, 2484
Bme18I GGWCC 3 cut(s) 45, 305, 593
BmeRI GACNNNNNGTC 1 cut(s) 591
BmeT110I CYCGRG 1 cut(s) 3590
BmgBI CACGTC 1 cut(s) 3367
BmgT120I GGNCC 7 cut(s) 45, 305, 593, 1097, 1289, 1733, 1734
BmiI GGNNCC 6 cut(s) 47, 96, 1735, 1955, 2995, 3213
BmrFI CCNGG 3 cut(s) 49, 2335, 2484
BpiI GAAGAC 7 cut(s) 215, 2364, 2640, 2715, 2739, 2814, 3776
BplI GAGNNNNNCTC 4 cut(s) 344, 376, 3673, 3705
BpmI CTGGAG 3 cut(s) 845, 1404, 2505
Bpu10I CCTNAGC 2 cut(s) 3022, 3701
Bpu1102I GCTNAGC 1 cut(s) 2237
Bpu14I TTCGAA 2 cut(s) 413, 1924
BpuEI CTTGAG 1 cut(s) 1910
BpuMI CCSGG 2 cut(s) 49, 2335
BsaBI GATNNNNATC 1 cut(s) 1542
BsaHI GRCGYC 3 cut(s) 32, 212, 3651
BsaJI CCNNGG 5 cut(s) 1957, 2060, 2333, 2446, 3315
BsaXI ACNNNNNCTCC 2 cut(s) 1377, 1407
Bsc4I CCNNNNNNNGG 3 cut(s) 905, 1525, 2149
Bse118I RCCGGY 4 cut(s) 88, 97, 193, 217
Bse1I ACTGG 8 cut(s) 63, 784, 990, 1151, 1387, 1597, 2702, 3538
Bse21I CCTNAGG 1 cut(s) 3415
Bse3DI GCAATG 5 cut(s) 2009, 2180, 2238, 3082, 3740
Bse8I GATNNNNATC 1 cut(s) 1542
BseBI CCWGG 1 cut(s) 2484
BseDI CCNNGG 5 cut(s) 1957, 2060, 2333, 2446, 3315
BseJI GATNNNNATC 1 cut(s) 1542
BseLI CCNNNNNNNGG 3 cut(s) 905, 1525, 2149
BseMI GCAATG 5 cut(s) 2009, 2180, 2238, 3082, 3740
BseNI ACTGG 8 cut(s) 63, 784, 990, 1151, 1387, 1597, 2702, 3538
BseRI GAGGAG 5 cut(s) 170, 1929, 3370, 3694, 3769
BseSI GKGCMC 4 cut(s) 502, 1031, 1223, 1737
BseYI CCCAGC 1 cut(s) 3291
BsgI GTGCAG 3 cut(s) 83, 2284, 2989
Bsh1285I CGRYCG 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 1953
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 4 cut(s) 670, 1031, 1223, 1362
BsiHKCI CYCGRG 1 cut(s) 3590
BsiSI CCGG 7 cut(s) 26, 49, 89, 98, 194, 218, 2335
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 3 cut(s) 905, 1525, 2149
BsmAI GTCTC 5 cut(s) 49, 1491, 1991, 2927, 3729
BsmBI CGTCTC 1 cut(s) 1991
BsmFI GGGAC 1 cut(s) 674
BsmI GAATGC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 3590
Bsp119I TTCGAA 2 cut(s) 413, 1924
Bsp120I GGGCCC 1 cut(s) 1733
Bsp1286I GDGCHC 8 cut(s) 502, 635, 670, 1031, 1223, 1362, 1737, 2996
Bsp1407I TGTACA 1 cut(s) 3040
Bsp1720I GCTNAGC 1 cut(s) 2237
BspHI TCATGA 4 cut(s) 601, 670, 1582, 2257
BspLI GGNNCC 6 cut(s) 47, 96, 1735, 1955, 2995, 3213
BspMAI CTGCAG 2 cut(s) 1315, 1861
BspMI ACCTGC 1 cut(s) 1779
BspPI GGATC 3 cut(s) 107, 374, 3343
BspT104I TTCGAA 2 cut(s) 413, 1924
BspT107I GGYRCC 1 cut(s) 1953
BsrBI CCGCTC 1 cut(s) 3265
BsrDI GCAATG 5 cut(s) 2009, 2180, 2238, 3082, 3740
BsrFI RCCGGY 4 cut(s) 88, 97, 193, 217
BsrGI TGTACA 1 cut(s) 3040
BsrI ACTGG 8 cut(s) 63, 784, 990, 1151, 1387, 1597, 2702, 3538
BssAI RCCGGY 4 cut(s) 88, 97, 193, 217
BssECI CCNNGG 5 cut(s) 1957, 2060, 2333, 2446, 3315
BssNAI GTATAC 1 cut(s) 2274
BssNI GRCGYC 3 cut(s) 32, 212, 3651
BssT1I CCWWGG 4 cut(s) 1957, 2060, 2446, 3315
Bst1107I GTATAC 1 cut(s) 2274
Bst2UI CCWGG 1 cut(s) 2484
Bst6I CTCTTC 3 cut(s) 129, 179, 3787
BstACI GRCGYC 3 cut(s) 32, 212, 3651
BstAPI GCANNNNNTGC 1 cut(s) 2285
BstAUI TGTACA 1 cut(s) 3040
BstBI TTCGAA 2 cut(s) 413, 1924
BstC8I GCNNGC 5 cut(s) 90, 195, 611, 1870, 3132
BstHHI GCGC 1 cut(s) 3075
BstMAI GTCTC 5 cut(s) 49, 1491, 1991, 2927, 3729
BstMCI CGRYCG 1 cut(s) 251
BstNI CCWGG 1 cut(s) 2484
BstNSI RCATGY 4 cut(s) 411, 613, 2345, 3172
BstSCI CCNGG 3 cut(s) 47, 2333, 2482
BstSFI CTRYAG 4 cut(s) 1311, 1857, 2412, 3330
BstSLI GKGCMC 4 cut(s) 502, 1031, 1223, 1737
BstV2I GAAGAC 7 cut(s) 215, 2364, 2640, 2715, 2739, 2814, 3776
BstX2I RGATCY 4 cut(s) 366, 979, 1171, 2725
BstYI RGATCY 4 cut(s) 366, 979, 1171, 2725
BstZ17I GTATAC 1 cut(s) 2274
Bsu36I CCTNAGG 1 cut(s) 3415
BtgZI GCGATG 1 cut(s) 2706
BtrI CACGTC 1 cut(s) 3367
BtsI GCAGTG 3 cut(s) 2272, 3586, 3712
BveI ACCTGC 1 cut(s) 1779
Cac8I GCNNGC 5 cut(s) 90, 195, 611, 1870, 3132
CaiI CAGNNNCTG 2 cut(s) 2044, 2282
CciI TCATGA 4 cut(s) 601, 670, 1582, 2257
CfoI GCGC 1 cut(s) 3075
Cfr10I RCCGGY 4 cut(s) 88, 97, 193, 217
Cfr13I GGNCC 7 cut(s) 45, 305, 593, 1097, 1289, 1733, 1734
CseI GACGC 4 cut(s) 40, 79, 220, 3640
Csp6I GTAC 7 cut(s) 261, 892, 1509, 2316, 2780, 3041, 3548
CspCI CAANNNNNGTGG 2 cut(s) 3046, 3081
CviQI GTAC 7 cut(s) 261, 892, 1509, 2316, 2780, 3041, 3548
DriI GACNNNNNGTC 1 cut(s) 591
EaeI YGGCCR 3 cut(s) 201, 1446, 2752
Eam1104I CTCTTC 3 cut(s) 129, 179, 3787
Eam1105I GACNNNNNGTC 1 cut(s) 591
EarI CTCTTC 3 cut(s) 129, 179, 3787
EciI GGCGGA 3 cut(s) 58, 67, 107
Ecl136II GAGCTC 1 cut(s) 1360
Eco130I CCWWGG 4 cut(s) 1957, 2060, 2446, 3315
Eco147I AGGCCT 1 cut(s) 3113
Eco24I GRGCYC 4 cut(s) 635, 1362, 1737, 2996
Eco32I GATATC 1 cut(s) 2408
Eco47I GGWCC 3 cut(s) 45, 305, 593
Eco53kI GAGCTC 1 cut(s) 1360
Eco57I CTGAAG 4 cut(s) 465, 1206, 1928, 2403
Eco81I CCTNAGG 1 cut(s) 3415
Eco88I CYCGRG 1 cut(s) 3590
EcoICRI GAGCTC 1 cut(s) 1360
EcoRII CCWGG 1 cut(s) 2482
EcoRV GATATC 1 cut(s) 2408
EcoT14I CCWWGG 4 cut(s) 1957, 2060, 2446, 3315
EcoT22I ATGCAT 4 cut(s) 611, 1843, 1941, 2358
EcoT38I GRGCYC 4 cut(s) 635, 1362, 1737, 2996
ErhI CCWWGG 4 cut(s) 1957, 2060, 2446, 3315
Esp3I CGTCTC 1 cut(s) 1991
FalI AAGNNNNNCTT 4 cut(s) 1475, 1507, 1626, 1658
FaqI GGGAC 1 cut(s) 674
FauI CCCGC 2 cut(s) 158, 412
FauNDI CATATG 1 cut(s) 3460
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 2 cut(s) 68, 2273
FriOI GRGCYC 4 cut(s) 635, 1362, 1737, 2996
FspBI CTAG 3 cut(s) 579, 2885, 3746
GlaI GCGC 1 cut(s) 3074
GsaI CCCAGC 1 cut(s) 3295
GsuI CTGGAG 3 cut(s) 845, 1404, 2505
HapII CCGG 7 cut(s) 26, 49, 89, 98, 194, 218, 2335
HgaI GACGC 4 cut(s) 40, 79, 220, 3640
HhaI GCGC 1 cut(s) 3075
Hin1I GRCGYC 3 cut(s) 32, 212, 3651
Hin6I GCGC 1 cut(s) 3073
HinP1I GCGC 1 cut(s) 3073
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 3 cut(s) 463, 1472, 3630
HpaII CCGG 7 cut(s) 26, 49, 89, 98, 194, 218, 2335
HphI GGTGA 2 cut(s) 1013, 1205
Hpy166II GTNNAC 9 cut(s) 69, 263, 1029, 1221, 1463, 1666, 2274, 2924, 3364
Hpy8I GTNNAC 9 cut(s) 69, 263, 1029, 1221, 1463, 1666, 2274, 2924, 3364
Hpy99I CGWCG 4 cut(s) 34, 73, 271, 3656
HpyCH4IV ACGT 4 cut(s) 1687, 2000, 2782, 3366
HpySE526I ACGT 4 cut(s) 1687, 2000, 2782, 3366
Hsp92I GRCGYC 3 cut(s) 32, 212, 3651
HspAI GCGC 1 cut(s) 3073
KroI GCCGGC 2 cut(s) 88, 193
KroNI GCCGGC 2 cut(s) 90, 195
Ksp22I TGATCA 1 cut(s) 859
LmnI GCTCC 9 cut(s) 94, 232, 1357, 1385, 1825, 2296, 2450, 2999, 3694
MaeI CTAG 3 cut(s) 579, 2885, 3746
MaeII ACGT 4 cut(s) 1687, 2000, 2782, 3366
MbiI CCGCTC 1 cut(s) 3265
MfeI CAATTG 6 cut(s) 1101, 1293, 2954, 3272, 3285, 3543
MflI RGATCY 4 cut(s) 366, 979, 1171, 2725
MhlI GDGCHC 8 cut(s) 502, 635, 670, 1031, 1223, 1362, 1737, 2996
MlsI TGGCCA 3 cut(s) 203, 1448, 2754
MluNI TGGCCA 3 cut(s) 203, 1448, 2754
MlyI GAGTC 5 cut(s) 178, 803, 1034, 1226, 2450
MmeI TCCRAC 4 cut(s) 1358, 2886, 3219, 3409
Mox20I TGGCCA 3 cut(s) 203, 1448, 2754
Mph1103I ATGCAT 4 cut(s) 611, 1843, 1941, 2358
MroNI GCCGGC 2 cut(s) 88, 193
MroXI GAANNNNTTC 1 cut(s) 3472
MscI TGGCCA 3 cut(s) 203, 1448, 2754
MseI TTAA 8 cut(s) 222, 647, 1347, 2138, 2522, 2828, 2985, 3790
MslI CAYNNNNRTG 2 cut(s) 1372, 2544
Msp20I TGGCCA 3 cut(s) 203, 1448, 2754
MspA1I CMGCKG 1 cut(s) 3252
MspI CCGG 7 cut(s) 26, 49, 89, 98, 194, 218, 2335
MspR9I CCNGG 3 cut(s) 49, 2335, 2484
MunI CAATTG 6 cut(s) 1101, 1293, 2954, 3272, 3285, 3543
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 1 cut(s) 2484
NaeI GCCGGC 2 cut(s) 90, 195
NciI CCSGG 2 cut(s) 49, 2335
NdeI CATATG 1 cut(s) 3460
NgoMIV GCCGGC 2 cut(s) 88, 193
NlaIV GGNNCC 6 cut(s) 47, 96, 1735, 1955, 2995, 3213
NmuCI GTSAC 8 cut(s) 1001, 1037, 1142, 1193, 1229, 2488, 2654, 3516
NsiI ATGCAT 4 cut(s) 611, 1843, 1941, 2358
NspI RCATGY 4 cut(s) 411, 613, 2345, 3172
NspV TTCGAA 2 cut(s) 413, 1924
OliI CACNNNNGTG 1 cut(s) 2544
PaeI GCATGC 1 cut(s) 613
PaeR7I CTCGAG 1 cut(s) 3590
PagI TCATGA 4 cut(s) 601, 670, 1582, 2257
PceI AGGCCT 1 cut(s) 3113
PciI ACATGT 2 cut(s) 2341, 3168
PctI GAATGC 1 cut(s) 611
PdiI GCCGGC 2 cut(s) 90, 195
PdmI GAANNNNTTC 1 cut(s) 3472
PflMI CCANNNNNTGG 2 cut(s) 905, 1525
PfoI TCCNGGA 1 cut(s) 2482
Ple19I CGATCG 1 cut(s) 251
PleI GAGTC 5 cut(s) 177, 802, 1034, 1226, 2450
PpsI GAGTC 5 cut(s) 177, 802, 1034, 1226, 2450
PscI ACATGT 2 cut(s) 2341, 3168
PsiI TTATAA 2 cut(s) 1023, 1215
Psp124BI GAGCTC 1 cut(s) 1362
Psp6I CCWGG 1 cut(s) 2482
PspFI CCCAGC 1 cut(s) 3291
PspGI CCWGG 1 cut(s) 2482
PspN4I GGNNCC 6 cut(s) 47, 96, 1735, 1955, 2995, 3213
PspOMI GGGCCC 1 cut(s) 1733
PspPI GGNCC 7 cut(s) 45, 305, 593, 1097, 1289, 1733, 1734
PspXI VCTCGAGB 1 cut(s) 3590
PstI CTGCAG 2 cut(s) 1315, 1861
PstNI CAGNNNCTG 2 cut(s) 2044, 2282
PsuI RGATCY 4 cut(s) 366, 979, 1171, 2725
PvuI CGATCG 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 3252
RsaI GTAC 7 cut(s) 262, 893, 1510, 2317, 2781, 3042, 3549
RsaNI GTAC 7 cut(s) 261, 892, 1509, 2316, 2780, 3041, 3548
RseI CAYNNNNRTG 2 cut(s) 1372, 2544
SacI GAGCTC 1 cut(s) 1362
SalI GTCGAC 1 cut(s) 67
SaqAI TTAA 8 cut(s) 222, 647, 1347, 2138, 2522, 2828, 2985, 3790
Sau96I GGNCC 7 cut(s) 45, 305, 593, 1097, 1289, 1733, 1734
SchI GAGTC 5 cut(s) 178, 803, 1034, 1226, 2450
ScrFI CCNGG 3 cut(s) 49, 2335, 2484
SduI GDGCHC 8 cut(s) 502, 635, 670, 1031, 1223, 1362, 1737, 2996
SfcI CTRYAG 4 cut(s) 1311, 1857, 2412, 3330
Sfr274I CTCGAG 1 cut(s) 3590
SfuI TTCGAA 2 cut(s) 413, 1924
SinI GGWCC 3 cut(s) 45, 305, 593
SlaI CTCGAG 1 cut(s) 3590
SmiMI CAYNNNNRTG 2 cut(s) 1372, 2544
SmlI CTYRAG 2 cut(s) 1889, 3590
SmoI CTYRAG 2 cut(s) 1889, 3590
SpeI ACTAGT 1 cut(s) 578
SphI GCATGC 1 cut(s) 613
SseBI AGGCCT 1 cut(s) 3113
SspI AATATT 3 cut(s) 624, 1743, 2891
SspMI CTAG 3 cut(s) 579, 2885, 3746
SstI GAGCTC 1 cut(s) 1362
StuI AGGCCT 1 cut(s) 3113
StyD4I CCNGG 3 cut(s) 47, 2333, 2482
StyI CCWWGG 4 cut(s) 1957, 2060, 2446, 3315
TaiI ACGT 4 cut(s) 1690, 2003, 2785, 3369
TaqI TCGA 7 cut(s) 68, 413, 450, 1924, 2787, 3591, 3654
TatI WGTACW 2 cut(s) 260, 3040
TauI GCSGC 3 cut(s) 16, 217, 2976
Tru1I TTAA 8 cut(s) 222, 647, 1347, 2138, 2522, 2828, 2985, 3790
Tru9I TTAA 8 cut(s) 222, 647, 1347, 2138, 2522, 2828, 2985, 3790
TseFI GTSAC 8 cut(s) 1001, 1037, 1142, 1193, 1229, 2488, 2654, 3516
Tsp45I GTSAC 8 cut(s) 1001, 1037, 1142, 1193, 1229, 2488, 2654, 3516
TspGWI ACGGA 1 cut(s) 379
Van91I CCANNNNNTGG 2 cut(s) 905, 1525
VneI GTGCAC 2 cut(s) 1027, 1219
VpaK11BI GGWCC 3 cut(s) 45, 305, 593
XapI RAATTY 5 cut(s) 1430, 2534, 2626, 2848, 3472
XbaI TCTAGA 1 cut(s) 2884
XceI RCATGY 4 cut(s) 411, 613, 2345, 3172
XcmI CCANNNNNNNNNTGG 2 cut(s) 902, 2444
XhoI CTCGAG 1 cut(s) 3590
XmiI GTMKAC 2 cut(s) 68, 2273
XmnI GAANNNNTTC 1 cut(s) 3472
XspI CTAG 3 cut(s) 579, 2885, 3746
Zsp2I ATGCAT 4 cut(s) 611, 1843, 1941, 2358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.