Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016273

Physical Location & Seq

Genomic Coordinates Reverse (-)

24500927 .. 24504074

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCCGCCTCCAAAGCTTCAGTGATGGCTCTCATGGCTGTCTTCGTCGTCGTCATCTCTCTCGGTGTTGCTCAGGCCGCTGAGGCTCCTGCTCCCAGCCCTGTGTCTCCCGCCGCCTCCATCTCGCCGTCGTTTGTTTCTGGTCTCGTTGCCGCCGCCGTCGCTCTGGTGTTCGGATCTGCTCTCAGGTTCATAAACCCCAAGTCAGCTTGTAGAAGCGGGCAGCTGCCTGCCCTACGTGCTGCCCTGACTCCATCGATCCACCTTGCTATAAATACCATCACAGTGACAATGGCAGGCACAAAAGCTCCGTTGATGGCTCTCGTGGCCGTGCTCATCATGGTCATCTCTCTCGCTGGCGTAGCTCAGGCCCATGAAGGTCATGCTCATGCTCCTGAACCGGCTACCTCCCCGGCAGCCTCCATCTCTCCCTCGTTCGTTTCTGCTTTCGTCGCCGCTGCAGTCGCCCTCGTTTCGGGATCTGCTCTCATGGAGCAATCGCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

16.59

Weight (kDa)

9.19

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32230
rosa_chinensis	RchiOBHm_Chr6g0310451 RchiOBHm_Chr6g0310461
rosa_laevigata	RLG00000010481
rosa_multiflora	Rmu_sc0006629.1_g000002 Rmu_sc0020729.1_g000013
rosa_roxburghii	Rroxscaffold_3G00222400 Rroxscaffold_7G00158500 Rroxscaffold_7G00158510
rosa_rugosa	Rorug06G0380500
rosa_samantha	Rh6AG494400 Rh6AG494500 Rh6BG504200 Rh6CG509400 Rh6DG495400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AciI	CCGC	8 cut(s)	6, 78, 111, 114, 153, 156, 219, 456
AclWI	GGATC	3 cut(s)	184, 253, 487
AcoI	YGGCCR	2 cut(s)	3, 327
AfiI	CCNNNNNNNGG	1 cut(s)	475
AluBI	AGCT	5 cut(s)	17, 209, 226, 308, 365
AluI	AGCT	5 cut(s)	17, 209, 226, 308, 365
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	111, 149
AlwI	GGATC	3 cut(s)	184, 253, 487
AoxI	GGCC	4 cut(s)	3, 75, 327, 369
ApeKI	GCWGC	5 cut(s)	223, 226, 242, 416, 458
AspS9I	GGNCC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	413
BauI	CACGAG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	213, 229, 235, 428, 445
BccI	CCATC	6 cut(s)	19, 128, 262, 287, 310, 431
BceAI	ACGGC	3 cut(s)	112, 143, 314
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	111, 149
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	3 cut(s)	72, 81, 366
BpuMI	CCSGG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse118I	RCCGGY	1 cut(s)	400
BseCI	ATCGAT	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	4 cut(s)	72, 86, 199, 380
BseXI	GCAGC	5 cut(s)	213, 229, 235, 428, 445
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	4 cut(s)	5, 77, 329, 371
BshVI	ATCGAT	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	401, 413
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	2 cut(s)	111, 149
BsnI	GGCC	4 cut(s)	5, 77, 329, 371
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	176, 258, 479
BspACI	CCGC	8 cut(s)	6, 78, 111, 114, 153, 156, 219, 456
BspANI	GGCC	4 cut(s)	5, 77, 329, 371
BspCNI	CTCAG	4 cut(s)	73, 85, 198, 379
BspDI	ATCGAT	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	3 cut(s)	184, 253, 487
BspTNI	GGTCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	176, 258, 479
BssSI	CACGAG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	4 cut(s)	221, 231, 298, 358
BstDEI	CTNAG	4 cut(s)	72, 81, 185, 366
BstKTI	GATC	3 cut(s)	179, 261, 482
BstMAI	GTCTC	2 cut(s)	111, 149
BstMBI	GATC	3 cut(s)	176, 258, 479
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	5 cut(s)	213, 229, 235, 428, 445
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	176, 479
BstYI	RGATCY	2 cut(s)	176, 479
Bsu15I	ATCGAT	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	5, 77, 329, 371
BsuTUI	ATCGAT	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	27, 291
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	4 cut(s)	221, 231, 298, 358
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	370
ClaI	ATCGAT	1 cut(s)	257
CviAII	CATG	6 cut(s)	34, 340, 374, 383, 389, 490
DdeI	CTNAG	4 cut(s)	72, 81, 185, 366
DpnI	GATC	3 cut(s)	178, 260, 481
DpnII	GATC	3 cut(s)	176, 258, 479
EaeI	YGGCCR	2 cut(s)	3, 327
Eco31I	GGTCTC	1 cut(s)	149
FaeI	CATG	6 cut(s)	37, 343, 377, 386, 392, 493
FaiI	YATR	8 cut(s)	35, 194, 272, 341, 375, 384, 390, 491
FatI	CATG	6 cut(s)	33, 339, 373, 382, 388, 489
FauI	CCCGC	2 cut(s)	118, 212
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	5, 77, 329, 371
HapII	CCGG	2 cut(s)	401, 413
Hin1II	CATG	6 cut(s)	37, 343, 377, 386, 392, 493
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	401, 413
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	2 cut(s)	395, 477
Hpy99I	CGWCG	5 cut(s)	50, 53, 133, 164, 455
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	461
HpyF3I	CTNAG	4 cut(s)	72, 81, 185, 366
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	6 cut(s)	37, 343, 377, 386, 392, 493
Kzo9I	GATC	3 cut(s)	176, 258, 479
LmnI	GCTCC	5 cut(s)	91, 97, 313, 397, 493
Lsp1109I	GCAGC	5 cut(s)	213, 229, 235, 428, 445
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	178, 260, 481
MboI	GATC	3 cut(s)	176, 258, 479
MboII	GAAGA	1 cut(s)	34
MflI	RGATCY	2 cut(s)	176, 479
MhlI	GDGCHC	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	19, 76, 127, 418, 430, 442, 479
MseI	TTAA	1 cut(s)	508
MslI	CAYNNNNRTG	2 cut(s)	284, 387
MspA1I	CMGCKG	3 cut(s)	80, 226, 458
MspI	CCGG	2 cut(s)	401, 413
MspR9I	CCNGG	1 cut(s)	413
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	3 cut(s)	176, 258, 479
NlaIII	CATG	6 cut(s)	37, 343, 377, 386, 392, 493
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	176, 479
PvuII	CAGCTG	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	284, 387
SaqAI	TTAA	1 cut(s)	508
Sau3AI	GATC	3 cut(s)	176, 258, 479
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	336
SfcI	CTRYAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	284, 387
SsiI	CCGC	8 cut(s)	6, 78, 111, 114, 153, 156, 219, 456
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	257
TauI	GCSGC	6 cut(s)	8, 80, 116, 155, 158, 458
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TscAI	CASTG	2 cut(s)	27, 291
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	5 cut(s)	223, 226, 242, 416, 458
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	181, 390
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	27, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.