No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g32230 |
| rosa_chinensis | RchiOBHm_Chr6g0310451 RchiOBHm_Chr6g0310461 |
| rosa_laevigata | RLG00000010481 |
| rosa_multiflora | Rmu_sc0006629.1_g000002 Rmu_sc0020729.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00222400 Rroxscaffold_7G00158500 Rroxscaffold_7G00158510 |
| rosa_rugosa | Rorug06G0380500 |
| rosa_samantha | Rh6AG494400 Rh6AG494500 Rh6BG504200 Rh6CG509400 Rh6DG495400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 89 |
| AciI | CCGC | 6 cut(s) | 75, 87, 111, 150, 153, 171 |
| AclWI | GGATC | 1 cut(s) | 181 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| Alw26I | GTCTC | 1 cut(s) | 106 |
| AlwI | GGATC | 1 cut(s) | 181 |
| AoxI | GGCC | 3 cut(s) | 72, 108, 139 |
| AsuC2I | CCSGG | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 1 cut(s) | 96 |
| BbsI | GAAGAC | 1 cut(s) | 34 |
| BccI | CCATC | 2 cut(s) | 13, 125 |
| BceAI | ACGGC | 2 cut(s) | 109, 140 |
| BcnI | CCSGG | 1 cut(s) | 98 |
| BcoDI | GTCTC | 1 cut(s) | 106 |
| BisI | GCNGC | 4 cut(s) | 75, 111, 150, 153 |
| BlsI | GCNGC | 4 cut(s) | 76, 112, 151, 154 |
| Bme1390I | CCNGG | 1 cut(s) | 98 |
| BmrFI | CCNGG | 1 cut(s) | 98 |
| BpiI | GAAGAC | 1 cut(s) | 34 |
| Bpu10I | CCTNAGC | 1 cut(s) | 69 |
| BpuMI | CCSGG | 1 cut(s) | 98 |
| BsaI | GGTCTC | 1 cut(s) | 106 |
| Bse118I | RCCGGY | 2 cut(s) | 59, 106 |
| BseMII | CTCAG | 1 cut(s) | 83 |
| BseX3I | CGGCCG | 1 cut(s) | 108 |
| BseYI | CCCAGC | 1 cut(s) | 92 |
| Bsh1285I | CGRYCG | 1 cut(s) | 111 |
| BshFI | GGCC | 3 cut(s) | 74, 110, 141 |
| BsiEI | CGRYCG | 1 cut(s) | 111 |
| BsiSI | CCGG | 3 cut(s) | 60, 98, 107 |
| BsmAI | GTCTC | 1 cut(s) | 106 |
| BsnI | GGCC | 3 cut(s) | 74, 110, 141 |
| Bso31I | GGTCTC | 1 cut(s) | 106 |
| Bsp143I | GATC | 1 cut(s) | 173 |
| BspACI | CCGC | 6 cut(s) | 75, 87, 111, 150, 153, 171 |
| BspANI | GGCC | 3 cut(s) | 74, 110, 141 |
| BspCNI | CTCAG | 1 cut(s) | 82 |
| BspPI | GGATC | 1 cut(s) | 181 |
| BspTNI | GGTCTC | 1 cut(s) | 106 |
| BsrBI | CCGCTC | 1 cut(s) | 89 |
| BsrFI | RCCGGY | 2 cut(s) | 59, 106 |
| BssAI | RCCGGY | 2 cut(s) | 59, 106 |
| BssMI | GATC | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 61 |
| BstDEI | CTNAG | 2 cut(s) | 69, 182 |
| BstKTI | GATC | 1 cut(s) | 176 |
| BstMAI | GTCTC | 1 cut(s) | 106 |
| BstMBI | GATC | 1 cut(s) | 173 |
| BstMCI | CGRYCG | 1 cut(s) | 111 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 29, 65, 74, 158 |
| BstSCI | CCNGG | 1 cut(s) | 96 |
| BstV2I | GAAGAC | 1 cut(s) | 34 |
| BstX2I | RGATCY | 1 cut(s) | 173 |
| BstYI | RGATCY | 1 cut(s) | 173 |
| BstZI | CGGCCG | 1 cut(s) | 108 |
| BsuRI | GGCC | 3 cut(s) | 74, 110, 141 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 61 |
| Cfr10I | RCCGGY | 2 cut(s) | 59, 106 |
| CviJI | RGCY | 7 cut(s) | 9, 23, 32, 74, 96, 110, 141 |
| CviKI_1 | RGCY | 7 cut(s) | 9, 23, 32, 74, 96, 110, 141 |
| DdeI | CTNAG | 2 cut(s) | 69, 182 |
| DpnI | GATC | 1 cut(s) | 175 |
| DpnII | GATC | 1 cut(s) | 173 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| EagI | CGGCCG | 1 cut(s) | 108 |
| EclXI | CGGCCG | 1 cut(s) | 108 |
| Eco31I | GGTCTC | 1 cut(s) | 106 |
| Eco52I | CGGCCG | 1 cut(s) | 108 |
| FaiI | YATR | 1 cut(s) | 29 |
| FauI | CCCGC | 1 cut(s) | 94 |
| Fnu4HI | GCNGC | 4 cut(s) | 75, 111, 150, 153 |
| Fsp4HI | GCNGC | 4 cut(s) | 75, 111, 150, 153 |
| GluI | GCNGC | 4 cut(s) | 75, 111, 150, 153 |
| GsaI | CCCAGC | 1 cut(s) | 96 |
| HaeIII | GGCC | 3 cut(s) | 74, 110, 141 |
| HapII | CCGG | 3 cut(s) | 60, 98, 107 |
| HinfI | GANTC | 1 cut(s) | 80 |
| HpaII | CCGG | 3 cut(s) | 60, 98, 107 |
| HphI | GGTGA | 1 cut(s) | 96 |
| Hpy99I | CGWCG | 3 cut(s) | 130, 149, 161 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 29, 65, 74, 158 |
| HpyF3I | CTNAG | 2 cut(s) | 69, 182 |
| KroI | GCCGGC | 1 cut(s) | 59 |
| KroNI | GCCGGC | 1 cut(s) | 61 |
| Kzo9I | GATC | 1 cut(s) | 173 |
| LmnI | GCTCC | 1 cut(s) | 94 |
| LpnPI | CCDG | 7 cut(s) | 56, 73, 106, 111, 120, 123, 169 |
| MalI | GATC | 1 cut(s) | 175 |
| MbiI | CCGCTC | 1 cut(s) | 89 |
| MboI | GATC | 1 cut(s) | 173 |
| MboII | GAAGA | 1 cut(s) | 34 |
| MflI | RGATCY | 1 cut(s) | 173 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MnlI | CCTC | 2 cut(s) | 124, 152 |
| MreI | CGCCGGCG | 1 cut(s) | 59 |
| MroNI | GCCGGC | 1 cut(s) | 59 |
| MspI | CCGG | 3 cut(s) | 60, 98, 107 |
| MspR9I | CCNGG | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 29, 65, 74, 158 |
| NaeI | GCCGGC | 1 cut(s) | 61 |
| NciI | CCSGG | 1 cut(s) | 98 |
| NdeII | GATC | 1 cut(s) | 173 |
| NgoMIV | GCCGGC | 1 cut(s) | 59 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 153 |
| PdiI | GCCGGC | 1 cut(s) | 61 |
| PkrI | GCNGC | 4 cut(s) | 76, 112, 151, 154 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PspFI | CCCAGC | 1 cut(s) | 92 |
| PsuI | RGATCY | 1 cut(s) | 173 |
| SatI | GCNGC | 4 cut(s) | 75, 111, 150, 153 |
| Sau3AI | GATC | 1 cut(s) | 173 |
| SchI | GAGTC | 1 cut(s) | 74 |
| ScrFI | CCNGG | 1 cut(s) | 98 |
| SgrAI | CRCCGGYG | 1 cut(s) | 59 |
| SsiI | CCGC | 6 cut(s) | 75, 87, 111, 150, 153, 171 |
| StyD4I | CCNGG | 1 cut(s) | 96 |
| TaqI | TCGA | 1 cut(s) | 11 |
| TauI | GCSGC | 4 cut(s) | 77, 113, 152, 155 |