Rroxscaffold_3G00222400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016273
Physical Location & Seq
Forward (+)
5403205 .. 5403669
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222400.1

Sequence Viewer

Length: 465 bp
ATGATGAGATGCGGAGGGTGGTCCGAGAAGAAGCGGGATCCGGGCAAGATGGTTGGGTCTTCGACCTTGGGCCGGACGGACGGTTCTCGTTCGTCCCTCTCGGATCGGAGACGATGGTGGGTGTGGAGCGGCGACTCGATGGCCCTTTTCGGTGGTGGGATCGGAGCTACCATTCCGGCGATCCGTGATGCGGCGGACGAGATCAAAGCGAGGCCGGTCCGGTCGCGGTTTTGGATCCGGCCGCGGTCGTATGTGGGTTGTCGGATCCGTCCGCAACGTGGCCGGGCGGCGCGGTGGCGTAGGGTTGCGGCGACGTGGCATGGTGATCCGTGGCGGCGGAGTGGTGACATCGAAGCTCGCCGGCGGTGGGAAGGACGGTCTAGGGCGCTTGCTCTCTATTGGGGAAAAGGATGTTTGTGCTTGGGCTCTTCTTCTTGGGCCTCACCGGTTCTGTTTTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.52

Weight (kDa)

11.56

Isoelectric Point (pI)

84.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 3 cut(s) 226, 244, 292
AcoI YGGCCR 2 cut(s) 239, 280
AfiI CCNNNNNNNGG 4 cut(s) 72, 190, 278, 367
AgeI ACCGGT 1 cut(s) 445
AjiI CACGTC 1 cut(s) 315
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
AluBI AGCT 2 cut(s) 167, 356
AluI AGCT 2 cut(s) 167, 356
Alw26I GTCTC 1 cut(s) 103
AoxI GGCC 6 cut(s) 70, 141, 212, 239, 280, 438
AsiGI ACCGGT 1 cut(s) 445
AspLEI GCGC 2 cut(s) 292, 388
AspS9I GGNCC 5 cut(s) 21, 70, 142, 217, 438
AsuC2I CCSGG 2 cut(s) 42, 284
AsuHPI GGTGA 3 cut(s) 335, 356, 435
AvaII GGWCC 2 cut(s) 21, 217
BamHI GGATCC 3 cut(s) 37, 234, 264
BanII GRGCYC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 51
BccI CCATC 3 cut(s) 43, 108, 133
BcnI CCSGG 2 cut(s) 42, 284
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 389
BisI GCNGC 6 cut(s) 130, 192, 242, 288, 309, 335
BlsI GCNGC 6 cut(s) 131, 193, 243, 289, 310, 336
Bme1390I CCNGG 2 cut(s) 42, 284
Bme18I GGWCC 2 cut(s) 21, 217
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 5 cut(s) 21, 70, 142, 217, 438
BmiI GGNNCC 3 cut(s) 39, 236, 266
BmrFI CCNGG 2 cut(s) 42, 284
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 42, 284
BsaJI CCNNGG 3 cut(s) 66, 242, 329
BsaWI WCCGGW 2 cut(s) 219, 445
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 190, 278, 367
Bse118I RCCGGY 3 cut(s) 214, 360, 445
BseDI CCNNGG 3 cut(s) 66, 242, 329
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 4 cut(s) 72, 190, 278, 367
BseX3I CGGCCG 1 cut(s) 239
Bsh1236I CGCG 3 cut(s) 226, 244, 292
Bsh1285I CGRYCG 3 cut(s) 224, 242, 248
BshFI GGCC 6 cut(s) 72, 143, 214, 241, 282, 440
BshTI ACCGGT 1 cut(s) 445
BsiEI CGRYCG 3 cut(s) 224, 242, 248
BsiSI CCGG 9 cut(s) 41, 73, 176, 215, 220, 238, 283, 361, 446
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 4 cut(s) 72, 190, 278, 367
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 6 cut(s) 72, 143, 214, 241, 282, 440
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 8 cut(s) 37, 103, 159, 180, 201, 234, 264, 325
BspANI GGCC 6 cut(s) 72, 143, 214, 241, 282, 440
BspFNI CGCG 3 cut(s) 226, 244, 292
BspLI GGNNCC 3 cut(s) 39, 236, 266
BspQI GCTCTTC 1 cut(s) 433
BsrBI CCGCTC 1 cut(s) 129
BsrFI RCCGGY 3 cut(s) 214, 360, 445
BssAI RCCGGY 3 cut(s) 214, 360, 445
BssECI CCNNGG 3 cut(s) 66, 242, 329
BssMI GATC 8 cut(s) 37, 103, 159, 180, 201, 234, 264, 325
BssT1I CCWWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 83, 378
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 358, 362, 390
BstDSI CCRYGG 2 cut(s) 242, 329
BstF5I GGATG 1 cut(s) 416
BstFNI CGCG 3 cut(s) 226, 244, 292
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 2 cut(s) 292, 388
BstKTI GATC 8 cut(s) 40, 106, 162, 183, 204, 237, 267, 328
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 8 cut(s) 37, 103, 159, 180, 201, 234, 264, 325
BstMCI CGRYCG 3 cut(s) 224, 242, 248
BstSCI CCNGG 2 cut(s) 40, 282
BstUI CGCG 3 cut(s) 226, 244, 292
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 3 cut(s) 37, 234, 264
BstYI RGATCY 3 cut(s) 37, 234, 264
BstZI CGGCCG 1 cut(s) 239
BsuRI GGCC 6 cut(s) 72, 143, 214, 241, 282, 440
BtgI CCRYGG 2 cut(s) 242, 329
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 416
Cac8I GCNNGC 3 cut(s) 358, 362, 390
CfoI GCGC 2 cut(s) 292, 388
Cfr10I RCCGGY 3 cut(s) 214, 360, 445
Cfr13I GGNCC 5 cut(s) 21, 70, 142, 217, 438
Cfr42I CCGCGG 1 cut(s) 245
CpoI CGGWCCG 1 cut(s) 217
CspAI ACCGGT 1 cut(s) 445
CspI CGGWCCG 1 cut(s) 217
CviAII CATG 1 cut(s) 320
CviJI RGCY 9 cut(s) 72, 143, 167, 214, 241, 282, 356, 426, 440
CviKI_1 RGCY 9 cut(s) 72, 143, 167, 214, 241, 282, 356, 426, 440
DpnI GATC 8 cut(s) 39, 105, 161, 182, 203, 236, 266, 327
DpnII GATC 8 cut(s) 37, 103, 159, 180, 201, 234, 264, 325
EaeI YGGCCR 2 cut(s) 239, 280
EagI CGGCCG 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
EciI GGCGGA 2 cut(s) 209, 352
EclXI CGGCCG 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 428
Eco47I GGWCC 2 cut(s) 21, 217
Eco52I CGGCCG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 1 cut(s) 323
FaiI YATR 2 cut(s) 252, 321
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 319
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 6 cut(s) 130, 192, 242, 288, 309, 335
FokI GGATG 1 cut(s) 423
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 6 cut(s) 130, 192, 242, 288, 309, 335
FspBI CTAG 1 cut(s) 381
GlaI GCGC 2 cut(s) 291, 387
GluI GCNGC 6 cut(s) 130, 192, 242, 288, 309, 335
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 6 cut(s) 72, 143, 214, 241, 282, 440
HapII CCGG 9 cut(s) 41, 73, 176, 215, 220, 238, 283, 361, 446
HhaI GCGC 2 cut(s) 292, 388
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 2 cut(s) 290, 386
HinP1I GCGC 2 cut(s) 290, 386
HinfI GANTC 1 cut(s) 134
HpaII CCGG 9 cut(s) 41, 73, 176, 215, 220, 238, 283, 361, 446
HphI GGTGA 3 cut(s) 335, 356, 435
Hpy188I TCNGA 5 cut(s) 25, 103, 108, 164, 264
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 2 cut(s) 83, 378
HpyCH4IV ACGT 2 cut(s) 277, 314
HpySE526I ACGT 2 cut(s) 277, 314
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 2 cut(s) 290, 386
KroI GCCGGC 1 cut(s) 360
KroNI GCCGGC 1 cut(s) 362
KspI CCGCGG 1 cut(s) 245
Kzo9I GATC 8 cut(s) 37, 103, 159, 180, 201, 234, 264, 325
LguI GCTCTTC 1 cut(s) 433
LmnI GCTCC 2 cut(s) 126, 164
LpnPI CCDG 9 cut(s) 54, 86, 189, 228, 233, 251, 296, 374, 459
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 381
MaeII ACGT 2 cut(s) 277, 314
MaeIII GTNAC 1 cut(s) 344
MalI GATC 8 cut(s) 39, 105, 161, 182, 203, 236, 266, 327
MbiI CCGCTC 1 cut(s) 129
MboI GATC 8 cut(s) 37, 103, 159, 180, 201, 234, 264, 325
MboII GAAGA 4 cut(s) 40, 51, 420, 423
MflI RGATCY 3 cut(s) 37, 234, 264
MhlI GDGCHC 1 cut(s) 428
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 4 cut(s) 8, 107, 204, 451
MreI CGCCGGCG 1 cut(s) 360
MroNI GCCGGC 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 9 cut(s) 41, 73, 176, 215, 220, 238, 283, 361, 446
MspR9I CCNGG 2 cut(s) 42, 284
MvnI CGCG 3 cut(s) 226, 244, 292
NaeI GCCGGC 1 cut(s) 362
NciI CCSGG 2 cut(s) 42, 284
NdeII GATC 8 cut(s) 37, 103, 159, 180, 201, 234, 264, 325
NgoMIV GCCGGC 1 cut(s) 360
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 3 cut(s) 39, 236, 266
NmuCI GTSAC 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 433
PdiI GCCGGC 1 cut(s) 362
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 6 cut(s) 131, 193, 243, 289, 310, 336
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspN4I GGNNCC 3 cut(s) 39, 236, 266
PspPI GGNCC 5 cut(s) 21, 70, 142, 217, 438
PsuI RGATCY 3 cut(s) 37, 234, 264
Rsr2I CGGWCCG 1 cut(s) 217
RsrII CGGWCCG 1 cut(s) 217
SacII CCGCGG 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 433
SatI GCNGC 6 cut(s) 130, 192, 242, 288, 309, 335
Sau3AI GATC 8 cut(s) 37, 103, 159, 180, 201, 234, 264, 325
Sau96I GGNCC 5 cut(s) 21, 70, 142, 217, 438
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 42, 284
SduI GDGCHC 1 cut(s) 428
SetI ASST 5 cut(s) 68, 169, 280, 317, 358
SfaNI GCATC 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 245
SgrAI CRCCGGYG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 245
SinI GGWCC 2 cut(s) 21, 217
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 40, 282
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 2 cut(s) 83, 378
TaiI ACGT 2 cut(s) 280, 317
TaqI TCGA 3 cut(s) 62, 137, 351
TauI GCSGC 6 cut(s) 132, 194, 244, 290, 311, 337
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspGWI ACGGA 4 cut(s) 92, 173, 257, 318
VpaK11BI GGWCC 2 cut(s) 21, 217
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.