Rorug06G0380500

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
52646782 .. 52647048
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0380500.1

Sequence Viewer

Length: 267 bp
ATGGGGGTGAAGTTGCAGAACAACAATGGAGGAGACCAAACTGTCTGGGCCGAGACAGAGCCACATCTGGCGGCCAAGCCCAAGTCTATGCCGAAGAAGGAGGGCAGTGTGTTTCCGGCGAAGAGGAGGTTGGTGAAGACCATGGCTTTCACTTCCATTCTCCACTTCTTTGTCTTTCGTTGCTCTTCTGCTGGAGGAGGAACCGCCACACCCAAATCCCCAAATGGCAAGAAATCCAAGCAGATAGTCCCAGACCCTAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.49

Weight (kDa)

10.3

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AciI CCGC 2 cut(s) 71, 204
AcoI YGGCCR 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
Alw26I GTCTC 2 cut(s) 27, 47
AoxI GGCC 2 cut(s) 48, 72
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 19, 145
BbsI GAAGAC 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 27, 47
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 141
BseRI GAGGAG 3 cut(s) 45, 139, 210
BshFI GGCC 2 cut(s) 50, 74
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 27, 47
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 2 cut(s) 50, 74
Bso31I GGTCTC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 2 cut(s) 71, 204
BspANI GGCC 2 cut(s) 50, 74
BspLI GGNNCC 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 116, 190
BstDSI CCRYGG 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 27, 47
BstV2I GAAGAC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 50, 74
BtgI CCRYGG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 2 cut(s) 142, 264
CviJI RGCY 5 cut(s) 50, 61, 74, 79, 146
CviKI_1 RGCY 5 cut(s) 50, 61, 74, 79, 146
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 116, 190
EarI CTCTTC 2 cut(s) 116, 190
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 145, 267
FaiI YATR 3 cut(s) 89, 143, 265
FaqI GGGAC 1 cut(s) 233
FatI CATG 2 cut(s) 141, 263
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 2 cut(s) 50, 74
HapII CCGG 1 cut(s) 116
Hin1II CATG 2 cut(s) 145, 267
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 19, 145
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 16
Hsp92II CATG 2 cut(s) 145, 267
LguI GCTCTTC 1 cut(s) 190
LpnPI CCDG 4 cut(s) 31, 53, 129, 177
MboII GAAGA 4 cut(s) 106, 133, 148, 177
MnlI CCTC 6 cut(s) 23, 94, 117, 120, 188, 191
MspI CCGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 141
NlaIII CATG 2 cut(s) 145, 267
NlaIV GGNNCC 1 cut(s) 202
NmeAIII GCCGAG 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 190
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 48
SetI ASST 1 cut(s) 131
SsiI CCGC 2 cut(s) 71, 204
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 43
TauI GCSGC 1 cut(s) 74
TscAI CASTG 1 cut(s) 112
TspRI CASTG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.