Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016273

Physical Location & Seq

Genomic Coordinates Reverse (-)

2006063 .. 2006563

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010481

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTAAGGCACGTCCTTAAAACGGCGTCGTCGAGTAGTAAATCATTCGCTTCACGCGAGATTTGTTTCGGGTCCGGTGGTCCCCCACCGGAAAACTCTACCACAGCTGTGAGCTGTCAACGAACCAATAGCCAGCCTATTCACAACAACCACAAAGCTCTTCACACTTCTTCAAAGACAATGGCCGGCTCAAAAGTGATGGCTCTTATGGCTGTGTTCGTCGTCGTCATCTCTCTCGCCGGCGTTGCTCAGGCCGCCGACTCTCCCGCTCCCAGCCCTGTCTCACCGGCCGCCTCAATCTCGCCATCGTTTGTTTCTGGCCTCGTCGCCGCCGCCGTCGCTCTTGTCTTCGGATCTGCTCTCAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

12.41

Weight (kDa)

10.2

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32230
rosa_chinensis	RchiOBHm_Chr6g0310451 RchiOBHm_Chr6g0310461
rosa_laevigata	RLG00000010481
rosa_multiflora	Rmu_sc0006629.1_g000002 Rmu_sc0020729.1_g000013
rosa_roxburghii	Rroxscaffold_3G00222400 Rroxscaffold_7G00158500 Rroxscaffold_7G00158510
rosa_rugosa	Rorug06G0380500
rosa_samantha	Rh6AG494400 Rh6AG494500 Rh6BG504200 Rh6CG509400 Rh6DG495400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	269
AccII	CGCG	1 cut(s)	57
AciI	CCGC	5 cut(s)	255, 267, 291, 330, 333
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	2 cut(s)	183, 288
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	13
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	3 cut(s)	107, 114, 158
AluI	AGCT	3 cut(s)	107, 114, 158
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	361
AoxI	GGCC	4 cut(s)	183, 252, 288, 319
AspS9I	GGNCC	2 cut(s)	72, 80
AsuHPI	GGTGA	1 cut(s)	276
AvaII	GGWCC	2 cut(s)	72, 80
BbsI	GAAGAC	1 cut(s)	340
BccI	CCATC	2 cut(s)	193, 313
BceAI	ACGGC	2 cut(s)	39, 320
BcoDI	GTCTC	1 cut(s)	286
BisI	GCNGC	4 cut(s)	255, 291, 330, 333
BlsI	GCNGC	4 cut(s)	256, 292, 331, 334
Bme18I	GGWCC	2 cut(s)	72, 80
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	72, 80
BmiI	GGNNCC	2 cut(s)	73, 82
BpiI	GAAGAC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	26
BsaWI	WCCGGW	2 cut(s)	74, 88
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	3 cut(s)	185, 239, 286
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	185, 254, 290, 321
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	5 cut(s)	75, 89, 186, 240, 287
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	185, 254, 290, 321
Bsp143I	GATC	1 cut(s)	353
BspACI	CCGC	5 cut(s)	255, 267, 291, 330, 333
BspANI	GGCC	4 cut(s)	185, 254, 290, 321
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	73, 82
BspPI	GGATC	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	165
BsrBI	CCGCTC	1 cut(s)	269
BsrFI	RCCGGY	3 cut(s)	185, 239, 286
BssAI	RCCGGY	3 cut(s)	185, 239, 286
BssMI	GATC	1 cut(s)	353
BssNI	GRCGYC	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	134, 187, 241
BstDEI	CTNAG	2 cut(s)	249, 362
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	353
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 245, 254, 338
BstUI	CGCG	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BstZI	CGGCCG	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	185, 254, 290, 321
BtrI	CACGTC	1 cut(s)	13
Cac8I	GCNNGC	3 cut(s)	134, 187, 241
Cfr10I	RCCGGY	3 cut(s)	185, 239, 286
Cfr13I	GGNCC	2 cut(s)	72, 80
CseI	GACGC	1 cut(s)	15
DdeI	CTNAG	2 cut(s)	249, 362
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
EaeI	YGGCCR	2 cut(s)	183, 288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	72, 80
Eco52I	CGGCCG	1 cut(s)	288
FaiI	YATR	1 cut(s)	209
FaqI	GGGAC	1 cut(s)	66
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	255, 291, 330, 333
Fsp4HI	GCNGC	4 cut(s)	255, 291, 330, 333
GluI	GCNGC	4 cut(s)	255, 291, 330, 333
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	4 cut(s)	185, 254, 290, 321
HapII	CCGG	5 cut(s)	75, 89, 186, 240, 287
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	5 cut(s)	75, 89, 186, 240, 287
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	6 cut(s)	31, 34, 224, 227, 329, 341
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 245, 254, 338
HpyF3I	CTNAG	2 cut(s)	249, 362
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	26
KroI	GCCGGC	2 cut(s)	185, 239
KroNI	GCCGGC	2 cut(s)	187, 241
Kzo9I	GATC	1 cut(s)	353
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	12
MalI	GATC	1 cut(s)	355
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	1 cut(s)	353
MboII	GAAGA	3 cut(s)	152, 162, 340
MflI	RGATCY	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	2 cut(s)	304, 332
MreI	CGCCGGCG	1 cut(s)	239
MroNI	GCCGGC	2 cut(s)	185, 239
MseI	TTAA	2 cut(s)	5, 18
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	5 cut(s)	75, 89, 186, 240, 287
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	209, 245, 254, 338
NaeI	GCCGGC	2 cut(s)	187, 241
NdeII	GATC	1 cut(s)	353
NgoMIV	GCCGGC	2 cut(s)	185, 239
NlaIV	GGNNCC	2 cut(s)	73, 82
OliI	CACNNNNGTG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 54, 333
PdiI	GCCGGC	2 cut(s)	187, 241
PkrI	GCNGC	4 cut(s)	256, 292, 331, 334
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	73, 82
PspPI	GGNCC	2 cut(s)	72, 80
PsuI	RGATCY	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	5, 18
SatI	GCNGC	4 cut(s)	255, 291, 330, 333
Sau3AI	GATC	1 cut(s)	353
Sau96I	GGNCC	2 cut(s)	72, 80
SchI	GAGTC	1 cut(s)	254
SetI	ASST	4 cut(s)	15, 109, 116, 160
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	2 cut(s)	72, 80
SmiMI	CAYNNNNRTG	1 cut(s)	107
SsiI	CCGC	5 cut(s)	255, 267, 291, 330, 333
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	32
TauI	GCSGC	4 cut(s)	257, 293, 332, 335
Tru1I	TTAA	2 cut(s)	5, 18
Tru9I	TTAA	2 cut(s)	5, 18
VpaK11BI	GGWCC	2 cut(s)	72, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.