Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016273

Physical Location & Seq

Genomic Coordinates Forward (+)

67069146 .. 67083945

Gene Structure 14800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG494400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCAGGCTCAAAAGTGATGGCTCTTATGGCTGTGTTCGTCGTCGTCATCTCTCTCGCCGGCGTTGCTCAGGCAGCCGATGCTCCCGCTCCCAGCCCGGTCTCACCGGCCGCCTCCATCTCGCCGTCGTTTGCTTCTGGCCTCGTCGCCGCCGCCGTCGCTCTTGTCTTCGGATCTGCTCTCAGGTTCATAAACCCTGGTCAGCTTGTAGAAGCGAGCAGCTGCCCCTACGTGCTGTCCCAACCCCAACCAACTCGAGCTCGCTATAAATATCATTATAATGGTCACTTCACAATATCATCTGTGAATCTCAGTCTGCCTCTGCAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.26

Weight (kDa)

9.43

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32230
rosa_chinensis	RchiOBHm_Chr6g0310451 RchiOBHm_Chr6g0310461
rosa_laevigata	RLG00000010481
rosa_multiflora	Rmu_sc0006629.1_g000002 Rmu_sc0020729.1_g000013
rosa_roxburghii	Rroxscaffold_3G00222400 Rroxscaffold_7G00158500 Rroxscaffold_7G00158510
rosa_rugosa	Rorug06G0380500
rosa_samantha	Rh6AG494400 Rh6AG494500 Rh6BG504200 Rh6CG509400 Rh6DG495400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AccBSI	CCGCTC	1 cut(s)	89
AciI	CCGC	4 cut(s)	87, 111, 150, 153
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	3 cut(s)	205, 222, 260
AluI	AGCT	3 cut(s)	205, 222, 260
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	108, 139
ApeKI	GCWGC	3 cut(s)	74, 219, 222
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	86, 209, 231
BccI	CCATC	2 cut(s)	13, 125
BceAI	ACGGC	2 cut(s)	109, 140
BciT130I	CCWGG	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	323
BisI	GCNGC	6 cut(s)	75, 111, 150, 153, 220, 223
BlsI	GCNGC	6 cut(s)	76, 112, 151, 154, 221, 224
Bme1390I	CCNGG	2 cut(s)	98, 198
BmeT110I	CYCGRG	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	98, 198
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	196
Bse118I	RCCGGY	2 cut(s)	59, 106
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	196
BseMII	CTCAG	3 cut(s)	83, 196, 325
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	3 cut(s)	86, 209, 231
BseYI	CCCAGC	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	110, 141
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	60, 98, 107
BslFI	GGGAC	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	110, 141
Bso31I	GGTCTC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	4 cut(s)	87, 111, 150, 153
BspANI	GGCC	2 cut(s)	110, 141
BspCNI	CTCAG	3 cut(s)	82, 195, 324
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	89
BsrFI	RCCGGY	2 cut(s)	59, 106
BssAI	RCCGGY	2 cut(s)	59, 106
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	7, 61, 217, 262
BstDEI	CTNAG	3 cut(s)	69, 182, 311
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	173
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 65, 74, 80, 158
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	2 cut(s)	96, 196
BstSFI	CTRYAG	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	86, 209, 231
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	110, 141
Cac8I	GCNNGC	4 cut(s)	7, 61, 217, 262
Cfr10I	RCCGGY	2 cut(s)	59, 106
DdeI	CTNAG	3 cut(s)	69, 182, 311
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	108
EagI	CGGCCG	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	260
EclXI	CGGCCG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	262
FaiI	YATR	5 cut(s)	29, 191, 267, 279, 331
FaqI	GGGAC	1 cut(s)	223
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	6 cut(s)	75, 111, 150, 153, 220, 223
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	6 cut(s)	75, 111, 150, 153, 220, 223
GluI	GCNGC	6 cut(s)	75, 111, 150, 153, 220, 223
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	110, 141
HapII	CCGG	3 cut(s)	60, 98, 107
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	3 cut(s)	60, 98, 107
HphI	GGTGA	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	173
Hpy99I	CGWCG	5 cut(s)	44, 47, 130, 149, 161
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 65, 74, 80, 158
HpyF3I	CTNAG	3 cut(s)	69, 182, 311
HpySE526I	ACGT	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	88, 94
LpnPI	CCDG	9 cut(s)	56, 73, 106, 111, 120, 123, 169, 183, 210
Lsp1109I	GCAGC	3 cut(s)	86, 209, 231
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	175
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	1 cut(s)	173
MboII	GAAGA	1 cut(s)	160
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	262
MnlI	CCTC	3 cut(s)	124, 152, 330
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	3 cut(s)	60, 98, 107
MspR9I	CCNGG	2 cut(s)	98, 198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	5 cut(s)	29, 65, 74, 80, 158
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	173
NgoMIV	GCCGGC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	6 cut(s)	76, 112, 151, 154, 221, 224
Ppu21I	YACGTR	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	196
PspXI	VCTCGAGB	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	262
SatI	GCNGC	6 cut(s)	75, 111, 150, 153, 220, 223
Sau3AI	GATC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	98, 198
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	5 cut(s)	188, 207, 224, 234, 262
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	323
Sfr274I	CTCGAG	1 cut(s)	255
SgrAI	CRCCGGYG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SsiI	CCGC	4 cut(s)	87, 111, 150, 153
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	96, 196
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	256
TauI	GCSGC	3 cut(s)	113, 152, 155
TfiI	GAWTC	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	74, 219, 222
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.