RchiOBHm_Chr6g0310461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016273
Physical Location & Seq
Forward (+)
67807956 .. 67808759
804 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27919

Sequence Viewer

Length: 222 bp
ATGGCAGGCACAAAAGCTCCAGTGGTGGCTCTCGTGGCAGTGCTTTTCATGGTCGTCTCTCTCGCCGGCGTTGCACAGGCCCATGAAGGTCATGATCATGCTTCTGCTCCTGCTATTCCTCCAAGCACGACCTCCCCGGCCGCCTTCATCTCTTCGTCGTTCGTTTCTGCTTTCATCGTCGCCGCAGCGGCTCTCGTCTTCGGGTCTGCTCTCATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.14

Weight (kDa)

6.21

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 141, 183, 188
AcoI YGGCCR 1 cut(s) 138
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 2 cut(s) 78, 138
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 137
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 197
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 61
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 4 cut(s) 141, 183, 186, 189
BlsI GCNGC 4 cut(s) 142, 184, 187, 190
Bme1390I CCNGG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 190
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 20
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 80, 140
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 2 cut(s) 66, 137
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsnI GGCC 2 cut(s) 80, 140
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 3 cut(s) 141, 183, 188
BspANI GGCC 2 cut(s) 80, 140
BspHI TCATGA 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 94
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 7, 67
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 94
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 35, 71, 188
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 138
BsuRI GGCC 2 cut(s) 80, 140
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 27, 45
Cac8I GCNNGC 2 cut(s) 7, 67
CciI TCATGA 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 79
CviAII CATG 5 cut(s) 49, 83, 92, 98, 214
CviJI RGCY 5 cut(s) 17, 29, 80, 140, 191
CviKI_1 RGCY 5 cut(s) 17, 29, 80, 140, 191
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 138
Eco52I CGGCCG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 5 cut(s) 52, 86, 95, 101, 217
FaiI YATR 5 cut(s) 50, 84, 93, 99, 215
FatI CATG 5 cut(s) 48, 82, 91, 97, 213
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 141, 183, 186, 189
Fsp4HI GCNGC 4 cut(s) 141, 183, 186, 189
GluI GCNGC 4 cut(s) 141, 183, 186, 189
HaeIII GGCC 2 cut(s) 80, 140
HapII CCGG 2 cut(s) 66, 137
Hin1II CATG 5 cut(s) 52, 86, 95, 101, 217
HpaII CCGG 2 cut(s) 66, 137
Hpy188III TCNNGA 1 cut(s) 92
Hpy99I CGWCG 2 cut(s) 160, 182
HpyAV CCTTC 2 cut(s) 80, 154
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 71, 188
Hsp92II CATG 5 cut(s) 52, 86, 95, 101, 217
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 22, 112
LpnPI CCDG 5 cut(s) 33, 62, 79, 123, 150
Lsp1109I GCAGC 1 cut(s) 197
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 144, 190
MnlI CCTC 2 cut(s) 129, 142
MreI CGCCGGCG 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 2 cut(s) 66, 137
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 35, 71, 188
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 137
NdeII GATC 1 cut(s) 94
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 5 cut(s) 52, 86, 95, 101, 217
PagI TCATGA 1 cut(s) 91
PdiI GCCGGC 1 cut(s) 67
PkrI GCNGC 4 cut(s) 142, 184, 187, 190
PspPI GGNCC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 96
SatI GCNGC 4 cut(s) 141, 183, 186, 189
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 137
SetI ASST 3 cut(s) 19, 91, 134
SgrAI CRCCGGYG 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 96
SsiI CCGC 3 cut(s) 141, 183, 188
StyD4I CCNGG 1 cut(s) 135
TauI GCSGC 3 cut(s) 143, 185, 191
TscAI CASTG 2 cut(s) 27, 45
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 4 cut(s) 37, 99, 136, 163
TspRI CASTG 2 cut(s) 27, 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.