Rh6CG509400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016273
Physical Location & Seq
Forward (+)
66965144 .. 66968659
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG509400.1

Sequence Viewer

Length: 477 bp
ATGGCCGGCTCAAATGTGATGGCTCTTATGGCTGTGTTCGTCGTCGTCATCTCTATCGCCGGCGTTGCTCAGGCCGCCGACGCTCCCGCTCCCAGCCCGGTCTCACCGGCCGCCTCCATCTCGCCGTCGTTTGTTTCTGGCCTCGTCGCCGCCGCCGTCGCTCTTGTCTTCGGATCTGCTCTCAGGTCTGCCTCTGCAGTCATAAACCTTAGATTCACAGAACTAAAAAGCTTCTCATTATCAACAAAGACAATGGCAGGCACAAAAGCTCATCCAGTGGTGGCTCTCGTGGCAGTGCTCATCATGGTCATCTCTCTCGCCGGCGTTGCACAGGCCCATGAAGGTCATGATCATGCTTCTGCTCCTGCGATTCCTCCAAGCACGACCTCCCCGGCCGCCTTCATCTCTCCGTCGTTCGTTTCTGCTTTCATCGCCGCCGCAGCGGCTCTCGTCTTCGGATCTGCTCTCATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

15.46

Weight (kDa)

8.33

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 9 cut(s) 75, 87, 111, 150, 153, 396, 435, 438, 443
AclWI GGATC 2 cut(s) 181, 466
AcoI YGGCCR 3 cut(s) 3, 108, 393
AluBI AGCT 2 cut(s) 231, 269
AluI AGCT 2 cut(s) 231, 269
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 181, 466
AoxI GGCC 6 cut(s) 3, 72, 108, 139, 333, 393
ApeKI GCWGC 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 334
AsuC2I CCSGG 2 cut(s) 98, 392
AsuHPI GGTGA 1 cut(s) 96
BauI CACGAG 1 cut(s) 287
BbsI GAAGAC 2 cut(s) 160, 445
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 452
BccI CCATC 2 cut(s) 13, 125
BceAI ACGGC 2 cut(s) 109, 140
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 2 cut(s) 98, 392
BcoDI GTCTC 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 9 cut(s) 75, 111, 150, 153, 396, 435, 438, 441, 444
BlsI GCNGC 9 cut(s) 76, 112, 151, 154, 397, 436, 439, 442, 445
Bme1390I CCNGG 2 cut(s) 98, 392
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 98, 392
BpiI GAAGAC 2 cut(s) 160, 445
Bpu10I CCTNAGC 1 cut(s) 69
BpuMI CCSGG 2 cut(s) 98, 392
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 390
Bse118I RCCGGY 4 cut(s) 5, 59, 106, 320
Bse1I ACTGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 83, 196
BseNI ACTGG 1 cut(s) 275
BseX3I CGGCCG 2 cut(s) 108, 393
BseXI GCAGC 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 92
Bsh1285I CGRYCG 2 cut(s) 111, 396
BshFI GGCC 6 cut(s) 5, 74, 110, 141, 335, 395
BsiEI CGRYCG 2 cut(s) 111, 396
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 6 cut(s) 6, 60, 98, 107, 321, 392
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 6 cut(s) 5, 74, 110, 141, 335, 395
Bso31I GGTCTC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 3 cut(s) 173, 349, 458
BspACI CCGC 9 cut(s) 75, 87, 111, 150, 153, 396, 435, 438, 443
BspANI GGCC 6 cut(s) 5, 74, 110, 141, 335, 395
BspCNI CTCAG 2 cut(s) 82, 195
BspHI TCATGA 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 181, 466
BspTNI GGTCTC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 89
BsrFI RCCGGY 4 cut(s) 5, 59, 106, 320
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 4 cut(s) 5, 59, 106, 320
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 3 cut(s) 173, 349, 458
BssSI CACGAG 1 cut(s) 287
Bst2BI CACGAG 1 cut(s) 287
BstC8I GCNNGC 4 cut(s) 7, 61, 259, 322
BstDEI CTNAG 3 cut(s) 69, 182, 209
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 176, 352, 461
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 173, 349, 458
BstMCI CGRYCG 2 cut(s) 111, 396
BstSCI CCNGG 2 cut(s) 96, 390
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 2 cut(s) 160, 445
BstX2I RGATCY 2 cut(s) 173, 458
BstYI RGATCY 2 cut(s) 173, 458
BstZI CGGCCG 2 cut(s) 108, 393
BsuRI GGCC 6 cut(s) 5, 74, 110, 141, 335, 395
BtgZI GCGATG 1 cut(s) 415
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 282, 300
Cac8I GCNNGC 4 cut(s) 7, 61, 259, 322
CciI TCATGA 1 cut(s) 346
Cfr10I RCCGGY 4 cut(s) 5, 59, 106, 320
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 1 cut(s) 89
CviAII CATG 4 cut(s) 304, 338, 347, 353
DdeI CTNAG 3 cut(s) 69, 182, 209
DpnI GATC 3 cut(s) 175, 351, 460
DpnII GATC 3 cut(s) 173, 349, 458
EaeI YGGCCR 3 cut(s) 3, 108, 393
EagI CGGCCG 2 cut(s) 108, 393
EclXI CGGCCG 2 cut(s) 108, 393
Eco31I GGTCTC 1 cut(s) 106
Eco52I CGGCCG 2 cut(s) 108, 393
FaeI CATG 4 cut(s) 307, 341, 350, 356
FaiI YATR 6 cut(s) 29, 203, 305, 339, 348, 354
FatI CATG 4 cut(s) 303, 337, 346, 352
FauI CCCGC 1 cut(s) 94
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 9 cut(s) 75, 111, 150, 153, 396, 435, 438, 441, 444
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 9 cut(s) 75, 111, 150, 153, 396, 435, 438, 441, 444
GluI GCNGC 9 cut(s) 75, 111, 150, 153, 396, 435, 438, 441, 444
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 6 cut(s) 5, 74, 110, 141, 335, 395
HapII CCGG 6 cut(s) 6, 60, 98, 107, 321, 392
HgaI GACGC 1 cut(s) 89
Hin1II CATG 4 cut(s) 307, 341, 350, 356
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 2 cut(s) 213, 370
HpaII CCGG 6 cut(s) 6, 60, 98, 107, 321, 392
HphI GGTGA 1 cut(s) 96
Hpy188I TCNGA 2 cut(s) 173, 458
Hpy188III TCNNGA 1 cut(s) 347
Hpy99I CGWCG 7 cut(s) 44, 47, 83, 130, 149, 161, 415
HpyAV CCTTC 2 cut(s) 335, 409
HpyCH4V TGCA 2 cut(s) 197, 329
HpyF3I CTNAG 3 cut(s) 69, 182, 209
Hsp92II CATG 4 cut(s) 307, 341, 350, 356
KroI GCCGGC 3 cut(s) 5, 59, 320
KroNI GCCGGC 3 cut(s) 7, 61, 322
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 3 cut(s) 173, 349, 458
LmnI GCTCC 3 cut(s) 88, 94, 367
Lsp1109I GCAGC 1 cut(s) 452
MalI GATC 3 cut(s) 175, 351, 460
MbiI CCGCTC 1 cut(s) 89
MboI GATC 3 cut(s) 173, 349, 458
MboII GAAGA 2 cut(s) 160, 445
MflI RGATCY 2 cut(s) 173, 458
MhlI GDGCHC 1 cut(s) 300
MnlI CCTC 5 cut(s) 124, 152, 202, 384, 397
MreI CGCCGGCG 2 cut(s) 59, 320
MroNI GCCGGC 3 cut(s) 5, 59, 320
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 6 cut(s) 6, 60, 98, 107, 321, 392
MspR9I CCNGG 2 cut(s) 98, 392
NaeI GCCGGC 3 cut(s) 7, 61, 322
NciI CCSGG 2 cut(s) 98, 392
NdeII GATC 3 cut(s) 173, 349, 458
NgoMIV GCCGGC 3 cut(s) 5, 59, 320
NlaIII CATG 4 cut(s) 307, 341, 350, 356
PagI TCATGA 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdiI GCCGGC 3 cut(s) 7, 61, 322
PfeI GAWTC 2 cut(s) 213, 370
PkrI GCNGC 9 cut(s) 76, 112, 151, 154, 397, 436, 439, 442, 445
PspFI CCCAGC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 334
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 2 cut(s) 173, 458
RseI CAYNNNNRTG 1 cut(s) 351
SatI GCNGC 9 cut(s) 75, 111, 150, 153, 396, 435, 438, 441, 444
Sau3AI GATC 3 cut(s) 173, 349, 458
Sau96I GGNCC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 98, 392
SduI GDGCHC 1 cut(s) 300
SetI ASST 6 cut(s) 188, 210, 233, 271, 346, 389
SfcI CTRYAG 1 cut(s) 195
SgrAI CRCCGGYG 2 cut(s) 59, 320
SmiMI CAYNNNNRTG 1 cut(s) 351
SsiI CCGC 9 cut(s) 75, 87, 111, 150, 153, 396, 435, 438, 443
StyD4I CCNGG 2 cut(s) 96, 390
TauI GCSGC 8 cut(s) 77, 113, 152, 155, 398, 437, 440, 446
TfiI GAWTC 2 cut(s) 213, 370
TscAI CASTG 2 cut(s) 282, 300
TseI GCWGC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 354, 391, 418
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 2 cut(s) 282, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.