Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016273

Physical Location & Seq

Genomic Coordinates Forward (+)

67083993 .. 67084214

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG494500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCAGGCACAAAAGCTCCAGTGGTGGCTCTCGTGGCAGTGCTTTTCATGGTCGTCTCTCTCGCCGGCGTTGCACAGGCCCATGAAGGTCATGATCATGCTTCTGCTCCTGCTATTCCTCCAAGCACGACCTCCCCGGCCGCCTTCATCTCTTCGTCGTTCGTTTCTGCTTTCATCGTCGCCGCAGCGGCTCTCGTCTTCGGGTCTGCTCTCATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

7.14

Weight (kDa)

6.21

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32230
rosa_chinensis	RchiOBHm_Chr6g0310451 RchiOBHm_Chr6g0310461
rosa_laevigata	RLG00000010481
rosa_multiflora	Rmu_sc0006629.1_g000002 Rmu_sc0020729.1_g000013
rosa_roxburghii	Rroxscaffold_3G00222400 Rroxscaffold_7G00158500 Rroxscaffold_7G00158510
rosa_rugosa	Rorug06G0380500
rosa_samantha	Rh6AG494400 Rh6AG494500 Rh6BG504200 Rh6CG509400 Rh6DG495400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	141, 183, 188
AcoI	YGGCCR	1 cut(s)	138
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	2 cut(s)	78, 138
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	137
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	197
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	188
BisI	GCNGC	4 cut(s)	141, 183, 186, 189
BlsI	GCNGC	4 cut(s)	142, 184, 187, 190
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	80, 140
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	66, 137
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	80, 140
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	3 cut(s)	141, 183, 188
BspANI	GGCC	2 cut(s)	80, 140
BspHI	TCATGA	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	94
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	7, 67
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	94
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 71, 188
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	80, 140
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	27, 45
Cac8I	GCNNGC	2 cut(s)	7, 67
CciI	TCATGA	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	5 cut(s)	49, 83, 92, 98, 214
CviJI	RGCY	5 cut(s)	17, 29, 80, 140, 191
CviKI_1	RGCY	5 cut(s)	17, 29, 80, 140, 191
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	138
Eco52I	CGGCCG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	5 cut(s)	52, 86, 95, 101, 217
FaiI	YATR	5 cut(s)	50, 84, 93, 99, 215
FatI	CATG	5 cut(s)	48, 82, 91, 97, 213
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	141, 183, 186, 189
Fsp4HI	GCNGC	4 cut(s)	141, 183, 186, 189
GluI	GCNGC	4 cut(s)	141, 183, 186, 189
HaeIII	GGCC	2 cut(s)	80, 140
HapII	CCGG	2 cut(s)	66, 137
Hin1II	CATG	5 cut(s)	52, 86, 95, 101, 217
HpaII	CCGG	2 cut(s)	66, 137
Hpy188III	TCNNGA	1 cut(s)	92
Hpy99I	CGWCG	2 cut(s)	160, 182
HpyAV	CCTTC	2 cut(s)	80, 154
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 71, 188
Hsp92II	CATG	5 cut(s)	52, 86, 95, 101, 217
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	22, 112
LpnPI	CCDG	5 cut(s)	33, 62, 79, 123, 150
Lsp1109I	GCAGC	1 cut(s)	197
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	144, 190
MnlI	CCTC	2 cut(s)	129, 142
MreI	CGCCGGCG	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	66, 137
MspR9I	CCNGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	35, 71, 188
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	94
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	5 cut(s)	52, 86, 95, 101, 217
PagI	TCATGA	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	67
PkrI	GCNGC	4 cut(s)	142, 184, 187, 190
PspPI	GGNCC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	96
SatI	GCNGC	4 cut(s)	141, 183, 186, 189
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	3 cut(s)	19, 91, 134
SgrAI	CRCCGGYG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	96
SsiI	CCGC	3 cut(s)	141, 183, 188
StyD4I	CCNGG	1 cut(s)	135
TauI	GCSGC	3 cut(s)	143, 185, 191
TscAI	CASTG	2 cut(s)	27, 45
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	37, 99, 136, 163
TspRI	CASTG	2 cut(s)	27, 45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.