Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016273

Physical Location & Seq

Genomic Coordinates Forward (+)

65358238 .. 65361668

Gene Structure 3431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG495400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCGGCTCAAAAGTGATGGCTCTTATGGCTGTGTTCGTCGTCGTCATCTCTCTCGCCGGCGTTGCTCAGGCCGCCGACGCTCCCGCTCCCAGCCCGGTCTCACCGGCCGCCTCCATCTCGCCGTCGTTTGTTTCTGGCCTCGTCGCCGCCGCCGTCGCTCTTGTCTTCGGATCTGCTCTCAGGACAATGGCAGGCACAAAAGCTCATCCAGTGGTGGCTCTCGTGGCAGTGCTCATCATGGTCATCTCTCTCGCCGGCGTTGCACAGGCCCATGAAGGTCATGATCATGCTTCTGCTCCTGCGATTCCTCCAAGCACGACCTCCCCGGCCGCCTTCATCTCTCCGTCGTTCGTTTCTGCTTTCATCGCCGCCGCAGCGGCTCTCGTCTTCGGATCTGCTCTCATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

13.2

Weight (kDa)

6.89

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016273)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32230
rosa_chinensis	RchiOBHm_Chr6g0310451 RchiOBHm_Chr6g0310461
rosa_laevigata	RLG00000010481
rosa_multiflora	Rmu_sc0006629.1_g000002 Rmu_sc0020729.1_g000013
rosa_roxburghii	Rroxscaffold_3G00222400 Rroxscaffold_7G00158500 Rroxscaffold_7G00158510
rosa_rugosa	Rorug06G0380500
rosa_samantha	Rh6AG494400 Rh6AG494500 Rh6BG504200 Rh6CG509400 Rh6DG495400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	89
AciI	CCGC	9 cut(s)	75, 87, 111, 150, 153, 333, 372, 375, 380
AclWI	GGATC	2 cut(s)	181, 403
AcoI	YGGCCR	3 cut(s)	3, 108, 330
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	181, 403
AoxI	GGCC	6 cut(s)	3, 72, 108, 139, 270, 330
ApeKI	GCWGC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	2 cut(s)	98, 329
AsuHPI	GGTGA	1 cut(s)	96
BauI	CACGAG	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	160, 382
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	2 cut(s)	13, 125
BceAI	ACGGC	2 cut(s)	109, 140
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	2 cut(s)	98, 329
BcoDI	GTCTC	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	9 cut(s)	75, 111, 150, 153, 333, 372, 375, 378, 381
BlsI	GCNGC	9 cut(s)	76, 112, 151, 154, 334, 373, 376, 379, 382
Bme1390I	CCNGG	2 cut(s)	98, 329
BmgT120I	GGNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	98, 329
BpiI	GAAGAC	2 cut(s)	160, 382
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	98, 329
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	327
Bse118I	RCCGGY	4 cut(s)	5, 59, 106, 257
Bse1I	ACTGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	83, 196
BseNI	ACTGG	1 cut(s)	212
BseX3I	CGGCCG	2 cut(s)	108, 330
BseXI	GCAGC	1 cut(s)	389
BseYI	CCCAGC	1 cut(s)	92
Bsh1285I	CGRYCG	2 cut(s)	111, 333
BshFI	GGCC	6 cut(s)	5, 74, 110, 141, 272, 332
BsiEI	CGRYCG	2 cut(s)	111, 333
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	6 cut(s)	6, 60, 98, 107, 258, 329
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	6 cut(s)	5, 74, 110, 141, 272, 332
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	173, 286, 395
BspACI	CCGC	9 cut(s)	75, 87, 111, 150, 153, 333, 372, 375, 380
BspANI	GGCC	6 cut(s)	5, 74, 110, 141, 272, 332
BspCNI	CTCAG	2 cut(s)	82, 195
BspHI	TCATGA	1 cut(s)	283
BspPI	GGATC	2 cut(s)	181, 403
BspTNI	GGTCTC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	89
BsrFI	RCCGGY	4 cut(s)	5, 59, 106, 257
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	4 cut(s)	5, 59, 106, 257
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	3 cut(s)	173, 286, 395
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	7, 61, 196, 259
BstDEI	CTNAG	2 cut(s)	69, 182
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	176, 289, 398
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	3 cut(s)	173, 286, 395
BstMCI	CGRYCG	2 cut(s)	111, 333
BstSCI	CCNGG	2 cut(s)	96, 327
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	2 cut(s)	160, 382
BstX2I	RGATCY	2 cut(s)	173, 395
BstYI	RGATCY	2 cut(s)	173, 395
BstZI	CGGCCG	2 cut(s)	108, 330
BsuRI	GGCC	6 cut(s)	5, 74, 110, 141, 272, 332
BtgZI	GCGATG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	219, 237
Cac8I	GCNNGC	4 cut(s)	7, 61, 196, 259
CciI	TCATGA	1 cut(s)	283
Cfr10I	RCCGGY	4 cut(s)	5, 59, 106, 257
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	89
CviAII	CATG	4 cut(s)	241, 275, 284, 290
DdeI	CTNAG	2 cut(s)	69, 182
DpnI	GATC	3 cut(s)	175, 288, 397
DpnII	GATC	3 cut(s)	173, 286, 395
EaeI	YGGCCR	3 cut(s)	3, 108, 330
EagI	CGGCCG	2 cut(s)	108, 330
EclXI	CGGCCG	2 cut(s)	108, 330
Eco31I	GGTCTC	1 cut(s)	106
Eco52I	CGGCCG	2 cut(s)	108, 330
FaeI	CATG	4 cut(s)	244, 278, 287, 293
FaiI	YATR	5 cut(s)	29, 242, 276, 285, 291
FatI	CATG	4 cut(s)	240, 274, 283, 289
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	9 cut(s)	75, 111, 150, 153, 333, 372, 375, 378, 381
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	9 cut(s)	75, 111, 150, 153, 333, 372, 375, 378, 381
GluI	GCNGC	9 cut(s)	75, 111, 150, 153, 333, 372, 375, 378, 381
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	6 cut(s)	5, 74, 110, 141, 272, 332
HapII	CCGG	6 cut(s)	6, 60, 98, 107, 258, 329
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	244, 278, 287, 293
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	6 cut(s)	6, 60, 98, 107, 258, 329
HphI	GGTGA	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	173, 395
Hpy188III	TCNNGA	2 cut(s)	184, 284
Hpy99I	CGWCG	7 cut(s)	44, 47, 83, 130, 149, 161, 352
HpyAV	CCTTC	2 cut(s)	272, 346
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	69, 182
Hsp92II	CATG	4 cut(s)	244, 278, 287, 293
KroI	GCCGGC	3 cut(s)	5, 59, 257
KroNI	GCCGGC	3 cut(s)	7, 61, 259
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	173, 286, 395
LmnI	GCTCC	3 cut(s)	88, 94, 304
Lsp1109I	GCAGC	1 cut(s)	389
MalI	GATC	3 cut(s)	175, 288, 397
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	3 cut(s)	173, 286, 395
MboII	GAAGA	2 cut(s)	160, 382
MflI	RGATCY	2 cut(s)	173, 395
MhlI	GDGCHC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	124, 152, 321, 334
MreI	CGCCGGCG	2 cut(s)	59, 257
MroNI	GCCGGC	3 cut(s)	5, 59, 257
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	6 cut(s)	6, 60, 98, 107, 258, 329
MspR9I	CCNGG	2 cut(s)	98, 329
NaeI	GCCGGC	3 cut(s)	7, 61, 259
NciI	CCSGG	2 cut(s)	98, 329
NdeII	GATC	3 cut(s)	173, 286, 395
NgoMIV	GCCGGC	3 cut(s)	5, 59, 257
NlaIII	CATG	4 cut(s)	244, 278, 287, 293
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdiI	GCCGGC	3 cut(s)	7, 61, 259
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	9 cut(s)	76, 112, 151, 154, 334, 373, 376, 379, 382
PspFI	CCCAGC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	173, 395
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	9 cut(s)	75, 111, 150, 153, 333, 372, 375, 378, 381
Sau3AI	GATC	3 cut(s)	173, 286, 395
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	98, 329
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	3 cut(s)	208, 283, 326
SgrAI	CRCCGGYG	2 cut(s)	59, 257
SmiMI	CAYNNNNRTG	1 cut(s)	288
SsiI	CCGC	9 cut(s)	75, 87, 111, 150, 153, 333, 372, 375, 380
StyD4I	CCNGG	2 cut(s)	96, 327
TauI	GCSGC	8 cut(s)	77, 113, 152, 155, 335, 374, 377, 383
TfiI	GAWTC	1 cut(s)	307
TscAI	CASTG	2 cut(s)	219, 237
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	3 cut(s)	291, 328, 355
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	219, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.