Rmu_sc0020729.1_g000013
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020729.1
Physical Location & Seq
Reverse (-)
46156 .. 50538
4383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020729.1_g000013.1.cds

Sequence Viewer

Length: 1230 bp
atggcaggctcaaaagtgatggctcttatggctgtgttcgtcgtcgtcgtcatctctctcgccggcgttgctcaggccgccgatgctcccgctcccagcccggtctcaccggccgcctccatctcgccgtcgtttgtttctggcctcgccgccgccgccgtcgctcttgtcttcggatctgctctcaggagaacgcgccccacccgcggagtaaaggcagaaaatcccgaaggcttgttctctccaggccgaacgctgcggcgccactgccgcagcgttccggcccgggaggggatgctgatgatgagatgcggagggttgtctgagaagaagcgcggtctgggcaagaaggtcgggtcttcgaccttggactggacagacagttcctgttatgtccctctcagatcggagacgatggtgggtgtggagcagcggctcgatagccctttctggtggtgggatctggacctaccattccggcgatctgtgatgtggcggacgagatcaaagcgaggccaggaccggtcgcggttttggatctggctgcgggcgtatgtgggttgtcggatttgtctgcagcgtggtcaggatgcgcggtggagtagggatgcggcggcgtggcgtggtgatgcgtggctgcggagtggtgacatcggagcttgccagcgagtttgggtatttctgtgtcgtgtcgatgccatgttatggtgtcatggtcggtctgctgtgtcatggtatggtctttggttggtgctttttggttatcaacatgatggtgaattacccttacacgtggtctggcgattttgggttgcggtgtccgaacgggtgaaaacagttcatcgtaaggttggtggctgggttgtatcggtttactgttgtttcttggctagtcgattaatccctcttgacttgtcaacttaccttctatctcaattccgctgcacgattgtttctgttggtattccaatggctagccctgatactccacttctagaaggaaggaataccagcaattccagtattcagaaagttgaagtttccattcaaaatctggattcttcctcagctgtagaagtttggaagacgctcaatgatctctatctaaatgaatctgacttctctaagatctatgagttgttgtgcaaggcaacaaggatgaagcaggatggacaagccgtttcagtgttctacactcagctgaagaacatttgggctgagattgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

45.85

Weight (kDa)

9.63

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 261
AccB7I CCANNNNNTGG 1 cut(s) 705
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 5 cut(s) 196, 207, 336, 529, 595
AclWI GGATC 3 cut(s) 184, 468, 545
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 1223
AcvI CACGTG 1 cut(s) 793
AcyI GRCGYC 1 cut(s) 262
AfiI CCNNNNNNNGG 4 cut(s) 206, 291, 372, 705
AflIII ACRYGT 1 cut(s) 790
AgeI ACCGGT 1 cut(s) 522
AgsI TTSAA 2 cut(s) 1037, 1049
AjnI CCWGG 2 cut(s) 244, 516
AloI GAACNNNNNNTCC 2 cut(s) 367, 399
AluBI AGCT 3 cut(s) 659, 1070, 1201
AluI AGCT 3 cut(s) 659, 1070, 1201
Alw26I GTCTC 2 cut(s) 109, 404
AlwI GGATC 3 cut(s) 184, 468, 545
AlwNI CAGNNNCTG 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 6 cut(s) 75, 111, 142, 247, 282, 514
ApeKI GCWGC 7 cut(s) 256, 273, 430, 544, 577, 637, 942
AseI ATTAAT 1 cut(s) 899
AsiGI ACCGGT 1 cut(s) 522
AspLEI GCGC 4 cut(s) 198, 264, 336, 595
AspS9I GGNCC 3 cut(s) 283, 466, 520
AsuC2I CCSGG 3 cut(s) 101, 286, 287
AsuHPI GGTGA 5 cut(s) 99, 638, 659, 788, 841
AsuNHI GCTAGC 1 cut(s) 974
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 466, 520
BanI GGYRCC 1 cut(s) 261
BbrPI CACGTG 1 cut(s) 793
BbsI GAAGAC 3 cut(s) 163, 351, 1091
BbvCI CCTCAGC 1 cut(s) 1066
BbvI GCAGC 7 cut(s) 243, 285, 442, 531, 589, 624, 929
BccI CCATC 5 cut(s) 13, 128, 409, 767, 1163
BceAI ACGGC 3 cut(s) 112, 143, 1163
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 2 cut(s) 246, 518
BcnI CCSGG 3 cut(s) 101, 286, 287
BcoDI GTCTC 2 cut(s) 109, 404
BfaI CTAG 3 cut(s) 891, 975, 995
BfmI CTRYAG 2 cut(s) 575, 1071
BfoI RGCGCY 1 cut(s) 265
BglII AGATCT 1 cut(s) 1128
Bme1390I CCNGG 5 cut(s) 101, 246, 286, 287, 518
Bme18I GGWCC 2 cut(s) 466, 520
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 283, 466, 520
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 5 cut(s) 101, 246, 286, 287, 518
BmsI GCATC 7 cut(s) 73, 285, 299, 580, 598, 619, 685
BmtI GCTAGC 1 cut(s) 978
BpiI GAAGAC 3 cut(s) 163, 351, 1091
BpmI CTGGAG 1 cut(s) 228
Bpu10I CCTNAGC 2 cut(s) 72, 1066
BpuMI CCSGG 3 cut(s) 101, 286, 287
BsaAI YACGTR 1 cut(s) 793
BsaBI GATNNNNATC 1 cut(s) 1101
BsaHI GRCGYC 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 3 cut(s) 205, 285, 366
BsaWI WCCGGW 1 cut(s) 522
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 291, 372, 705
Bse118I RCCGGY 3 cut(s) 62, 109, 522
Bse1I ACTGG 2 cut(s) 377, 1020
Bse8I GATNNNNATC 1 cut(s) 1101
BseBI CCWGG 2 cut(s) 246, 518
BseDI CCNNGG 3 cut(s) 205, 285, 366
BseGI GGATG 5 cut(s) 300, 595, 613, 1164, 1174
BseJI GATNNNNATC 1 cut(s) 1101
BseLI CCNNNNNNNGG 4 cut(s) 206, 291, 372, 705
BseMII CTCAG 7 cut(s) 86, 199, 315, 415, 1080, 1209, 1211
BseNI ACTGG 2 cut(s) 377, 1020
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 7 cut(s) 243, 285, 442, 531, 589, 624, 929
BseYI CCCAGC 2 cut(s) 95, 858
BsgI GTGCAG 1 cut(s) 928
Bsh1236I CGCG 5 cut(s) 196, 207, 336, 529, 595
Bsh1285I CGRYCG 2 cut(s) 114, 527
BshFI GGCC 6 cut(s) 77, 113, 144, 249, 284, 516
BshNI GGYRCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 522
BsiEI CGRYCG 2 cut(s) 114, 527
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 7 cut(s) 63, 101, 110, 281, 286, 478, 523
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 4 cut(s) 206, 291, 372, 705
BsmAI GTCTC 2 cut(s) 109, 404
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 6 cut(s) 77, 113, 144, 249, 284, 516
Bso31I GGTCTC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 285
Bsp143I GATC 8 cut(s) 176, 404, 460, 482, 503, 537, 1096, 1128
BspANI GGCC 6 cut(s) 77, 113, 144, 249, 284, 516
BspCNI CTCAG 7 cut(s) 85, 198, 316, 414, 1079, 1210, 1210
BspFNI CGCG 5 cut(s) 196, 207, 336, 529, 595
BspLI GGNNCC 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 579
BspOI GCTAGC 1 cut(s) 978
BspPI GGATC 3 cut(s) 184, 468, 545
BspT107I GGYRCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 92
BsrFI RCCGGY 3 cut(s) 62, 109, 522
BsrI ACTGG 2 cut(s) 377, 1020
BssAI RCCGGY 3 cut(s) 62, 109, 522
BssECI CCNNGG 3 cut(s) 205, 285, 366
BssMI GATC 8 cut(s) 176, 404, 460, 482, 503, 537, 1096, 1128
BssNI GRCGYC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 246, 518
Bst4CI ACNGT 3 cut(s) 383, 838, 878
BstACI GRCGYC 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 793
BstC8I GCNNGC 6 cut(s) 7, 64, 549, 661, 665, 976
BstDEI CTNAG 8 cut(s) 72, 185, 324, 401, 1066, 1125, 1197, 1218
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 5 cut(s) 300, 595, 613, 1164, 1174
BstFNI CGCG 5 cut(s) 196, 207, 336, 529, 595
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 4 cut(s) 198, 264, 336, 595
BstKTI GATC 8 cut(s) 179, 407, 463, 485, 506, 540, 1099, 1131
BstMAI GTCTC 2 cut(s) 109, 404
BstMBI GATC 8 cut(s) 176, 404, 460, 482, 503, 537, 1096, 1128
BstMCI CGRYCG 2 cut(s) 114, 527
BstMWI GCNNNNNNNGC 9 cut(s) 29, 68, 77, 83, 155, 161, 204, 270, 342
BstNI CCWGG 2 cut(s) 246, 518
BstSCI CCNGG 5 cut(s) 99, 244, 284, 285, 516
BstSFI CTRYAG 2 cut(s) 575, 1071
BstUI CGCG 5 cut(s) 196, 207, 336, 529, 595
BstV1I GCAGC 7 cut(s) 243, 285, 442, 531, 589, 624, 929
BstV2I GAAGAC 3 cut(s) 163, 351, 1091
BstX2I RGATCY 4 cut(s) 176, 460, 537, 1128
BstYI RGATCY 4 cut(s) 176, 460, 537, 1128
BstZI CGGCCG 1 cut(s) 111
BsuRI GGCC 6 cut(s) 77, 113, 144, 249, 284, 516
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 5 cut(s) 300, 595, 613, 1164, 1174
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 265, 1191
Cac8I GCNNGC 6 cut(s) 7, 64, 549, 661, 665, 976
CaiI CAGNNNCTG 1 cut(s) 387
CfoI GCGC 4 cut(s) 198, 264, 336, 595
Cfr10I RCCGGY 3 cut(s) 62, 109, 522
Cfr13I GGNCC 3 cut(s) 283, 466, 520
Cfr42I CCGCGG 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 285
CseI GACGC 1 cut(s) 1096
CspAI ACCGGT 1 cut(s) 522
CviAII CATG 4 cut(s) 700, 713, 732, 770
DdeI CTNAG 8 cut(s) 72, 185, 324, 401, 1066, 1125, 1197, 1218
DinI GGCGCC 1 cut(s) 263
DpnI GATC 8 cut(s) 178, 406, 462, 484, 505, 539, 1098, 1130
DpnII GATC 8 cut(s) 176, 404, 460, 482, 503, 537, 1096, 1128
EaeI YGGCCR 1 cut(s) 111
EagI CGGCCG 1 cut(s) 111
EciI GGCGGA 1 cut(s) 511
EclXI CGGCCG 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 466, 520
Eco52I CGGCCG 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 1223
Eco72I CACGTG 1 cut(s) 793
Eco88I CYCGRG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 244, 516
EcoT14I CCWWGG 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 263
EheI GGCGCC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 4 cut(s) 703, 716, 735, 773
FaqI GGGAC 1 cut(s) 380
FatI CATG 4 cut(s) 699, 712, 731, 769
FauI CCCGC 3 cut(s) 97, 212, 540
FokI GGATG 5 cut(s) 307, 602, 620, 1171, 1181
FspBI CTAG 3 cut(s) 891, 975, 995
GlaI GCGC 4 cut(s) 197, 263, 335, 594
GsaI CCCAGC 2 cut(s) 99, 862
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 6 cut(s) 77, 113, 144, 249, 284, 516
HapII CCGG 7 cut(s) 63, 101, 110, 281, 286, 478, 523
HgaI GACGC 1 cut(s) 1096
HhaI GCGC 4 cut(s) 198, 264, 336, 595
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 4 cut(s) 703, 716, 735, 773
Hin6I GCGC 4 cut(s) 196, 262, 334, 593
HinP1I GCGC 4 cut(s) 196, 262, 334, 593
HincII GTYRAC 1 cut(s) 918
HindII GTYRAC 1 cut(s) 918
HinfI GANTC 2 cut(s) 1058, 1112
HpaII CCGG 7 cut(s) 63, 101, 110, 281, 286, 478, 523
HphI GGTGA 5 cut(s) 99, 638, 659, 788, 841
Hpy166II GTNNAC 2 cut(s) 874, 918
Hpy188I TCNGA 9 cut(s) 176, 325, 404, 409, 567, 656, 823, 1029, 1117
Hpy188III TCNNGA 7 cut(s) 187, 227, 464, 587, 908, 995, 1055
Hpy8I GTNNAC 2 cut(s) 874, 918
Hpy99I CGWCG 5 cut(s) 44, 47, 50, 133, 164
HpyAV CCTTC 5 cut(s) 224, 343, 935, 992, 996
HpyCH4III ACNGT 3 cut(s) 383, 838, 878
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 3 cut(s) 577, 945, 1146
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 68, 77, 83, 155, 161, 204, 270, 342
HpyF3I CTNAG 8 cut(s) 72, 185, 324, 401, 1066, 1125, 1197, 1218
HpySE526I ACGT 1 cut(s) 792
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 4 cut(s) 703, 716, 735, 773
HspAI GCGC 4 cut(s) 196, 262, 334, 593
KasI GGCGCC 1 cut(s) 261
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 8 cut(s) 176, 404, 460, 482, 503, 537, 1096, 1128
LmnI GCTCC 4 cut(s) 91, 97, 427, 656
Lsp1109I GCAGC 7 cut(s) 243, 285, 442, 531, 589, 624, 929
LweI GCATC 7 cut(s) 73, 285, 299, 580, 598, 619, 685
MaeI CTAG 3 cut(s) 891, 975, 995
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 1 cut(s) 647
MalI GATC 8 cut(s) 178, 406, 462, 484, 505, 539, 1098, 1130
MbiI CCGCTC 1 cut(s) 92
MboI GATC 8 cut(s) 176, 404, 460, 482, 503, 537, 1096, 1128
MboII GAAGA 6 cut(s) 163, 340, 351, 1053, 1096, 1216
MflI RGATCY 4 cut(s) 176, 460, 537, 1128
MluCI AATT 3 cut(s) 779, 935, 1015
Mly113I GGCGCC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 8 cut(s) 127, 155, 283, 308, 408, 506, 915, 1075
MreI CGCCGGCG 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 1 cut(s) 899
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 5 cut(s) 207, 433, 942, 1070, 1201
MspI CCGG 7 cut(s) 63, 101, 110, 281, 286, 478, 523
MspR9I CCNGG 5 cut(s) 101, 246, 286, 287, 518
MvaI CCWGG 2 cut(s) 246, 518
MvnI CGCG 5 cut(s) 196, 207, 336, 529, 595
MwoI GCNNNNNNNGC 9 cut(s) 29, 68, 77, 83, 155, 161, 204, 270, 342
NaeI GCCGGC 1 cut(s) 64
NarI GGCGCC 1 cut(s) 262
NciI CCSGG 3 cut(s) 101, 286, 287
NdeII GATC 8 cut(s) 176, 404, 460, 482, 503, 537, 1096, 1128
NgoMIV GCCGGC 1 cut(s) 62
NheI GCTAGC 1 cut(s) 974
NlaIII CATG 4 cut(s) 703, 716, 735, 773
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 647
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 1058, 1112
PflMI CCANNNNNTGG 1 cut(s) 705
PinAI ACCGGT 1 cut(s) 522
PluTI GGCGCC 1 cut(s) 265
PmaCI CACGTG 1 cut(s) 793
PmlI CACGTG 1 cut(s) 793
Ppu21I YACGTR 1 cut(s) 793
PshBI ATTAAT 1 cut(s) 899
Psp6I CCWGG 2 cut(s) 244, 516
PspCI CACGTG 1 cut(s) 793
PspFI CCCAGC 2 cut(s) 95, 858
PspGI CCWGG 2 cut(s) 244, 516
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 3 cut(s) 283, 466, 520
PstI CTGCAG 1 cut(s) 579
PstNI CAGNNNCTG 1 cut(s) 387
PsuI RGATCY 4 cut(s) 176, 460, 537, 1128
PvuII CAGCTG 2 cut(s) 1070, 1201
RseI CAYNNNNRTG 1 cut(s) 774
SacII CCGCGG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 899
Sau3AI GATC 8 cut(s) 176, 404, 460, 482, 503, 537, 1096, 1128
Sau96I GGNCC 3 cut(s) 283, 466, 520
ScrFI CCNGG 5 cut(s) 101, 246, 286, 287, 518
SetI ASST 9 cut(s) 354, 368, 471, 661, 795, 852, 927, 1072, 1203
SfaNI GCATC 7 cut(s) 73, 285, 299, 580, 598, 619, 685
SfcI CTRYAG 2 cut(s) 575, 1071
SfoI GGCGCC 1 cut(s) 263
Sfr303I CCGCGG 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 2 cut(s) 466, 520
SmaI CCCGGG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 774
Sse9I AATT 3 cut(s) 779, 935, 1015
SspDI GGCGCC 1 cut(s) 261
SspMI CTAG 3 cut(s) 891, 975, 995
StyD4I CCNGG 5 cut(s) 99, 244, 284, 285, 516
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 383, 838, 878
TaiI ACGT 1 cut(s) 795
TaqI TCGA 4 cut(s) 362, 438, 693, 895
TaqII GACCGA 1 cut(s) 708
TasI AATT 3 cut(s) 779, 935, 1015
TfiI GAWTC 2 cut(s) 1058, 1112
Tru1I TTAA 1 cut(s) 899
Tru9I TTAA 1 cut(s) 899
TscAI CASTG 2 cut(s) 272, 1191
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 7 cut(s) 256, 273, 430, 544, 577, 637, 942
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 3 cut(s) 830, 1125, 1175
TspMI CCCGGG 1 cut(s) 285
TspRI CASTG 2 cut(s) 272, 1191
Van91I CCANNNNNTGG 1 cut(s) 705
VpaK11BI GGWCC 2 cut(s) 466, 520
VspI ATTAAT 1 cut(s) 899
XbaI TCTAGA 1 cut(s) 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
XmaI CCCGGG 1 cut(s) 285
XspI CTAG 3 cut(s) 891, 975, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.