Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Forward (+)

24756335 .. 24757321

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGGAGGTGTCTCATACTCTTGCGGATGCACCCGTTTCTGTTACTTGGTGCTGCTGCCAGGAGATTTGTTCCCACCGCGCTGAACATACTACGAAATTTAAATGACAAACCAATCTTATATCCTCTTGAATCAGAAGAGAAGGGCCATTCTGCCACGTGGGAAGCAATATATAAGGCAATAGTTTGTGAAAGAGAGGTAGACATCCAAGCGTCTATCAACAGACTAGATGGTGTTTACAAAGATCTGATTGCGACTATGTACAACGACTATCAACGAACTCGTCAAAAGAGCAGTGATCCAGTACGGAATAACAATGCCATTGATGAATTAATTCCTACAGGTGAGGACTTCTATCCAGTTGTATGCAAAGCATTTCACGAGGTGCCTACCGAAATGTATCTGTCCTTTTGGCTATATCGAATACCTCCAAGCGAAGACTTTCCCAGTCATTTGATTAACTTGGAATTTGTTGAAGCCCTGAGTTTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

19.08

Weight (kDa)

5.4

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	80
AciI	CCGC	2 cut(s)	25, 78
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	97, 467
AcvI	CACGTG	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	385
AfaI	GTAC	2 cut(s)	263, 306
AgsI	TTSAA	2 cut(s)	131, 476
AjnI	CCWGG	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	53, 56
ApoI	RAATTY	2 cut(s)	97, 467
AseI	ATTAAT	1 cut(s)	332
Asp700I	GAANNNNTTC	2 cut(s)	333, 441
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	385
BauI	CACGAG	1 cut(s)	380
BbrPI	CACGTG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	40, 43
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	302, 359, 447
BseBI	CCWGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	33, 204
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	3 cut(s)	302, 359, 447
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	2 cut(s)	40, 43
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	147
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	244, 298
BspACI	CCGC	2 cut(s)	25, 78
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	385
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	302, 359, 447
BssMI	GATC	2 cut(s)	244, 298
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	482
BstF5I	GGATG	2 cut(s)	33, 204
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	247, 301
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	244, 298
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	40, 43
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	33, 204
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	301
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	262, 305
CviJI	RGCY	3 cut(s)	147, 415, 479
CviKI_1	RGCY	3 cut(s)	147, 415, 479
CviQI	GTAC	2 cut(s)	262, 305
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	2 cut(s)	246, 300
DpnII	GATC	2 cut(s)	244, 298
DraI	TTTAAA	1 cut(s)	102
DraIII	CACNNNGTG	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco72I	CACGTG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	59
FaiI	YATR	8 cut(s)	17, 89, 121, 172, 174, 260, 367, 418
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	2 cut(s)	40, 191
Fsp4HI	GCNGC	2 cut(s)	54, 57
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	54, 57
HaeIII	GGCC	1 cut(s)	147
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	202, 238
Hpy188I	TCNGA	2 cut(s)	136, 249
Hpy188III	TCNNGA	2 cut(s)	128, 380
Hpy8I	GTNNAC	2 cut(s)	202, 238
HpyAV	CCTTC	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	31, 369
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	1 cut(s)	158
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	244, 298
LpnPI	CCDG	6 cut(s)	46, 73, 315, 327, 372, 460
Lsp1109I	GCAGC	2 cut(s)	40, 43
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	2 cut(s)	246, 300
MboI	GATC	2 cut(s)	244, 298
MboII	GAAGA	2 cut(s)	149, 449
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	4 cut(s)	97, 329, 333, 467
MnlI	CCTC	5 cut(s)	135, 190, 340, 376, 438
MroXI	GAANNNNTTC	2 cut(s)	333, 441
MseI	TTAA	3 cut(s)	101, 332, 459
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	80
NdeII	GATC	2 cut(s)	244, 298
NlaIV	GGNNCC	1 cut(s)	387
PdmI	GAANNNNTTC	2 cut(s)	333, 441
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	55, 58
PmaCI	CACGTG	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	159
Ppu21I	YACGTR	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	59
PspCI	CACGTG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	263, 306
RsaNI	GTAC	2 cut(s)	262, 305
SaqAI	TTAA	3 cut(s)	101, 332, 459
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	2 cut(s)	244, 298
Sau96I	GGNCC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	6 cut(s)	11, 161, 201, 346, 387, 430
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	339
SmiI	ATTTAAAT	1 cut(s)	102
Sse9I	AATT	4 cut(s)	97, 329, 333, 467
SsiI	CCGC	2 cut(s)	25, 78
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	59
SwaI	ATTTAAAT	1 cut(s)	102
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	421, 489
TasI	AATT	4 cut(s)	97, 329, 333, 467
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	101, 332, 459
Tru9I	TTAA	3 cut(s)	101, 332, 459
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	53, 56
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	301
VspI	ATTAAT	1 cut(s)	332
XapI	RAATTY	2 cut(s)	97, 467
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	2 cut(s)	333, 441
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.