Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Forward (+)

20264307 .. 20265444

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTCATGGTCCCTATCAACTATAAAGAATTCATTAATGATCTCATTAACCTGGTCAAGAATAACGTTGTCCCAATGGATCGTATTGATGATGCTGTGGGAAGGATTCTGCTTGTCAAATTCACCATGGATCTTTTTGAGAACCCGTTGGCTGATTTCAGCCTAGTCAATGAGCTTGGAAGCCAGGATCATAGAGATTTGGCAAGGGAGGCTGTCAGAAAATCCGTCATGCTTTTGAAGAATGGGAAAAGCGGGAAAATTACAGATCCAGTCATGCTGATAATCTGGGCTACCAATGTGGTGGATGGACAATTGCATGGGACTACGATCCTTGGTGCTATAAAATCAGCAGTCGACTCAAGCACAGAAGTTATCTACAGTGAGAATCCTGATGGTAATTTCGTAAAGTCCAACAACTTTGCATATGCCATCGTTGTGGTTGCGAGCATCCTTATTCTGAGACTGCAGGAGACAGCCCAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

162

Amino Acids

17.8

Weight (kDa)

5.11

Isoelectric Point (pI)

15.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	252
AclI	AACGTT	1 cut(s)	66
AclWI	GGATC	5 cut(s)	87, 138, 195, 260, 322
AcsI	RAATTY	2 cut(s)	29, 119
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	51, 183
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	454, 464
AlwI	GGATC	5 cut(s)	87, 138, 195, 260, 322
ApoI	RAATTY	2 cut(s)	29, 119
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	10
BccI	CCATC	3 cut(s)	299, 386, 437
BciT130I	CCWGG	2 cut(s)	53, 185
BcoDI	GTCTC	2 cut(s)	454, 464
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	2 cut(s)	376, 464
Bme1390I	CCNGG	2 cut(s)	53, 185
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	53, 185
BmsI	GCATC	2 cut(s)	82, 456
BpuEI	CTTGAG	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	126, 331
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	53, 185
BseDI	CCNNGG	2 cut(s)	126, 331
BseGI	GGATG	2 cut(s)	310, 447
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	269
BslFI	GGGAC	2 cut(s)	56, 334
BsmAI	GTCTC	2 cut(s)	454, 464
BsmFI	GGGAC	2 cut(s)	56, 334
Bsp143I	GATC	6 cut(s)	40, 79, 130, 187, 265, 327
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	5 cut(s)	87, 138, 195, 260, 322
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	126, 331
BssMI	GATC	6 cut(s)	40, 79, 130, 187, 265, 327
BssT1I	CCWWGG	2 cut(s)	126, 331
Bst2UI	CCWGG	2 cut(s)	53, 185
Bst4CI	ACNGT	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	310, 447
BstKTI	GATC	6 cut(s)	43, 82, 133, 190, 268, 330
BstMAI	GTCTC	2 cut(s)	454, 464
BstMBI	GATC	6 cut(s)	40, 79, 130, 187, 265, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	2 cut(s)	53, 185
BstSCI	CCNGG	2 cut(s)	51, 183
BstSFI	CTRYAG	2 cut(s)	376, 464
BstX2I	RGATCY	2 cut(s)	130, 265
BstXI	CCANNNNNNTGG	2 cut(s)	301, 436
BstYI	RGATCY	2 cut(s)	130, 265
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	310, 447
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	10
CsiI	ACCWGGT	1 cut(s)	51
CviAII	CATG	5 cut(s)	7, 127, 229, 274, 317
CviJI	RGCY	7 cut(s)	152, 162, 175, 183, 212, 290, 476
CviKI_1	RGCY	7 cut(s)	152, 162, 175, 183, 212, 290, 476
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	6 cut(s)	42, 81, 132, 189, 267, 329
DpnII	GATC	6 cut(s)	40, 79, 130, 187, 265, 327
Eco130I	CCWWGG	2 cut(s)	126, 331
Eco47I	GGWCC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	51, 183
EcoT14I	CCWWGG	2 cut(s)	126, 331
ErhI	CCWWGG	2 cut(s)	126, 331
FaeI	CATG	5 cut(s)	10, 130, 232, 277, 320
FaqI	GGGAC	2 cut(s)	56, 334
FatI	CATG	5 cut(s)	6, 126, 228, 273, 316
FauI	CCCGC	1 cut(s)	245
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	354
FokI	GGATG	2 cut(s)	317, 434
FspBI	CTAG	1 cut(s)	164
Hin1II	CATG	5 cut(s)	10, 130, 232, 277, 320
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	106, 356, 385
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	218, 459
Hpy188III	TCNNGA	2 cut(s)	58, 389
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	316, 422, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	10, 130, 232, 277, 320
Kzo9I	GATC	6 cut(s)	40, 79, 130, 187, 265, 327
LpnPI	CCDG	8 cut(s)	38, 65, 170, 197, 271, 282, 402, 452
LweI	GCATC	2 cut(s)	82, 456
MabI	ACCWGGT	1 cut(s)	51
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	66
MalI	GATC	6 cut(s)	42, 81, 132, 189, 267, 329
MboI	GATC	6 cut(s)	40, 79, 130, 187, 265, 327
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	311
MflI	RGATCY	2 cut(s)	130, 265
MluCI	AATT	5 cut(s)	29, 119, 258, 311, 397
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	1 cut(s)	202
MseI	TTAA	2 cut(s)	36, 48
MslI	CAYNNNNRTG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	53, 185
MunI	CAATTG	1 cut(s)	311
MvaI	CCWGG	2 cut(s)	53, 185
MwoI	GCNNNNNNNGC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	6 cut(s)	40, 79, 130, 187, 265, 327
NlaIII	CATG	5 cut(s)	10, 130, 232, 277, 320
NlaIV	GGNNCC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	106, 385
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	36
Psp1406I	AACGTT	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	51, 183
PspGI	CCWGG	2 cut(s)	51, 183
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	130, 265
RseI	CAYNNNNRTG	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	36, 48
Sau3AI	GATC	6 cut(s)	40, 79, 130, 187, 265, 327
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	53, 185
SetI	ASST	4 cut(s)	54, 69, 177, 485
SexAI	ACCWGGT	1 cut(s)	51
SfaNI	GCATC	2 cut(s)	82, 456
SfcI	CTRYAG	2 cut(s)	376, 464
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	29, 119, 258, 311, 397
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	51, 183
StyI	CCWWGG	2 cut(s)	126, 331
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	29, 119, 258, 311, 397
TfiI	GAWTC	2 cut(s)	106, 385
Tru1I	TTAA	2 cut(s)	36, 48
Tru9I	TTAA	2 cut(s)	36, 48
TscAI	CASTG	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	10
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	2 cut(s)	29, 119
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.