Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Reverse (-)

80137046 .. 80145877

Gene Structure 8832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCATGATGACCTTCTCATATATGAGAAGGATGCGAATAGATTGGGGGTTGAGGTTTCTGAACTCAATGGAAAGCTTACTGGTATGGTCCGTATGACAGCTTGGGCTTTCAATGTGGAGGCTGGACGATCACATGGCAAGGCCTCGGTGGCAATGATCTTACAGCTGGCACTTCAATTGCTGTTGTTAATGACCATGAATATGTATTTTCTGAGAATGGTCTTGTGGCTCACAAAGATGGAAAGCTCATTGGCACCCAGTGCAAAAATGACCACATCAATCTCTGTGATGTCAATCCCTTCAAATATCAGAATCAAAGTGTGTGTGTGCAGACTGTGGAGGGAGAAGAAATTGAAAACCTGCACTGCATATTGGTTGATGAACAGAATGATGCTATCCATGCTATTGTCAAAGAAGCTGATTAAGAGGTTGTATCCTCTCATATTCAGCAGGGCAAGATCTACGAAATCACTTGGTTCTATACCAAGTAGAGCCCGTCATTCACTCAGTTCTAATAAGCAGAGCCAGTCATTGTACAAAATTGTACCTCACTTCACACAGCTTTATTTCAATCAAAGGACAGTTTTCACCCCAGTACCGAATTTGCTCCCACCTATTCCAGAACATCATTTCTACCTAATGCACTGCAACCAGCTGCTCATTCACATTGACAACAACAAAATACTCACAGAAATCGTCATGCAAAGCATCTGCTGGAGAATGAAGAATGGCATCGAAGGCGGTTCCTTGGCTTTACATGAGATTCATATCATCAATGGTGTCGCTAGACTACCACAACCGAATAATTACAACCGTTTAGTGCACAAGAATTACATCGAAGGATACAAAGAATTCTTTGTAGAATTATTTGAAGGCTGCAATGAACCACTCCACGACTGGCAATATTTAGACATCAAGAATTATGTGATACACCACATGACCACTGTGGAACATATGTCGTTTTTGCGTTTACACCCATATTTTTCAGATGCTGCTACTGCTAGGAGATTCGTTCCATGCGCACTCCAAAGACTGCGGAATTTAAATAATAAACCCATGCCATATCCTACCCGATCAGAAATTGAGCACAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

42.53

Weight (kDa)

9.75

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1021
Acc36I	ACCTGC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	253
AciI	CCGC	2 cut(s)	741, 1036
AcsI	RAATTY	3 cut(s)	601, 851, 1039
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	3 cut(s)	536, 546, 597
AgsI	TTSAA	6 cut(s)	112, 176, 303, 355, 571, 872
AluBI	AGCT	7 cut(s)	76, 101, 166, 246, 418, 562, 655
AluI	AGCT	7 cut(s)	76, 101, 166, 246, 418, 562, 655
Alw21I	GWGCWC	2 cut(s)	825, 1089
Alw44I	GTGCAC	1 cut(s)	821
AlwNI	CAGNNNCTG	1 cut(s)	992
AoxI	GGCC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	821
ApeKI	GCWGC	3 cut(s)	655, 876, 992
ApoI	RAATTY	3 cut(s)	601, 851, 1039
AspLEI	GCGC	1 cut(s)	1022
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	580
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	825
BaeI	ACNNNNGTAYC	2 cut(s)	579, 612
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	496
Bbv12I	GWGCWC	2 cut(s)	825, 1089
BbvI	GCAGC	3 cut(s)	642, 863, 979
BccI	CCATC	1 cut(s)	232
BciVI	GTATCC	2 cut(s)	444, 836
BfaI	CTAG	2 cut(s)	786, 1002
BfuAI	ACCTGC	1 cut(s)	368
BfuI	GTATCC	2 cut(s)	444, 836
BglI	GCCNNNNNGGC	1 cut(s)	149
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	3 cut(s)	656, 877, 993
BlsI	GCNGC	3 cut(s)	657, 878, 994
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	255, 745
BmrI	ACTGGG	2 cut(s)	252, 587
BmsI	GCATC	5 cut(s)	22, 381, 717, 741, 979
BmuI	ACTGGG	2 cut(s)	252, 587
BpmI	CTGGAG	1 cut(s)	736
BsaBI	GATNNNNATC	2 cut(s)	293, 767
BsaJI	CCNNGG	2 cut(s)	144, 747
Bse1I	ACTGG	5 cut(s)	85, 258, 526, 593, 902
Bse3DI	GCAATG	2 cut(s)	159, 886
Bse8I	GATNNNNATC	2 cut(s)	293, 767
BseDI	CCNNGG	2 cut(s)	144, 747
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	2 cut(s)	293, 767
BseMI	GCAATG	2 cut(s)	159, 886
BseMII	CTCAG	2 cut(s)	203, 520
BseNI	ACTGG	5 cut(s)	85, 258, 526, 593, 902
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	3 cut(s)	642, 863, 979
BsgI	GTGCAG	2 cut(s)	346, 349
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	825, 1089
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	496, 825, 1089
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	128, 156, 458, 1073
BspACI	CCGC	2 cut(s)	741, 1036
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	204, 519
BspLI	GGNNCC	2 cut(s)	255, 745
BspMI	ACCTGC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	253
BsrDI	GCAATG	2 cut(s)	159, 886
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	5 cut(s)	85, 258, 526, 593, 902
BssECI	CCNNGG	2 cut(s)	144, 747
BssMI	GATC	4 cut(s)	128, 156, 458, 1073
BssT1I	CCWWGG	1 cut(s)	747
Bst4CI	ACNGT	4 cut(s)	336, 583, 815, 946
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	212, 506
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	1022
BstKTI	GATC	4 cut(s)	131, 159, 461, 1076
BstMBI	GATC	4 cut(s)	128, 156, 458, 1073
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 260, 400, 738, 998
BstSLI	GKGCMC	1 cut(s)	825
BstV1I	GCAGC	3 cut(s)	642, 863, 979
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BsuI	GTATCC	2 cut(s)	444, 836
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	2 cut(s)	363, 643
BtsIMutI	CAGTG	4 cut(s)	265, 363, 643, 942
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	992
CfoI	GCGC	1 cut(s)	1022
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	535, 545, 596
CviAII	CATG	9 cut(s)	5, 134, 196, 400, 700, 758, 937, 1017, 1057
CviQI	GTAC	3 cut(s)	535, 545, 596
DdeI	CTNAG	2 cut(s)	212, 506
DpnI	GATC	4 cut(s)	130, 158, 460, 1075
DpnII	GATC	4 cut(s)	128, 156, 458, 1073
DraI	TTTAAA	1 cut(s)	1044
DraIII	CACNNNGTG	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	747
Eco147I	AGGCCT	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	851
EcoT14I	CCWWGG	1 cut(s)	747
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	9 cut(s)	8, 137, 199, 403, 703, 761, 940, 1020, 1060
FatI	CATG	9 cut(s)	4, 133, 195, 399, 699, 757, 936, 1016, 1056
FauNDI	CATATG	1 cut(s)	954
Fnu4HI	GCNGC	3 cut(s)	656, 877, 993
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	3 cut(s)	656, 877, 993
FspAI	RTGCGCAY	1 cut(s)	1021
FspBI	CTAG	2 cut(s)	786, 1002
FspI	TGCGCA	1 cut(s)	1021
GlaI	GCGC	1 cut(s)	1021
GluI	GCNGC	3 cut(s)	656, 877, 993
GsuI	CTGGAG	1 cut(s)	736
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	1022
Hin1II	CATG	9 cut(s)	8, 137, 199, 403, 703, 761, 940, 1020, 1060
Hin6I	GCGC	1 cut(s)	1020
HinP1I	GCGC	1 cut(s)	1020
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	3 cut(s)	312, 763, 1008
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	823, 971
Hpy188I	TCNGA	5 cut(s)	61, 213, 311, 988, 1078
Hpy188III	TCNNGA	2 cut(s)	620, 916
Hpy8I	GTNNAC	2 cut(s)	823, 971
HpyAV	CCTTC	6 cut(s)	22, 23, 309, 731, 833, 866
HpyCH4III	ACNGT	4 cut(s)	336, 583, 815, 946
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 260, 400, 738, 998
HpyF3I	CTNAG	2 cut(s)	212, 506
Hsp92II	CATG	9 cut(s)	8, 137, 199, 403, 703, 761, 940, 1020, 1060
HspAI	GCGC	1 cut(s)	1020
Kzo9I	GATC	4 cut(s)	128, 156, 458, 1073
LmnI	GCTCC	1 cut(s)	612
Lsp1109I	GCAGC	3 cut(s)	642, 863, 979
LweI	GCATC	5 cut(s)	22, 381, 717, 741, 979
MaeI	CTAG	2 cut(s)	786, 1002
MalI	GATC	4 cut(s)	130, 158, 460, 1075
MboI	GATC	4 cut(s)	128, 156, 458, 1073
MboII	GAAGA	2 cut(s)	358, 736
MfeI	CAATTG	1 cut(s)	176
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	3 cut(s)	496, 825, 1089
MnlI	CCTC	7 cut(s)	46, 112, 154, 333, 420, 447, 558
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	188, 423, 1043
MslI	CAYNNNNRTG	2 cut(s)	200, 236
MspA1I	CMGCKG	2 cut(s)	166, 655
MunI	CAATTG	1 cut(s)	176
MwoI	GCNNNNNNNGC	5 cut(s)	149, 260, 400, 738, 998
NdeI	CATATG	1 cut(s)	954
NdeII	GATC	4 cut(s)	128, 156, 458, 1073
NlaIII	CATG	9 cut(s)	8, 137, 199, 403, 703, 761, 940, 1020, 1060
NlaIV	GGNNCC	2 cut(s)	255, 745
NsbI	TGCGCA	1 cut(s)	1021
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	312, 763, 1008
PkrI	GCNGC	3 cut(s)	657, 878, 994
PspN4I	GGNNCC	2 cut(s)	255, 745
PspPI	GGNCC	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	992
PsuI	RGATCY	1 cut(s)	458
PvuII	CAGCTG	2 cut(s)	166, 655
RsaI	GTAC	3 cut(s)	536, 546, 597
RsaNI	GTAC	3 cut(s)	535, 545, 596
RseI	CAYNNNNRTG	2 cut(s)	200, 236
SaqAI	TTAA	3 cut(s)	188, 423, 1043
SatI	GCNGC	3 cut(s)	656, 877, 993
Sau3AI	GATC	4 cut(s)	128, 156, 458, 1073
Sau96I	GGNCC	1 cut(s)	88
SduI	GDGCHC	3 cut(s)	496, 825, 1089
SfaNI	GCATC	5 cut(s)	22, 381, 717, 741, 979
SinI	GGWCC	1 cut(s)	88
SmiI	ATTTAAAT	1 cut(s)	1044
SmiMI	CAYNNNNRTG	2 cut(s)	200, 236
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	2 cut(s)	741, 1036
SspI	AATATT	1 cut(s)	905
SspMI	CTAG	2 cut(s)	786, 1002
StuI	AGGCCT	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	747
SwaI	ATTTAAAT	1 cut(s)	1044
TaaI	ACNGT	4 cut(s)	336, 583, 815, 946
TaqI	TCGA	2 cut(s)	735, 837
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	312, 763, 1008
Tru1I	TTAA	3 cut(s)	188, 423, 1043
Tru9I	TTAA	3 cut(s)	188, 423, 1043
TscAI	CASTG	4 cut(s)	265, 370, 650, 949
TseI	GCWGC	3 cut(s)	655, 876, 992
TspDTI	ATGAA	5 cut(s)	212, 395, 737, 755, 897
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	4 cut(s)	265, 370, 650, 949
VneI	GTGCAC	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	3 cut(s)	601, 851, 1039
XcmI	CCANNNNNNNNNTGG	1 cut(s)	894
XspI	CTAG	2 cut(s)	786, 1002
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.