Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Reverse (-)

80516655 .. 80517768

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTCTTCGCGGGCAGTTCGTTGCTCTCAAGGTCACGATTCAAATGCCACACTCAATTCTTCTAAACCCAACCGTTCTTATTCTACCATCTATCTATCTAGACTCACTCTCGAGAATCTAAAAGACTCTCCACGAATAGACCTAAAAAAGATTCATACAGTAAACGTCATGGAAAGCATCTACTGGAGAAAGAAGAATGGCATCCATAGCGGTTCCTTGGCTTTACATCAGATTGATATTATCGGTCGTAAAGCTAGACTGCCACAAGAGATTGACGACCTTTCGGTGCACAAGGATTATATTGAAGGATTCAAAGATTTCTTTGCAGAATTATTTGGAGGCTGTAATGAACCACTCCACGACTGGCAATATTTAGACATCAAAGAATATGTGAATACTCATATGATCACAGAGGAACAAATGATGTTCTTGTCCTTGCACCCATATTTCGAAACAAATCGTGAAGCTGCTATGAATTTCGTTCCATTTGCCCTCCAAACATTGCAATATTTAGATGGTGTGCTCTTGCCATATCCTATTCAATCAACAACTGTGCACTCGGGTGAAACGAAAAGGAGCACCTGGGAAGAGATATATAGGGAAGCGTTTTGTTCAAGGGAAGTTCACATCTTGAAGTCTATACAGAGACTTGATGATGGTGATTACAAAGATGCATTTATGTCACTGTATGAGGACAGAAAAGCAAAAGGCAATCCGTATAACGATCATGATCCCATAGATGAAATAATATTTTTCTCAAAAGTGTGTACACATATAAGAAAGCATATGGAGATACCTAAAGTTGAAGATTTCTACCCAGTCTTGTGTCGAGTGTTTCAAGAGGTGCCCACTGAAATGTTTAACTTCTTTTGGATCTATCAAGAATCTCCGAGTGGAGACTTTCCAAGTGAAGTATTTAACTTAAACTTTGTCATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

36.77

Weight (kDa)

5.72

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	844
AccII	CGCG	1 cut(s)	10
AciI	CCGC	2 cut(s)	10, 210
AclWI	GGATC	2 cut(s)	725, 881
AcsI	RAATTY	1 cut(s)	475
AfaI	GTAC	1 cut(s)	769
AgsI	TTSAA	8 cut(s)	42, 305, 313, 542, 615, 634, 806, 839
AjnI	CCWGG	1 cut(s)	581
AleI	CACNNNNGTG	1 cut(s)	561
AluBI	AGCT	2 cut(s)	254, 467
AluI	AGCT	2 cut(s)	254, 467
Alw21I	GWGCWC	4 cut(s)	291, 525, 558, 581
Alw26I	GTCTC	2 cut(s)	640, 891
Alw44I	GTGCAC	2 cut(s)	287, 554
AlwI	GGATC	2 cut(s)	725, 881
Ama87I	CYCGRG	2 cut(s)	110, 559
ApaLI	GTGCAC	2 cut(s)	287, 554
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	575, 671
AsuII	TTCGAA	1 cut(s)	450
AvaI	CYCGRG	2 cut(s)	110, 559
BaeGI	GKGCMC	3 cut(s)	291, 558, 849
BanI	GGYRCC	1 cut(s)	844
Bbv12I	GWGCWC	4 cut(s)	291, 525, 558, 581
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	95, 509, 650
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	583
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	2 cut(s)	640, 891
BfaI	CTAG	2 cut(s)	99, 255
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	583
BmeT110I	CYCGRG	2 cut(s)	110, 559
BmiI	GGNNCC	2 cut(s)	214, 846
BmrFI	CCNGG	1 cut(s)	583
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	3 cut(s)	186, 210, 661
BmuI	ACTGGG	1 cut(s)	812
BpmI	CTGGAG	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	216, 582
Bse1I	ACTGG	3 cut(s)	188, 368, 818
Bse3DI	GCAATG	1 cut(s)	500
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	2 cut(s)	216, 582
BseGI	GGATG	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	500
BseNI	ACTGG	3 cut(s)	188, 368, 818
BseSI	GKGCMC	3 cut(s)	291, 558, 849
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	844
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	4 cut(s)	291, 525, 558, 581
BsiHKCI	CYCGRG	2 cut(s)	110, 559
BsmAI	GTCTC	2 cut(s)	640, 891
BsoBI	CYCGRG	2 cut(s)	110, 559
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	5 cut(s)	291, 525, 558, 581, 849
Bsp1407I	TGTACA	1 cut(s)	767
Bsp143I	GATC	4 cut(s)	405, 724, 730, 873
BspACI	CCGC	2 cut(s)	10, 210
BspFNI	CGCG	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	2 cut(s)	214, 846
BspPI	GGATC	2 cut(s)	725, 881
BspT104I	TTCGAA	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	844
BsrDI	GCAATG	1 cut(s)	500
BsrGI	TGTACA	1 cut(s)	767
BsrI	ACTGG	3 cut(s)	188, 368, 818
BssECI	CCNNGG	2 cut(s)	216, 582
BssMI	GATC	4 cut(s)	405, 724, 730, 873
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	4 cut(s)	74, 160, 553, 687
Bst6I	CTCTTC	1 cut(s)	582
BstAUI	TGTACA	1 cut(s)	767
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	408, 727, 733, 876
BstMAI	GTCTC	2 cut(s)	640, 891
BstMBI	GATC	4 cut(s)	405, 724, 730, 873
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	581
BstSLI	GKGCMC	3 cut(s)	291, 558, 849
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	873
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	683, 849
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	727
Csp6I	GTAC	1 cut(s)	768
CviAII	CATG	2 cut(s)	169, 728
CviJI	RGCY	4 cut(s)	221, 254, 342, 467
CviKI_1	RGCY	4 cut(s)	221, 254, 342, 467
CviQI	GTAC	1 cut(s)	768
DpnI	GATC	4 cut(s)	407, 726, 732, 875
DpnII	GATC	4 cut(s)	405, 724, 730, 873
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	216
Eco88I	CYCGRG	2 cut(s)	110, 559
EcoRII	CCWGG	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	172, 731
FatI	CATG	2 cut(s)	168, 727
FauI	CCCGC	1 cut(s)	3
FauNDI	CATATG	2 cut(s)	402, 786
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	99, 255
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	205
Hin1II	CATG	2 cut(s)	172, 731
HinfI	GANTC	7 cut(s)	38, 102, 115, 125, 151, 309, 884
HphI	GGTGA	2 cut(s)	575, 671
Hpy166II	GTNNAC	6 cut(s)	163, 289, 556, 625, 768, 770
Hpy188I	TCNGA	2 cut(s)	231, 891
Hpy188III	TCNNGA	9 cut(s)	35, 99, 110, 112, 461, 631, 728, 839, 881
Hpy8I	GTNNAC	6 cut(s)	163, 289, 556, 625, 768, 770
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	4 cut(s)	74, 160, 553, 687
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	289, 326, 439, 505, 556, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	172, 731
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	405, 724, 730, 873
LmnI	GCTCC	1 cut(s)	576
LpnPI	CCDG	6 cut(s)	169, 349, 568, 595, 831, 922
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	3 cut(s)	186, 210, 661
MaeI	CTAG	2 cut(s)	99, 255
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	32, 681
MalI	GATC	4 cut(s)	407, 726, 732, 875
MboI	GATC	4 cut(s)	405, 724, 730, 873
MboII	GAAGA	4 cut(s)	51, 205, 599, 818
MflI	RGATCY	1 cut(s)	873
MhlI	GDGCHC	5 cut(s)	291, 525, 558, 581, 849
MluCI	AATT	3 cut(s)	55, 329, 475
MlyI	GAGTC	2 cut(s)	96, 119
MnlI	CCTC	5 cut(s)	332, 406, 503, 685, 835
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	3 cut(s)	861, 918, 923
MslI	CAYNNNNRTG	2 cut(s)	561, 854
MspR9I	CCNGG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	583
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeI	CATATG	2 cut(s)	402, 786
NdeII	GATC	4 cut(s)	405, 724, 730, 873
NlaIII	CATG	2 cut(s)	172, 731
NlaIV	GGNNCC	2 cut(s)	214, 846
NmuCI	GTSAC	2 cut(s)	32, 681
NsiI	ATGCAT	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	450
OliI	CACNNNNGTG	1 cut(s)	561
PaeR7I	CTCGAG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PfeI	GAWTC	5 cut(s)	38, 115, 151, 309, 884
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	2 cut(s)	96, 119
PpsI	GAGTC	2 cut(s)	96, 119
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	214, 846
PsuI	RGATCY	1 cut(s)	873
RsaI	GTAC	1 cut(s)	769
RsaNI	GTAC	1 cut(s)	768
RseI	CAYNNNNRTG	2 cut(s)	561, 854
SaqAI	TTAA	3 cut(s)	861, 918, 923
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	405, 724, 730, 873
SchI	GAGTC	2 cut(s)	96, 119
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	5 cut(s)	291, 525, 558, 581, 849
SfaNI	GCATC	3 cut(s)	186, 210, 661
Sfr274I	CTCGAG	1 cut(s)	110
SfuI	TTCGAA	1 cut(s)	450
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	561, 854
SmlI	CTYRAG	2 cut(s)	27, 110
SmoI	CTYRAG	2 cut(s)	27, 110
Sse9I	AATT	3 cut(s)	55, 329, 475
SsiI	CCGC	2 cut(s)	10, 210
SspI	AATATT	3 cut(s)	371, 509, 750
SspMI	CTAG	2 cut(s)	99, 255
StyD4I	CCNGG	1 cut(s)	581
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	4 cut(s)	74, 160, 553, 687
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	111, 450, 829
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	55, 329, 475
TatI	WGTACW	1 cut(s)	767
TfiI	GAWTC	5 cut(s)	38, 115, 151, 309, 884
Tru1I	TTAA	3 cut(s)	861, 918, 923
Tru9I	TTAA	3 cut(s)	861, 918, 923
TscAI	CASTG	2 cut(s)	690, 856
TseFI	GTSAC	2 cut(s)	32, 681
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	2 cut(s)	32, 681
TspDTI	ATGAA	4 cut(s)	143, 363, 488, 756
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	690, 856
VneI	GTGCAC	2 cut(s)	287, 554
XapI	RAATTY	1 cut(s)	475
XbaI	TCTAGA	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	360
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	2 cut(s)	99, 255
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.