Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Reverse (-)

87776401 .. 87777007

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG652100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCATTTTTGCGTTTACACCCATATTTTTCAGATGCTGCTACTGCTAGGAGATTCGTTCCCTGGGCACTCCAAAGACTGCGGAATTTAAATAATAAACTCTTGCCATATCCTATTCAAGCAAACAGGGACAGTTATGACACATGGCAAGAGATTTATCGGAAAGTAATTTGTTCTAGAAAAGTTCACATCGAAAAGTCTATCCAGAGACTTGATGATGGTATTTACAGATATGTAATTATGTCTATGTACGAGGACTATAAAGCAAAAGGCAAGTCTCCTGACAGGAGCCCAATAAACAATGATGATCCCATAGATGAACTAATATTTTTCGAAAACGTGTGCACACATATAAGAAAGCATATGGAGATACCTGTAGGTGAAGATTTCTACCCAGTTTTATGCCAGGCGTTGCGAGAGGTGCCCACCGAAATGTTTGGCTTGTTTTGGATGTATCGAGAACCTCCAAGTCAAGATTTTCCGAGTAAAGTGATTAACTTAGAATTTGTTCGAACCCTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

20.87

Weight (kDa)

8.39

Isoelectric Point (pI)

61.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	85, 503
AfaI	GTAC	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	62, 405
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	2 cut(s)	202, 282
Alw44I	GTGCAC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	38
ApaLI	GTGCAC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	85, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp700I	GAANNNNTTC	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	392
AsuII	TTCGAA	2 cut(s)	333, 511
BaeGI	GKGCMC	3 cut(s)	70, 347, 426
BanI	GGYRCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	2 cut(s)	64, 407
BcoDI	GTCTC	2 cut(s)	202, 282
BfaI	CTAG	2 cut(s)	48, 177
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	64, 407
BmiI	GGNNCC	2 cut(s)	290, 423
BmrFI	CCNGG	2 cut(s)	64, 407
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	389
Bpu14I	TTCGAA	2 cut(s)	333, 511
BsaJI	CCNNGG	2 cut(s)	62, 63
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	64, 407
BseDI	CCNNGG	2 cut(s)	62, 63
BseGI	GGATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	1 cut(s)	395
BseSI	GKGCMC	3 cut(s)	70, 347, 426
BseXI	GCAGC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	202, 282
BsmFI	GGGAC	1 cut(s)	143
Bsp119I	TTCGAA	2 cut(s)	333, 511
Bsp1286I	GDGCHC	4 cut(s)	70, 293, 347, 426
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	290, 423
BspPI	GGATC	1 cut(s)	302
BspT104I	TTCGAA	2 cut(s)	333, 511
BspT107I	GGYRCC	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	62, 63
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	64, 407
Bst4CI	ACNGT	1 cut(s)	134
BstBI	TTCGAA	2 cut(s)	333, 511
BstDEI	CTNAG	2 cut(s)	499, 518
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	202, 282
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 421
BstNI	CCWGG	2 cut(s)	64, 407
BstSCI	CCNGG	2 cut(s)	62, 405
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	3 cut(s)	70, 347, 426
BstV1I	GCAGC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	456
CaiI	CAGNNNCTG	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	2 cut(s)	291, 441
CviKI_1	RGCY	2 cut(s)	291, 441
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	499, 518
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DraI	TTTAAA	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	62, 405
EcoT38I	GRGCYC	1 cut(s)	293
FaeI	CATG	1 cut(s)	147
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	143
FauNDI	CATATG	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	48, 177
GluI	GCNGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	147
HinfI	GANTC	1 cut(s)	54
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	17, 187, 345
Hpy188I	TCNGA	3 cut(s)	34, 162, 483
Hpy188III	TCNNGA	5 cut(s)	177, 205, 281, 458, 473
Hpy8I	GTNNAC	3 cut(s)	17, 187, 345
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 421
HpyF3I	CTNAG	2 cut(s)	499, 518
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	288
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	48, 177
MaeII	ACGT	1 cut(s)	339
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	395
MhlI	GDGCHC	4 cut(s)	70, 293, 347, 426
MluCI	AATT	4 cut(s)	85, 168, 237, 503
MnlI	CCTC	3 cut(s)	247, 412, 474
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	2 cut(s)	89, 495
MslI	CAYNNNNRTG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	64, 407
MvaI	CCWGG	2 cut(s)	64, 407
MwoI	GCNNNNNNNGC	2 cut(s)	44, 421
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	2 cut(s)	290, 423
NspV	TTCGAA	2 cut(s)	333, 511
PasI	CCCWGGG	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	62, 405
PspGI	CCWGG	2 cut(s)	62, 405
PspN4I	GGNNCC	2 cut(s)	290, 423
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	89, 495
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	64, 407
SduI	GDGCHC	4 cut(s)	70, 293, 347, 426
SetI	ASST	5 cut(s)	342, 376, 382, 423, 466
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	2 cut(s)	333, 511
SmiI	ATTTAAAT	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	4 cut(s)	85, 168, 237, 503
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	2 cut(s)	48, 177
StyD4I	CCNGG	2 cut(s)	62, 405
SwaI	ATTTAAAT	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	4 cut(s)	192, 333, 457, 511
TasI	AATT	4 cut(s)	85, 168, 237, 503
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	89, 495
Tru9I	TTAA	2 cut(s)	89, 495
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	333
VneI	GTGCAC	1 cut(s)	343
XapI	RAATTY	2 cut(s)	85, 503
XbaI	TCTAGA	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	2 cut(s)	48, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.