Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Forward (+)

80268343 .. 80274132

Gene Structure 5790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTCCCCTACAACTTTACCGAGTTCATTGATGACCTGACATATCAAGTCAAGAATATGAGCAGGGTTAAGTTTATGATGGGCCTTTTTGAAAATCCCTTGGTTGATCTCAGCCTAGCCGCCGGTCAGCTAGGAAACAAGAACGGTCTTGTGGCTCACAAAGATGGGAAGCTCATTGGCACCCAGGCACTTCGATCAATTGCTATTGCTAATGACCATGAATATGTATTTCTGAGAATGGTCTTGTGGCTCACAAAGATGAGAAGCTCATTGGCACCTAGATTCGGGGTTAAGGTTCCTGAACTCAATGGAAAGCTTACTGGTATGGTCCATATGGACACGGTTAGTGCTAGAATAGACATGATCATGGTCCCCTACAACTTTACCGAGTTCATTGATGACCTGACATATCAAGTCAACAATAATATCATCCCCATGAGCAGGATTGACGATGCTGTGAAGAGAATTTTGAGGGTTAAGTTTATCATGGGCCTTTTTGAAAATCCCTTGGCTGATCTCAGCCTAGCCGCGGCCAGTACCACAATCCTTGATGCGGTGAAAACTACAGCTGATCCTAGCACTCAAGTTGTCTACAACGAGAACCCTGATGCGAACTTTGTGAAGTCCAACGTGGCTTCTATTGCTGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

218

Amino Acids

24.11

Weight (kDa)

6.29

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 274
AccI	GTMKAC	1 cut(s)	591
AccII	CGCG	1 cut(s)	530
AciI	CCGC	4 cut(s)	120, 528, 530, 554
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	465
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	4 cut(s)	284, 441, 529, 553
AgsI	TTSAA	2 cut(s)	92, 500
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	6 cut(s)	130, 172, 267, 316, 569, 651
AluI	AGCT	6 cut(s)	130, 172, 267, 316, 569, 651
AlwI	GGATC	1 cut(s)	566
AoxI	GGCC	3 cut(s)	82, 490, 531
ApoI	RAATTY	1 cut(s)	465
AspS9I	GGNCC	5 cut(s)	4, 82, 328, 370, 490
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	3 cut(s)	4, 328, 370
BanI	GGYRCC	2 cut(s)	179, 274
BccI	CCATC	2 cut(s)	73, 158
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	1 cut(s)	363
BfaI	CTAG	6 cut(s)	116, 131, 279, 351, 524, 576
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	3 cut(s)	120, 528, 531
BlsI	GCNGC	3 cut(s)	121, 529, 532
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	3 cut(s)	4, 328, 370
BmgT120I	GGNCC	5 cut(s)	4, 82, 328, 370, 490
BmiI	GGNNCC	5 cut(s)	6, 181, 276, 297, 372
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	442, 541, 598
BpuEI	CTTGAG	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	99, 183, 507, 528
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 441, 529, 553
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	325, 534
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	4 cut(s)	99, 183, 507, 528
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	4 cut(s)	284, 441, 529, 553
BseMII	CTCAG	3 cut(s)	124, 224, 532
BseNI	ACTGG	2 cut(s)	325, 534
BseYI	CCCAGC	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	84, 492, 533
BshNI	GGYRCC	2 cut(s)	179, 274
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	4 cut(s)	284, 441, 529, 553
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	84, 492, 533
Bsp143I	GATC	5 cut(s)	106, 194, 363, 514, 571
BspACI	CCGC	4 cut(s)	120, 528, 530, 554
BspANI	GGCC	3 cut(s)	84, 492, 533
BspCNI	CTCAG	3 cut(s)	123, 225, 531
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	5 cut(s)	6, 181, 276, 297, 372
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	2 cut(s)	179, 274
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	325, 534
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	4 cut(s)	99, 183, 507, 528
BssMI	GATC	5 cut(s)	106, 194, 363, 514, 571
BssT1I	CCWWGG	2 cut(s)	99, 507
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	146, 343
Bst6I	CTCTTC	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	110, 233, 518
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	530
BstKTI	GATC	5 cut(s)	109, 197, 366, 517, 574
BstMBI	GATC	5 cut(s)	106, 194, 363, 514, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	84, 492, 533
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	5 cut(s)	4, 82, 328, 370, 490
Cfr42I	CCGCGG	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	537
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	5 cut(s)	218, 361, 367, 436, 487
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	3 cut(s)	110, 233, 518
DpnI	GATC	5 cut(s)	108, 196, 365, 516, 573
DpnII	GATC	5 cut(s)	106, 194, 363, 514, 571
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	99, 507
Eco47I	GGWCC	3 cut(s)	4, 328, 370
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	2 cut(s)	99, 507
ErhI	CCWWGG	2 cut(s)	99, 507
FaeI	CATG	5 cut(s)	221, 364, 370, 439, 490
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	5 cut(s)	217, 360, 366, 435, 486
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	120, 528, 531
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	3 cut(s)	120, 528, 531
FspBI	CTAG	6 cut(s)	116, 131, 279, 351, 524, 576
GluI	GCNGC	3 cut(s)	120, 528, 531
GsaI	CCCAGC	1 cut(s)	648
HaeIII	GGCC	3 cut(s)	84, 492, 533
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	5 cut(s)	221, 364, 370, 439, 490
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	418, 592
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	52, 299
Hpy8I	GTNNAC	2 cut(s)	418, 592
HpyCH4III	ACNGT	2 cut(s)	146, 343
HpyCH4IV	ACGT	1 cut(s)	630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	3 cut(s)	110, 233, 518
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	5 cut(s)	221, 364, 370, 439, 490
Ksp22I	TGATCA	1 cut(s)	363
KspI	CCGCGG	1 cut(s)	531
Kzo9I	GATC	5 cut(s)	106, 194, 363, 514, 571
LmnI	GCTCC	1 cut(s)	648
LweI	GCATC	3 cut(s)	442, 541, 598
MaeI	CTAG	6 cut(s)	116, 131, 279, 351, 524, 576
MaeII	ACGT	1 cut(s)	630
MalI	GATC	5 cut(s)	108, 196, 365, 516, 573
MboI	GATC	5 cut(s)	106, 194, 363, 514, 571
MboII	GAAGA	1 cut(s)	472
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	2 cut(s)	198, 465
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	1 cut(s)	465
MseI	TTAA	3 cut(s)	69, 291, 477
MslI	CAYNNNNRTG	5 cut(s)	162, 222, 257, 365, 434
MspA1I	CMGCKG	2 cut(s)	530, 569
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	641
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	5 cut(s)	106, 194, 363, 514, 571
NlaIII	CATG	5 cut(s)	221, 364, 370, 439, 490
NlaIV	GGNNCC	5 cut(s)	6, 181, 276, 297, 372
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	121, 529, 532
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	5 cut(s)	6, 181, 276, 297, 372
PspPI	GGNCC	5 cut(s)	4, 82, 328, 370, 490
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	5 cut(s)	162, 222, 257, 365, 434
SacII	CCGCGG	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	69, 291, 477
SatI	GCNGC	3 cut(s)	120, 528, 531
Sau3AI	GATC	5 cut(s)	106, 194, 363, 514, 571
Sau96I	GGNCC	5 cut(s)	4, 82, 328, 370, 490
ScrFI	CCNGG	1 cut(s)	185
SfaNI	GCATC	3 cut(s)	442, 541, 598
SfcI	CTRYAG	1 cut(s)	564
Sfr303I	CCGCGG	1 cut(s)	531
SgrBI	CCGCGG	1 cut(s)	531
SinI	GGWCC	3 cut(s)	4, 328, 370
SmiMI	CAYNNNNRTG	5 cut(s)	162, 222, 257, 365, 434
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	2 cut(s)	198, 465
SsiI	CCGC	4 cut(s)	120, 528, 530, 554
SspMI	CTAG	6 cut(s)	116, 131, 279, 351, 524, 576
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	2 cut(s)	99, 507
TaaI	ACNGT	2 cut(s)	146, 343
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	1 cut(s)	193
TasI	AATT	2 cut(s)	198, 465
TauI	GCSGC	3 cut(s)	122, 530, 533
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	3 cut(s)	69, 291, 477
Tru9I	TTAA	3 cut(s)	69, 291, 477
TspDTI	ATGAA	3 cut(s)	16, 234, 382
VpaK11BI	GGWCC	3 cut(s)	4, 328, 370
XapI	RAATTY	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	6 cut(s)	116, 131, 279, 351, 524, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.