Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000252.1

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Reverse (-)

172946 .. 173831

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000252.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgcggaagacgaagtccgacgtcgcctccgccgaagctcttcaggacactgaggatctccaactccggcgaattcacaggcatcaacattgttggacgtcaaaaagggcaacaaacccccgaatcattcgcgaatctcagaagcatctgttttttactatgcacaaagatatgagcgagattctgggcaggaatagattgggggttaaggttcctgaactcaatggaaagcttactggtatggtccgtatggacacggttagagctagaatagacatgatcatggtcccgtacaactttaccgagttcattgatgacctgacatatcaagtcaacaataatatcatccccatgagcaggattgacgatgctgtgaagagaattttgagggttaagtttatcgtgggcctttttgaaaatcccttcgctgatctcagcctagccgcggccagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

151

Amino Acids

17.53

Weight (kDa)

9.77

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	24, 101
AccII	CGCG	2 cut(s)	132, 446
AciI	CCGC	4 cut(s)	4, 30, 444, 446
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	72, 381
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	2 cut(s)	21, 98
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	357, 445
AgsI	TTSAA	1 cut(s)	416
AluBI	AGCT	4 cut(s)	38, 232, 266, 453
AluI	AGCT	4 cut(s)	38, 232, 266, 453
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	406, 447
ApoI	RAATTY	2 cut(s)	72, 381
Asp700I	GAANNNNTTC	1 cut(s)	39
AspS9I	GGNCC	3 cut(s)	244, 286, 406
AvaII	GGWCC	2 cut(s)	244, 286
BbsI	GAAGAC	1 cut(s)	14
BclI	TGATCA	1 cut(s)	279
BfaI	CTAG	3 cut(s)	267, 440, 454
BisI	GCNGC	2 cut(s)	444, 447
BlsI	GCNGC	2 cut(s)	445, 448
Bme18I	GGWCC	2 cut(s)	244, 286
BmgT120I	GGNCC	3 cut(s)	244, 286, 406
BmiI	GGNNCC	2 cut(s)	213, 288
BmsI	GCATC	3 cut(s)	91, 154, 358
BpiI	GAAGAC	1 cut(s)	14
BsaHI	GRCGYC	2 cut(s)	21, 98
BsaJI	CCNNGG	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 445
Bse1I	ACTGG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	357, 445
BseMII	CTCAG	3 cut(s)	42, 152, 448
BseNI	ACTGG	1 cut(s)	241
Bsh1236I	CGCG	2 cut(s)	132, 446
BshFI	GGCC	2 cut(s)	408, 449
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	357, 445
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	408, 449
Bsp143I	GATC	3 cut(s)	55, 279, 430
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	4 cut(s)	4, 30, 444, 446
BspANI	GGCC	2 cut(s)	408, 449
BspCNI	CTCAG	3 cut(s)	43, 151, 447
BspFNI	CGCG	2 cut(s)	132, 446
BspLI	GGNNCC	2 cut(s)	213, 288
BspPI	GGATC	1 cut(s)	63
BspQI	GCTCTTC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	3 cut(s)	55, 279, 430
BssNI	GRCGYC	2 cut(s)	21, 98
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	45, 371
BstACI	GRCGYC	2 cut(s)	21, 98
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	3 cut(s)	51, 138, 434
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	2 cut(s)	132, 446
BstKTI	GATC	3 cut(s)	58, 282, 433
BstMBI	GATC	3 cut(s)	55, 279, 430
BstUI	CGCG	2 cut(s)	132, 446
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	408, 449
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	48
BtuMI	TCGCGA	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	244, 286, 406
Cfr42I	CCGCGG	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	277, 283, 352
CviJI	RGCY	8 cut(s)	38, 232, 266, 408, 438, 443, 449, 453
CviKI_1	RGCY	8 cut(s)	38, 232, 266, 408, 438, 443, 449, 453
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	3 cut(s)	51, 138, 434
DpnI	GATC	3 cut(s)	57, 281, 432
DpnII	GATC	3 cut(s)	55, 279, 430
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	45, 371
EarI	CTCTTC	2 cut(s)	45, 371
EciI	GGCGGA	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	244, 286
Eco57I	CTGAAG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	72
FaeI	CATG	3 cut(s)	280, 286, 355
FaiI	YATR	8 cut(s)	161, 173, 242, 251, 278, 284, 325, 353
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	276, 282, 351
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	444, 447
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	444, 447
FspBI	CTAG	3 cut(s)	267, 440, 454
GluI	GCNGC	2 cut(s)	444, 447
HaeIII	GGCC	2 cut(s)	408, 449
HapII	CCGG	1 cut(s)	67
Hin1I	GRCGYC	2 cut(s)	21, 98
Hin1II	CATG	3 cut(s)	280, 286, 355
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	3 cut(s)	123, 134, 181
HpaII	CCGG	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	19, 141
Hpy188III	TCNNGA	3 cut(s)	44, 131, 215
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	21, 98
HpyCH4V	TGCA	1 cut(s)	163
HpyF3I	CTNAG	3 cut(s)	51, 138, 434
HpySE526I	ACGT	2 cut(s)	21, 98
Hsp92I	GRCGYC	2 cut(s)	21, 98
Hsp92II	CATG	3 cut(s)	280, 286, 355
Ksp22I	TGATCA	1 cut(s)	279
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	55, 279, 430
LguI	GCTCTTC	1 cut(s)	45
LpnPI	CCDG	9 cut(s)	29, 64, 80, 170, 175, 222, 228, 332, 343
LweI	GCATC	3 cut(s)	91, 154, 358
MaeI	CTAG	3 cut(s)	267, 440, 454
MaeII	ACGT	2 cut(s)	21, 98
MalI	GATC	3 cut(s)	57, 281, 432
MboI	GATC	3 cut(s)	55, 279, 430
MboII	GAAGA	3 cut(s)	19, 32, 388
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	2 cut(s)	72, 381
MmeI	TCCRAC	3 cut(s)	42, 74, 85
MnlI	CCTC	3 cut(s)	37, 46, 381
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	2 cut(s)	207, 393
MslI	CAYNNNNRTG	2 cut(s)	281, 350
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	67
MvnI	CGCG	2 cut(s)	132, 446
NdeII	GATC	3 cut(s)	55, 279, 430
NlaIII	CATG	3 cut(s)	280, 286, 355
NlaIV	GGNNCC	2 cut(s)	213, 288
NruI	TCGCGA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	123, 134, 181
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	445, 448
PspN4I	GGNNCC	2 cut(s)	213, 288
PspPI	GGNCC	3 cut(s)	244, 286, 406
PsuI	RGATCY	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	2 cut(s)	281, 350
SacII	CCGCGG	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	207, 393
SatI	GCNGC	2 cut(s)	444, 447
Sau3AI	GATC	3 cut(s)	55, 279, 430
Sau96I	GGNCC	3 cut(s)	244, 286, 406
SetI	ASST	8 cut(s)	24, 40, 101, 213, 234, 268, 321, 455
SfaNI	GCATC	3 cut(s)	91, 154, 358
Sfr303I	CCGCGG	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	244, 286
SmiMI	CAYNNNNRTG	2 cut(s)	281, 350
Sse9I	AATT	2 cut(s)	72, 381
SsiI	CCGC	4 cut(s)	4, 30, 444, 446
SspMI	CTAG	3 cut(s)	267, 440, 454
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	24, 101
TasI	AATT	2 cut(s)	72, 381
TauI	GCSGC	2 cut(s)	446, 449
TfiI	GAWTC	3 cut(s)	123, 134, 181
Tru1I	TTAA	2 cut(s)	207, 393
Tru9I	TTAA	2 cut(s)	207, 393
TscAI	CASTG	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	298
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	55
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	244, 286
XapI	RAATTY	2 cut(s)	72, 381
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	3 cut(s)	267, 440, 454
ZraI	GACGTC	2 cut(s)	22, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.