Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Forward (+)

80262509 .. 80265544

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCAAAACATCTGCAGGAGAAAGAAGAATGGCATCCATGGCGGTTCCTTGGCTTTACATCAGATTCATATAATCGATCGTCAAGCTAGACTGCCACAAGAGATTTACAACCCTTCGGTGCACAAGGATTATATTGAAGGGTTCAAAGATTTCTTTGCAGAATTATTTGGAGGCTTATATGAACCACTCCTCGACTTGCAATATTTAGACATCAAAGGATATGTGAATACTCATATGATCACTGAGGAACAAATGCTATTCTTGTCCTTGCACCCATATTTCGAAACAAATAATCGTGAAGCTGCTATGAATTTCATTCCATTGGCCCTCCAAACATTGCATTATTTAGATGGTGTGCTCTTGCCATATCCTATTCAATCAACTACGGTACTATTGTCGGCAAAAGCTAGCATTGGTATTGAGAAATCAATCTTGTTCTCCCTTGTTTGCTACTTCTTCTCATGGATAAGTCTATGGTTTCCTTTTGGAGATTTTGGCAATGGGGTTGATTTGGGTGTGTGGGAACAGCCTCATTTACAAGCAAAGGTTGAAATGGTTGTGACAGAAGGAGATGAAGAAGGGAAGAAGACTACAGCAATGGTGAGGGAGATTGAGGCTTCTGAGCTTGTTCTTGGACTCCATAATCACAGCTTTCTTTACAAGTTGGCAATGGCGCAAGGCAACAATACTGCAAACAACTTCATGAATTGCAGAGTCCGACCCATCAAGCAATCATCTTCTTCACAATTGAGGATCAACAAGGCCAATGCTCCTACTGATAAAAAAGTTTTCAATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

267

Amino Acids

30.29

Weight (kDa)

6.36

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	761
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	1 cut(s)	390
AgsI	TTSAA	5 cut(s)	137, 145, 377, 551, 793
AluBI	AGCT	5 cut(s)	86, 302, 407, 625, 651
AluI	AGCT	5 cut(s)	86, 302, 407, 625, 651
Alw21I	GWGCWC	2 cut(s)	123, 360
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	761
AoxI	GGCC	2 cut(s)	324, 762
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	613
AsuII	TTCGAA	1 cut(s)	282
AsuNHI	GCTAGC	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	123
BaeI	ACNNNNGTAYC	2 cut(s)	380, 413
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	123, 360
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	344, 731
BclI	TGATCA	1 cut(s)	237
BfaI	CTAG	2 cut(s)	87, 408
BfmI	CTRYAG	2 cut(s)	13, 591
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	42
BmtI	GCTAGC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	593
Bpu14I	TTCGAA	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	37, 48
Bse3DI	GCAATG	4 cut(s)	335, 505, 603, 675
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	37, 48
BseGI	GGATG	1 cut(s)	33
BseMI	GCAATG	4 cut(s)	335, 505, 603, 675
BseMII	CTCAG	2 cut(s)	234, 612
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	326, 764
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	123, 360
BsnI	GGCC	2 cut(s)	326, 764
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	123, 360
Bsp143I	GATC	3 cut(s)	76, 237, 753
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	326, 764
BspCNI	CTCAG	2 cut(s)	235, 613
BspDI	ATCGAT	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	17
BspOI	GCTAGC	1 cut(s)	411
BspPI	GGATC	1 cut(s)	761
BspT104I	TTCGAA	1 cut(s)	282
BsrDI	GCAATG	4 cut(s)	335, 505, 603, 675
BssECI	CCNNGG	2 cut(s)	37, 48
BssMI	GATC	3 cut(s)	76, 237, 753
BssT1I	CCWWGG	2 cut(s)	37, 48
Bst4CI	ACNGT	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	243, 621
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	3 cut(s)	79, 240, 756
BstMBI	GATC	3 cut(s)	76, 237, 753
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstSFI	CTRYAG	2 cut(s)	13, 591
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	593
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	326, 764
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	3 cut(s)	38, 462, 703
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	243, 621
DpnI	GATC	3 cut(s)	78, 239, 755
DpnII	GATC	3 cut(s)	76, 237, 753
Eco130I	CCWWGG	2 cut(s)	37, 48
EcoT14I	CCWWGG	2 cut(s)	37, 48
ErhI	CCWWGG	2 cut(s)	37, 48
FaeI	CATG	3 cut(s)	41, 465, 706
FatI	CATG	3 cut(s)	37, 461, 702
FauNDI	CATATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	87, 408
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	326, 764
HhaI	GCGC	1 cut(s)	676
Hin1II	CATG	3 cut(s)	41, 465, 706
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HinfI	GANTC	3 cut(s)	64, 636, 714
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	63, 622, 719
Hpy188III	TCNNGA	2 cut(s)	296, 703
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	4 cut(s)	123, 131, 560, 572
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	9 cut(s)	4, 15, 121, 158, 199, 271, 340, 692, 711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	2 cut(s)	243, 621
Hsp92II	CATG	3 cut(s)	41, 465, 706
HspAI	GCGC	1 cut(s)	674
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	76, 237, 753
LmnI	GCTCC	1 cut(s)	775
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	2 cut(s)	87, 408
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	3 cut(s)	78, 239, 755
MboI	GATC	3 cut(s)	76, 237, 753
MboII	GAAGA	7 cut(s)	37, 448, 587, 595, 598, 729, 732
MfeI	CAATTG	1 cut(s)	746
MhlI	GDGCHC	2 cut(s)	123, 360
MluCI	AATT	4 cut(s)	161, 310, 706, 746
MlyI	GAGTC	2 cut(s)	630, 723
MmeI	TCCRAC	1 cut(s)	742
MnlI	CCTC	8 cut(s)	164, 200, 238, 338, 540, 597, 607, 744
MunI	CAATTG	1 cut(s)	746
MwoI	GCNNNNNNNGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	37
NdeI	CATATG	1 cut(s)	234
NdeII	GATC	3 cut(s)	76, 237, 753
NheI	GCTAGC	1 cut(s)	407
NlaIII	CATG	3 cut(s)	41, 465, 706
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	559
NspV	TTCGAA	1 cut(s)	282
PagI	TCATGA	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	304
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	2 cut(s)	630, 722
PpsI	GAGTC	2 cut(s)	630, 722
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	17
PvuI	CGATCG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	76, 237, 753
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	2 cut(s)	630, 723
SduI	GDGCHC	2 cut(s)	123, 360
SetI	ASST	7 cut(s)	88, 304, 409, 549, 627, 653, 800
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	2 cut(s)	13, 591
SfuI	TTCGAA	1 cut(s)	282
Sse9I	AATT	4 cut(s)	161, 310, 706, 746
SsiI	CCGC	1 cut(s)	42
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	2 cut(s)	87, 408
StyI	CCWWGG	2 cut(s)	37, 48
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	3 cut(s)	75, 192, 282
TasI	AATT	4 cut(s)	161, 310, 706, 746
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	7 cut(s)	56, 195, 304, 323, 588, 691, 719
TspRI	CASTG	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	310
XspI	CTAG	2 cut(s)	87, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.