Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008123

Physical Location & Seq

Genomic Coordinates Forward (+)

80146092 .. 80147983

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCTATCTTTATTCTGGAAGATGGTCTTCCTGCACTCTTCTATCTTGTTCTATGCGCACTCAGTGTTATGAATAGATTCGGGGTTAAGGTTCCTGAACTCAATGGAAAGCTTACTGGTATGGTCCATATGGACACGGTTAGTGCTAGAATAGACATGATCATGGTCCCCTACAACTTTACCGAGTTCATTGATGACCTGACATATCAAGTCAACAATAATATCATCCCCATGAGCAGGATTGACGATGCTGTGAAGAGAATTTTGAGGGTTAAGTTTATCATGGGCCTTTTTGAAAATCCCTTGGCTGATCTCAGCCTAGCTGCGGCCAGTACCATAATCCTTGATGCGGTGAAAACTACAGCTGATCCTAGCACTCAAGTTGTCTACAACGAGAACCCTGATGCGAACTTTGTGAAGTCCAACGTGGCTTCTATTGCTGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005623 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0044042 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

150

Amino Acids

16.39

Weight (kDa)

4.67

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008123)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32780
pyrus_communis	pycom02g22120 pycom02g22160 pycom11g06830
rosa_laevigata	RLG00000022033 RLG00000022035 RLG00000022037 RLG00000022039 RLG00000022041 RLG00000022043 RLG00000022045 RLG00000022047 RLG00000022048 RLG00000022050 RLG00000022061 RLG00000022081
rosa_multiflora	Rmu_ssc0000252.1_g000030
rosa_roxburghii	Rroxscaffold_1G00032230 Rroxscaffold_2G00080370
rosa_samantha	Rh2BG641200 Rh2BG641300 Rh2DG652100 Rh2DG652200
rosa_wichuraiana	Rw2G052260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	2 cut(s)	326, 350
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	3 cut(s)	237, 325, 349
AgsI	TTSAA	1 cut(s)	296
AluBI	AGCT	4 cut(s)	112, 323, 365, 447
AluI	AGCT	4 cut(s)	112, 323, 365, 447
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	2 cut(s)	286, 327
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	124, 166, 286
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	124, 166
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	17
BclI	TGATCA	1 cut(s)	159
BfaI	CTAG	3 cut(s)	147, 320, 372
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	2 cut(s)	324, 327
BlsI	GCNGC	2 cut(s)	325, 328
Bme18I	GGWCC	2 cut(s)	124, 166
BmgT120I	GGNCC	3 cut(s)	124, 166, 286
BmiI	GGNNCC	2 cut(s)	93, 168
BmsI	GCATC	3 cut(s)	238, 337, 394
BpiI	GAAGAC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 325, 349
Bse1I	ACTGG	2 cut(s)	121, 330
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	237, 325, 349
BseMII	CTCAG	2 cut(s)	76, 328
BseNI	ACTGG	2 cut(s)	121, 330
BseXI	GCAGC	1 cut(s)	310
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	288, 329
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	237, 325, 349
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	288, 329
Bsp143I	GATC	3 cut(s)	159, 310, 367
BspACI	CCGC	2 cut(s)	326, 350
BspANI	GGCC	2 cut(s)	288, 329
BspCNI	CTCAG	2 cut(s)	75, 327
BspLI	GGNNCC	2 cut(s)	93, 168
BspPI	GGATC	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	121, 330
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	3 cut(s)	159, 310, 367
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	44, 251
BstDEI	CTNAG	2 cut(s)	62, 314
BstF5I	GGATG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	162, 313, 370
BstMBI	GATC	3 cut(s)	159, 310, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	288, 329
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	3 cut(s)	124, 166, 286
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	4 cut(s)	157, 163, 232, 283
CviJI	RGCY	9 cut(s)	112, 288, 308, 318, 323, 329, 365, 431, 447
CviKI_1	RGCY	9 cut(s)	112, 288, 308, 318, 323, 329, 365, 431, 447
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	62, 314
DpnI	GATC	3 cut(s)	161, 312, 369
DpnII	GATC	3 cut(s)	159, 310, 367
DraIII	CACNNNGTG	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	44, 251
EarI	CTCTTC	2 cut(s)	44, 251
Eco130I	CCWWGG	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	124, 166
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	160, 166, 235, 286
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	4 cut(s)	156, 162, 231, 282
FauNDI	CATATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	324, 327
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	324, 327
FspAI	RTGCGCAY	1 cut(s)	58
FspBI	CTAG	3 cut(s)	147, 320, 372
FspI	TGCGCA	1 cut(s)	58
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	324, 327
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	288, 329
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	160, 166, 235, 286
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	214, 388
Hpy188III	TCNNGA	2 cut(s)	17, 95
Hpy8I	GTNNAC	2 cut(s)	214, 388
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	62, 314
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	160, 166, 235, 286
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	159, 310, 367
LmnI	GCTCC	1 cut(s)	444
LpnPI	CCDG	9 cut(s)	2, 45, 102, 108, 212, 223, 343, 414, 426
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	3 cut(s)	238, 337, 394
MaeI	CTAG	3 cut(s)	147, 320, 372
MaeII	ACGT	1 cut(s)	426
MalI	GATC	3 cut(s)	161, 312, 369
MboI	GATC	3 cut(s)	159, 310, 367
MboII	GAAGA	4 cut(s)	20, 31, 32, 268
MluCI	AATT	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	87, 273
MslI	CAYNNNNRTG	2 cut(s)	161, 230
MspA1I	CMGCKG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	3 cut(s)	159, 310, 367
NlaIII	CATG	4 cut(s)	160, 166, 235, 286
NlaIV	GGNNCC	2 cut(s)	93, 168
NsbI	TGCGCA	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	325, 328
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	93, 168
PspPI	GGNCC	3 cut(s)	124, 166, 286
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	2 cut(s)	161, 230
SaqAI	TTAA	2 cut(s)	87, 273
SatI	GCNGC	2 cut(s)	324, 327
Sau3AI	GATC	3 cut(s)	159, 310, 367
Sau96I	GGNCC	3 cut(s)	124, 166, 286
SetI	ASST	7 cut(s)	93, 114, 201, 325, 367, 429, 449
SfaNI	GCATC	3 cut(s)	238, 337, 394
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	124, 166
SmiMI	CAYNNNNRTG	2 cut(s)	161, 230
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	2 cut(s)	326, 350
SspMI	CTAG	3 cut(s)	147, 320, 372
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	429
TasI	AATT	1 cut(s)	261
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	87, 273
Tru9I	TTAA	2 cut(s)	87, 273
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	86, 178
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	124, 166
XapI	RAATTY	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	3 cut(s)	147, 320, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.