RLG00000022081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008123
Physical Location & Seq
Reverse (-)
80740929 .. 80742314
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022081

Sequence Viewer

Length: 951 bp
ATGGACCTGAAAAAGATTCTTACAGTAAACGTCATGCAAAGCATCTGTTGGAGAATGAAGAATGGCATTTATGGCGGTTCCTTGGCTTTACATGAGATTGATATGATCGGTTGTAAAGCTATACTACCAGAGCCGGATTACAACCCTTCAGTGCACAAGGATTACATCGAAGAATACAAGGACTTCTTTAAAAAATTCTTTGGAAGCCGCAATGAACCACTTCACGACTGGCAATATTTAGACATCAAGAAATATGTGAAACACCACGTGACCAGAGAGGAACATGTGTCGCTTTTGCGTTTACACCCATATTTTTTAGATGCTGCTACTGCCGAAGCATTCGTTCCAGGGGCACTCCAAAGACTGCAGAATTTAAATAATAAACCCTTGCCATATCCTATTCAATCAAAGTTGCACGGTTATGACAGGTGGCAAGAGATTTATCGGACTGTACTTCCTTTCAGGAAAGTTGACATCGAAAGGTCTATTCGAAGACTTGATGACGGTGTTTACAAGGATGTGATTATGTCCATGTATAAGGATTATAAAGCAAAAGGCAAGCCGAATGAGGACAGAAAAGCAAAAGGCAAGTCAAAATGCAAGTCTCGTGACTGGTGTCCAATAAACAATAACGATCGCATAGATGAACTAATATTCTTCATACCTGAAGCTGCAGATTTCTACTCAGTCTTATGCCAAGCGTTGCAAGAGGTGCCCACCGAAATGTTTTATTTTTTCTGGTTGTATCAAGAACCTCCAAGTGAAGACTTTCCCATTCATGTGATTACCTTAAACTTTGTTGAAACCCTGAGTATAAACAAGTACCAACGTGCGTATGCATGCAGCCATGCATATCTTGACATTAATTGGGTTATTCACGTTCAAACTATGTTGATGTCTAACAAATGGCTTTTCACAGGAGCTAGCGTCTCGGACTGGGAAGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

37.36

Weight (kDa)

7.16

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AccB1I GGYRCC 1 cut(s) 712
AciI CCGC 2 cut(s) 75, 208
AcsI RAATTY 2 cut(s) 194, 370
AcuI CTGAAG 2 cut(s) 132, 687
AcvI CACGTG 1 cut(s) 268
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 2 cut(s) 453, 824
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 3 cut(s) 404, 803, 884
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 3 cut(s) 119, 671, 923
AluI AGCT 3 cut(s) 119, 671, 923
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 609, 934
Alw44I GTGCAC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 3 cut(s) 323, 671, 843
ApoI RAATTY 2 cut(s) 194, 370
ArsI GACNNNNNNTTYG 4 cut(s) 575, 587, 607, 619
AseI ATTAAT 1 cut(s) 864
Asp700I GAANNNNTTC 2 cut(s) 219, 768
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 490
AsuNHI GCTAGC 1 cut(s) 923
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 3 cut(s) 156, 355, 717
BanI GGYRCC 1 cut(s) 712
BauI CACGAG 1 cut(s) 606
BbrPI CACGTG 1 cut(s) 268
BbsI GAAGAC 2 cut(s) 499, 771
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 310, 658, 855
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 609, 934
BfaI CTAG 1 cut(s) 924
BfmI CTRYAG 2 cut(s) 365, 672
BisI GCNGC 4 cut(s) 208, 324, 672, 844
BlsI GCNGC 4 cut(s) 209, 325, 673, 845
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 79, 714
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 2 cut(s) 51, 310
BmtI GCTAGC 1 cut(s) 927
BmuI ACTGGG 1 cut(s) 946
BoxI GACNNNNGTC 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 499, 771
Bpu14I TTCGAA 1 cut(s) 490
BsaAI YACGTR 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 81, 347
BsaXI ACNNNNNCTCC 2 cut(s) 912, 942
Bse1I ACTGG 3 cut(s) 233, 617, 941
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 81, 347
BseGI GGATG 1 cut(s) 523
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 699, 800
BseNI ACTGG 3 cut(s) 233, 617, 941
BseSI GKGCMC 3 cut(s) 156, 355, 717
BseXI GCAGC 3 cut(s) 310, 658, 855
Bsh1285I CGRYCG 1 cut(s) 637
BshNI GGYRCC 1 cut(s) 712
BsiEI CGRYCG 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 609, 934
BsmBI CGTCTC 1 cut(s) 934
BsmI GAATGC 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 490
Bsp1286I GDGCHC 3 cut(s) 156, 355, 717
Bsp143I GATC 2 cut(s) 105, 634
BspACI CCGC 2 cut(s) 75, 208
BspCNI CTCAG 2 cut(s) 698, 801
BspLI GGNNCC 2 cut(s) 79, 714
BspMAI CTGCAG 2 cut(s) 369, 676
BspOI GCTAGC 1 cut(s) 927
BspT104I TTCGAA 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 3 cut(s) 233, 617, 941
BssECI CCNNGG 2 cut(s) 81, 347
BssMI GATC 2 cut(s) 105, 634
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 4 cut(s) 25, 419, 451, 506
BstAPI GCANNNNNTGC 1 cut(s) 712
BstBAI YACGTR 1 cut(s) 268
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 3 cut(s) 560, 841, 925
BstDEI CTNAG 2 cut(s) 685, 809
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 2 cut(s) 108, 637
BstMAI GTCTC 2 cut(s) 609, 934
BstMBI GATC 2 cut(s) 105, 634
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 3 cut(s) 72, 329, 712
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 2 cut(s) 287, 843
BstPAI GACNNNNGTC 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 2 cut(s) 365, 672
BstSLI GKGCMC 3 cut(s) 156, 355, 717
BstV1I GCAGC 3 cut(s) 310, 658, 855
BstV2I GAAGAC 2 cut(s) 499, 771
BtsCI GGATG 1 cut(s) 523
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 560, 841, 925
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 916
Csp6I GTAC 2 cut(s) 452, 823
CviAII CATG 7 cut(s) 34, 92, 284, 532, 779, 840, 848
CviQI GTAC 2 cut(s) 452, 823
DdeI CTNAG 2 cut(s) 685, 809
DpnI GATC 2 cut(s) 107, 636
DpnII GATC 2 cut(s) 105, 634
DraI TTTAAA 2 cut(s) 190, 375
DraIII CACNNNGTG 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 132, 687
Eco72I CACGTG 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 2 cut(s) 841, 853
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 934
FaeI CATG 7 cut(s) 37, 95, 287, 535, 782, 843, 851
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 7 cut(s) 33, 91, 283, 531, 778, 839, 847
Fnu4HI GCNGC 4 cut(s) 208, 324, 672, 844
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 4 cut(s) 208, 324, 672, 844
FspBI CTAG 1 cut(s) 924
GluI GCNGC 4 cut(s) 208, 324, 672, 844
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 916
Hin1II CATG 7 cut(s) 37, 95, 287, 535, 782, 843, 851
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 1 cut(s) 16
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 5 cut(s) 28, 154, 302, 472, 511
Hpy188I TCNGA 2 cut(s) 447, 934
Hpy188III TCNNGA 6 cut(s) 224, 247, 463, 608, 749, 857
Hpy8I GTNNAC 5 cut(s) 28, 154, 302, 472, 511
HpyAV CCTTC 2 cut(s) 156, 935
HpyCH4III ACNGT 4 cut(s) 25, 419, 451, 506
HpyCH4IV ACGT 4 cut(s) 30, 267, 829, 879
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 329, 712
HpyF3I CTNAG 2 cut(s) 685, 809
HpySE526I ACGT 4 cut(s) 30, 267, 829, 879
Hsp92II CATG 7 cut(s) 37, 95, 287, 535, 782, 843, 851
Kzo9I GATC 2 cut(s) 105, 634
LmnI GCTCC 1 cut(s) 920
Lsp1109I GCAGC 3 cut(s) 310, 658, 855
LweI GCATC 2 cut(s) 51, 310
MaeI CTAG 1 cut(s) 924
MaeII ACGT 4 cut(s) 30, 267, 829, 879
MaeIII GTNAC 2 cut(s) 268, 608
MalI GATC 2 cut(s) 107, 636
MboI GATC 2 cut(s) 105, 634
MboII GAAGA 5 cut(s) 70, 182, 504, 649, 776
MhlI GDGCHC 3 cut(s) 156, 355, 717
MluCI AATT 3 cut(s) 194, 370, 865
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 4 cut(s) 271, 562, 703, 765
Mph1103I ATGCAT 2 cut(s) 841, 853
MroXI GAANNNNTTC 2 cut(s) 219, 768
MseI TTAA 4 cut(s) 189, 374, 791, 864
MslI CAYNNNNRTG 3 cut(s) 420, 722, 779
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 3 cut(s) 72, 329, 712
NdeII GATC 2 cut(s) 105, 634
NheI GCTAGC 1 cut(s) 923
NlaIII CATG 7 cut(s) 37, 95, 287, 535, 782, 843, 851
NlaIV GGNNCC 2 cut(s) 79, 714
NmuCI GTSAC 2 cut(s) 268, 608
NsiI ATGCAT 2 cut(s) 841, 853
NspI RCATGY 2 cut(s) 287, 843
NspV TTCGAA 1 cut(s) 490
PaeI GCATGC 1 cut(s) 843
PciI ACATGT 1 cut(s) 283
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 2 cut(s) 219, 768
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 4 cut(s) 209, 325, 673, 845
Ple19I CGATCG 1 cut(s) 637
PmaCI CACGTG 1 cut(s) 268
PmlI CACGTG 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 268
PscI ACATGT 1 cut(s) 283
PshAI GACNNNNGTC 1 cut(s) 615
PshBI ATTAAT 1 cut(s) 864
PsiI TTATAA 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 346
PspCI CACGTG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 79, 714
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 2 cut(s) 369, 676
PvuI CGATCG 1 cut(s) 637
RsaI GTAC 2 cut(s) 453, 824
RsaNI GTAC 2 cut(s) 452, 823
RseI CAYNNNNRTG 3 cut(s) 420, 722, 779
SaqAI TTAA 4 cut(s) 189, 374, 791, 864
SatI GCNGC 4 cut(s) 208, 324, 672, 844
Sau3AI GATC 2 cut(s) 105, 634
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 3 cut(s) 156, 355, 717
SfaNI GCATC 2 cut(s) 51, 310
SfcI CTRYAG 2 cut(s) 365, 672
SfuI TTCGAA 1 cut(s) 490
SinI GGWCC 1 cut(s) 4
SmiI ATTTAAAT 1 cut(s) 375
SmiMI CAYNNNNRTG 3 cut(s) 420, 722, 779
SphI GCATGC 1 cut(s) 843
Sse9I AATT 3 cut(s) 194, 370, 865
SsiI CCGC 2 cut(s) 75, 208
SspI AATATT 2 cut(s) 236, 654
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 81
SwaI ATTTAAAT 1 cut(s) 375
TaaI ACNGT 4 cut(s) 25, 419, 451, 506
TaiI ACGT 4 cut(s) 33, 270, 832, 882
TaqI TCGA 3 cut(s) 168, 477, 490
TasI AATT 3 cut(s) 194, 370, 865
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 4 cut(s) 189, 374, 791, 864
Tru9I TTAA 4 cut(s) 189, 374, 791, 864
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 2 cut(s) 268, 608
TseI GCWGC 3 cut(s) 323, 671, 843
Tsp45I GTSAC 2 cut(s) 268, 608
TspDTI ATGAA 5 cut(s) 71, 228, 649, 660, 767
TspRI CASTG 1 cut(s) 156
VneI GTGCAC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 864
XapI RAATTY 2 cut(s) 194, 370
XceI RCATGY 2 cut(s) 287, 843
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XmnI GAANNNNTTC 2 cut(s) 219, 768
XspI CTAG 1 cut(s) 924
Zsp2I ATGCAT 2 cut(s) 841, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.