Rh2DG652200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008123
Physical Location & Seq
Reverse (-)
87777071 .. 87777554
484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG652200.1

Sequence Viewer

Length: 378 bp
ATGTCTTGGCTGCAGGCTAGGTTAGTTCGCTGCTATGAAGTACATCGTTTAAATCCTACAGTCAATTCTTTTAAACCCAACCGTTCTTTTTCTACATTCGATTCTTCTAGACGCACTCTAGAGAGTCTAAGAGAATCTTCCCGAATAGACCTGAAAAAGATTTTTGCAGAAAACGTCATGCAAAGCATATGCTGGAGAATGAAGAATGGCATCGATGGCGGTTCCTTGGCTTTACATGAGATTGATATCATCAATGGTAATGCTAGACTACCACAACCGGATGATTACAACCCTTCAGTGCACAAGAAGTACATTGAAGCATACAAAGAATTCTTTGTAGAATTATTTGGAAGCTGCAATGAACCACTCCACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.52

Weight (kDa)

8.49

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 42, 311
AgsI TTSAA 1 cut(s) 317
AluBI AGCT 1 cut(s) 354
AluI AGCT 1 cut(s) 354
Alw21I GWGCWC 1 cut(s) 303
Alw44I GTGCAC 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 299
ApeKI GCWGC 3 cut(s) 10, 30, 354
ApoI RAATTY 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 17, 341
BccI CCATC 1 cut(s) 209
BfaI CTAG 4 cut(s) 18, 108, 119, 264
BfmI CTRYAG 2 cut(s) 11, 57
BisI GCNGC 3 cut(s) 11, 31, 355
BlsI GCNGC 3 cut(s) 12, 32, 356
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 214
Bsa29I ATCGAT 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 286
BseJI GATNNNNATC 1 cut(s) 245
BseMI GCAATG 1 cut(s) 364
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 2 cut(s) 17, 341
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 303
BspACI CCGC 1 cut(s) 219
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 223
BspMAI CTGCAG 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 61, 83
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstSFI CTRYAG 2 cut(s) 11, 57
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 17, 341
Bsu15I ATCGAT 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 15
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 1 cut(s) 120
Csp6I GTAC 2 cut(s) 41, 310
CviAII CATG 2 cut(s) 178, 236
CviJI RGCY 4 cut(s) 10, 17, 230, 354
CviKI_1 RGCY 4 cut(s) 10, 17, 230, 354
CviQI GTAC 2 cut(s) 41, 310
DdeI CTNAG 1 cut(s) 128
DraI TTTAAA 2 cut(s) 51, 73
Eco130I CCWWGG 1 cut(s) 225
Eco32I GATATC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 329
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 181, 239
FaiI YATR 6 cut(s) 36, 179, 188, 190, 237, 322
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FatI CATG 2 cut(s) 177, 235
FauNDI CATATG 1 cut(s) 188
Fnu4HI GCNGC 3 cut(s) 11, 31, 355
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 11, 31, 355
FspBI CTAG 4 cut(s) 18, 108, 119, 264
GluI GCNGC 3 cut(s) 11, 31, 355
GsuI CTGGAG 1 cut(s) 214
HapII CCGG 1 cut(s) 278
HgaI GACGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 181, 239
HinfI GANTC 3 cut(s) 101, 124, 134
HpaII CCGG 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 301
Hpy188III TCNNGA 3 cut(s) 108, 119, 141
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 2 cut(s) 61, 83
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 5 cut(s) 13, 167, 181, 301, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 2 cut(s) 181, 239
LpnPI CCDG 3 cut(s) 164, 178, 291
Lsp1109I GCAGC 2 cut(s) 17, 341
LweI GCATC 1 cut(s) 219
MaeI CTAG 4 cut(s) 18, 108, 119, 264
MaeII ACGT 1 cut(s) 174
MboII GAAGA 3 cut(s) 96, 129, 214
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 3 cut(s) 64, 329, 341
MlyI GAGTC 1 cut(s) 133
MseI TTAA 3 cut(s) 50, 72, 376
MspI CCGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeI CATATG 1 cut(s) 188
NlaIII CATG 2 cut(s) 181, 239
NlaIV GGNNCC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 101, 134
PkrI GCNGC 3 cut(s) 12, 32, 356
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 15
RsaI GTAC 2 cut(s) 42, 311
RsaNI GTAC 2 cut(s) 41, 310
SaqAI TTAA 3 cut(s) 50, 72, 376
SatI GCNGC 3 cut(s) 11, 31, 355
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 303
SetI ASST 4 cut(s) 23, 153, 177, 356
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 2 cut(s) 11, 57
Sse9I AATT 3 cut(s) 64, 329, 341
SsiI CCGC 1 cut(s) 219
SspMI CTAG 4 cut(s) 18, 108, 119, 264
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 61, 83
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 99, 213
TasI AATT 3 cut(s) 64, 329, 341
TatI WGTACW 2 cut(s) 40, 309
TfiI GAWTC 2 cut(s) 101, 134
Tru1I TTAA 3 cut(s) 50, 72, 376
Tru9I TTAA 3 cut(s) 50, 72, 376
TscAI CASTG 1 cut(s) 303
TseI GCWGC 3 cut(s) 10, 30, 354
TspDTI ATGAA 3 cut(s) 51, 215, 375
TspRI CASTG 1 cut(s) 303
VneI GTGCAC 1 cut(s) 299
XapI RAATTY 1 cut(s) 329
XbaI TCTAGA 2 cut(s) 107, 118
XspI CTAG 4 cut(s) 18, 108, 119, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.