Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Reverse (-)

25664568 .. 25667432

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGATGTGAACGACGCCGACGACGAAGAGTTTGGGTTCTCCAGAAACTACTTTCTGGCGAAGGAGCTCGGTGGATCCGCCGTGAAATCCCACTCTAAGCTCTCCGATATCAACATCGTCGACGAACAGGAACTGAGGGAAGCTTTATCTAATATTGAACCCAAACATGAGAAAGAGATCGAGGATTTGCTTAGCAGTTATAAGAGTTTGTACCCCAGATGGGCTTTTGATCTCAGGTGTGGTCTTGGACTTCTCATGTACGGGTTTGGGTCTAAAAAAACTTTGCTTGAAGATTTCGCTTCAACATCCCTGACTGAGTATTCGGCATTTGTTATCAATGGATATCTTCCAACAATAAATATAAAGCAGGTTTTGACATCCTTAGCTGAAGTTCTATGGGATCAATTGAAAACCAGACGTAGGACTCCTTCGAAGAGCTCATCCAAAGATCAACAACCCTATAGTTCTCGATCTGTGGAGGATCTTCTTGCATTTTTGGATGCGTCTGAGGATAGGACAAGTGAATTTCTTGTATGTGTAATCATTCACAACATTGATGGACCTGGATTAAGGGACTCTGAAACCCAACAGTATCTTGCAAGAGTTGCTTCGTGTCCTAATATTCGTATTGTGGCCTCTATCGACCATGTGAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACTCAATTCAACTGGTGCTGGTATCATGTTCCTACCTTTGCACCATACAAGATTGAAGGAACATTCTTTCCCTTGATTCTAGCTCATGGCAATACCACCCAAACGGCCAAAAATGCTGTTATAGTTTTACAGAGTTTGACACCCAATGCCCAGGGGGTGTTCAAAATTCTTGCAGAATATCAAATATCTCACTCTGAAGAAGAAGGGATGCCAATTGATAATCTGTTTGCAACCTGTCGAGAACGCTTCCTTGTTGGTAGCCGTCCTATGCTCAACTCCCATTTGACAGAATTCAAAGATCATGAGTTGGTCAAGACCAGAAGGCATTCTGATGGCCAGGATTGCTTGTACATTCCTCTTACAAGTGAGGCACTTGAAAAATTACTAGTGGAGATGACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

364

Amino Acids

41.24

Weight (kDa)

5.36

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA-like_ORC2	PF04084	59 - 239	2.1e-53	Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2	PF24882	293 - 352	3.9e-20	ORC2 WHD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	4 cut(s)	69, 82, 408, 489
AcoI	YGGCCR	2 cut(s)	792, 1021
AcsI	RAATTY	3 cut(s)	524, 852, 977
AcuI	CTGAAG	2 cut(s)	408, 903
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	3 cut(s)	212, 260, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	220, 420
AgsI	TTSAA	9 cut(s)	158, 290, 303, 409, 697, 743, 850, 982, 1064
AhlI	ACTAGT	1 cut(s)	1072
AjnI	CCWGG	3 cut(s)	562, 837, 1023
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
AluBI	AGCT	6 cut(s)	67, 100, 143, 386, 438, 770
AluI	AGCT	6 cut(s)	67, 100, 143, 386, 438, 770
Alw21I	GWGCWC	2 cut(s)	69, 440
AlwI	GGATC	4 cut(s)	69, 82, 408, 489
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	3 cut(s)	633, 792, 1021
ApoI	RAATTY	3 cut(s)	524, 852, 977
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 304, 336
Asp700I	GAANNNNTTC	1 cut(s)	1012
AspS9I	GGNCC	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	560
BalI	TGGCCA	1 cut(s)	1023
BamHI	GGATCC	1 cut(s)	74
BanII	GRGCYC	2 cut(s)	69, 440
BarI	GAAGNNNNNNTAC	2 cut(s)	412, 444
Bbv12I	GWGCWC	2 cut(s)	69, 440
BccI	CCATC	4 cut(s)	213, 551, 673, 1013
BceAI	ACGGC	3 cut(s)	65, 807, 933
BciT130I	CCWGG	3 cut(s)	564, 839, 1025
BcuI	ACTAGT	1 cut(s)	1072
BfaI	CTAG	2 cut(s)	767, 1073
BfmI	CTRYAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	358
BlpI	GCTNAGC	1 cut(s)	191
Bme1390I	CCNGG	3 cut(s)	564, 839, 1025
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	3 cut(s)	564, 839, 1025
BmsI	GCATC	2 cut(s)	490, 885
BpmI	CTGGAG	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	837, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 420
Bse1I	ACTGG	1 cut(s)	704
BseBI	CCWGG	3 cut(s)	564, 839, 1025
BseDI	CCNNGG	2 cut(s)	837, 838
BseGI	GGATG	6 cut(s)	10, 305, 377, 440, 505, 900
BseLI	CCNNNNNNNGG	2 cut(s)	220, 420
BseMII	CTCAG	4 cut(s)	125, 247, 306, 498
BseNI	ACTGG	1 cut(s)	704
BshFI	GGCC	3 cut(s)	635, 794, 1023
BsiHKAI	GWGCWC	2 cut(s)	69, 440
BslFI	GGGAC	2 cut(s)	587, 683
BslI	CCNNNNNNNGG	2 cut(s)	220, 420
BsmFI	GGGAC	2 cut(s)	587, 683
BsmI	GAATGC	2 cut(s)	658, 1012
BsnI	GGCC	3 cut(s)	635, 794, 1023
Bsp119I	TTCGAA	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	69, 440
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	8 cut(s)	74, 177, 229, 400, 448, 470, 481, 985
Bsp1720I	GCTNAGC	1 cut(s)	191
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	3 cut(s)	635, 794, 1023
BspCNI	CTCAG	4 cut(s)	126, 246, 307, 499
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	4 cut(s)	69, 82, 408, 489
BspQI	GCTCTTC	1 cut(s)	428
BspT104I	TTCGAA	1 cut(s)	431
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	704
BssECI	CCNNGG	2 cut(s)	837, 838
BssMI	GATC	8 cut(s)	74, 177, 229, 400, 448, 470, 481, 985
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	564, 839, 1025
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	2 cut(s)	21, 428
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	1035
BstBI	TTCGAA	1 cut(s)	431
BstDEI	CTNAG	8 cut(s)	96, 134, 191, 233, 315, 382, 507, 1086
BstF5I	GGATG	6 cut(s)	10, 305, 377, 440, 505, 900
BstKTI	GATC	8 cut(s)	77, 180, 232, 403, 451, 473, 484, 988
BstMBI	GATC	8 cut(s)	74, 177, 229, 400, 448, 470, 481, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	605, 800, 1029
BstNI	CCWGG	3 cut(s)	564, 839, 1025
BstSCI	CCNGG	3 cut(s)	562, 837, 1023
BstSFI	CTRYAG	1 cut(s)	460
BstX2I	RGATCY	2 cut(s)	74, 481
BstYI	RGATCY	2 cut(s)	74, 481
BsuRI	GGCC	3 cut(s)	635, 794, 1023
BtsCI	GGATG	6 cut(s)	10, 305, 377, 440, 505, 900
BveI	ACCTGC	1 cut(s)	358
CaiI	CAGNNNCTG	1 cut(s)	133
CciI	TCATGA	1 cut(s)	988
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	2 cut(s)	23, 492
Csp6I	GTAC	3 cut(s)	211, 259, 1036
CviAII	CATG	6 cut(s)	167, 256, 647, 713, 773, 989
CviQI	GTAC	3 cut(s)	211, 259, 1036
DdeI	CTNAG	8 cut(s)	96, 134, 191, 233, 315, 382, 507, 1086
DpnI	GATC	8 cut(s)	76, 179, 231, 402, 450, 472, 483, 987
DpnII	GATC	8 cut(s)	74, 177, 229, 400, 448, 470, 481, 985
EaeI	YGGCCR	2 cut(s)	792, 1021
Eam1104I	CTCTTC	2 cut(s)	21, 428
EarI	CTCTTC	2 cut(s)	21, 428
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	2 cut(s)	67, 438
Eco24I	GRGCYC	2 cut(s)	69, 440
Eco32I	GATATC	2 cut(s)	109, 344
Eco47I	GGWCC	1 cut(s)	560
Eco53kI	GAGCTC	2 cut(s)	67, 438
Eco57I	CTGAAG	2 cut(s)	408, 903
EcoICRI	GAGCTC	2 cut(s)	67, 438
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	3 cut(s)	562, 837, 1023
EcoRV	GATATC	2 cut(s)	109, 344
EcoT38I	GRGCYC	2 cut(s)	69, 440
FaeI	CATG	6 cut(s)	170, 259, 650, 716, 776, 992
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FaqI	GGGAC	2 cut(s)	587, 683
FatI	CATG	6 cut(s)	166, 255, 646, 712, 772, 988
FblI	GTMKAC	1 cut(s)	120
FokI	GGATG	6 cut(s)	17, 292, 364, 427, 512, 907
FriOI	GRGCYC	2 cut(s)	69, 440
FspBI	CTAG	2 cut(s)	767, 1073
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	3 cut(s)	635, 794, 1023
HgaI	GACGC	2 cut(s)	23, 492
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	6 cut(s)	170, 259, 650, 716, 776, 992
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	4 cut(s)	424, 575, 763, 1084
Hpy166II	GTNNAC	3 cut(s)	10, 121, 685
Hpy188I	TCNGA	5 cut(s)	106, 508, 580, 883, 1018
Hpy188III	TCNNGA	5 cut(s)	42, 468, 926, 989, 1000
Hpy8I	GTNNAC	3 cut(s)	10, 121, 685
Hpy99I	CGWCG	5 cut(s)	17, 23, 26, 122, 125
HpyAV	CCTTC	5 cut(s)	55, 438, 737, 884, 1002
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	6 cut(s)	491, 599, 656, 728, 860, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	605, 800, 1029
HpyF3I	CTNAG	8 cut(s)	96, 134, 191, 233, 315, 382, 507, 1086
HpySE526I	ACGT	1 cut(s)	418
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	6 cut(s)	170, 259, 650, 716, 776, 992
Kzo9I	GATC	8 cut(s)	74, 177, 229, 400, 448, 470, 481, 985
LguI	GCTCTTC	1 cut(s)	428
LmnI	GCTCC	1 cut(s)	64
LweI	GCATC	2 cut(s)	490, 885
MaeI	CTAG	2 cut(s)	767, 1073
MaeII	ACGT	1 cut(s)	418
MalI	GATC	8 cut(s)	76, 179, 231, 402, 450, 472, 483, 987
MboI	GATC	8 cut(s)	74, 177, 229, 400, 448, 470, 481, 985
MboII	GAAGA	8 cut(s)	38, 302, 338, 445, 476, 688, 896, 899
MfeI	CAATTG	2 cut(s)	404, 900
MflI	RGATCY	2 cut(s)	74, 481
MhlI	GDGCHC	2 cut(s)	69, 440
MlsI	TGGCCA	1 cut(s)	1023
MluCI	AATT	7 cut(s)	404, 524, 692, 852, 900, 977, 1067
MluNI	TGGCCA	1 cut(s)	1023
MlyI	GAGTC	3 cut(s)	418, 569, 1078
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	8 cut(s)	129, 175, 472, 502, 646, 669, 1048, 1053
Mox20I	TGGCCA	1 cut(s)	1023
MroXI	GAANNNNTTC	1 cut(s)	1012
MscI	TGGCCA	1 cut(s)	1023
MseI	TTAA	1 cut(s)	569
MslI	CAYNNNNRTG	2 cut(s)	651, 1017
Msp20I	TGGCCA	1 cut(s)	1023
MspR9I	CCNGG	3 cut(s)	564, 839, 1025
MunI	CAATTG	2 cut(s)	404, 900
Mva1269I	GAATGC	2 cut(s)	658, 1012
MvaI	CCWGG	3 cut(s)	564, 839, 1025
MwoI	GCNNNNNNNGC	3 cut(s)	605, 800, 1029
NdeII	GATC	8 cut(s)	74, 177, 229, 400, 448, 470, 481, 985
NlaIII	CATG	6 cut(s)	170, 259, 650, 716, 776, 992
NlaIV	GGNNCC	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	431
PagI	TCATGA	1 cut(s)	988
PasI	CCCWGGG	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 21
PctI	GAATGC	2 cut(s)	658, 1012
PdmI	GAANNNNTTC	1 cut(s)	1012
PfeI	GAWTC	1 cut(s)	763
PleI	GAGTC	3 cut(s)	418, 569, 1078
PpsI	GAGTC	3 cut(s)	418, 569, 1078
PsiI	TTATAA	1 cut(s)	201
Psp124BI	GAGCTC	2 cut(s)	69, 440
Psp6I	CCWGG	3 cut(s)	562, 837, 1023
PspGI	CCWGG	3 cut(s)	562, 837, 1023
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	560
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	74, 481
RsaI	GTAC	3 cut(s)	212, 260, 1037
RsaNI	GTAC	3 cut(s)	211, 259, 1036
RseI	CAYNNNNRTG	2 cut(s)	651, 1017
SacI	GAGCTC	2 cut(s)	69, 440
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	569
Sau3AI	GATC	8 cut(s)	74, 177, 229, 400, 448, 470, 481, 985
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	3 cut(s)	418, 569, 1078
ScrFI	CCNGG	3 cut(s)	564, 839, 1025
SduI	GDGCHC	2 cut(s)	69, 440
SfaNI	GCATC	2 cut(s)	490, 885
SfcI	CTRYAG	1 cut(s)	460
SfuI	TTCGAA	1 cut(s)	431
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	2 cut(s)	651, 1017
SpeI	ACTAGT	1 cut(s)	1072
Sse9I	AATT	7 cut(s)	404, 524, 692, 852, 900, 977, 1067
SsiI	CCGC	1 cut(s)	78
SspI	AATATT	2 cut(s)	154, 622
SspMI	CTAG	2 cut(s)	767, 1073
SstI	GAGCTC	2 cut(s)	69, 440
StyD4I	CCNGG	3 cut(s)	562, 837, 1023
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	6 cut(s)	120, 180, 431, 469, 642, 925
TasI	AATT	7 cut(s)	404, 524, 692, 852, 900, 977, 1067
TatI	WGTACW	1 cut(s)	1035
TfiI	GAWTC	1 cut(s)	763
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	3 cut(s)	524, 852, 977
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	1012
XspI	CTAG	2 cut(s)	767, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.