Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Forward (+)

65224427 .. 65226042

Gene Structure 1616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG469000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTTGGTACTCACCTTATTTCATGTTCTTAGGTGTGGTCTTGGTCTTCTCATGTATGGATTTGGATCGAAGAAGACTTTGCTTGAAGATTTTGCTTCAACATCCTTGACCGAGTATTCTGCGTTTGTTATCAATGGATATCTTCCAACAATAAATATAAAGCAGGTTTTGACATCCTTAGCTGAAGTTCTATGGGATCAATTGAAAATCAAACGCAGGACTCCTTCTAAGAGCTTGTCCAAAGATCAACAACCCTTTAGTTCTCGATCTGTGGAGGATCTTCTTGCATTTTTGGATGGATCAGAGGATAGGACAAGTGAATTTCTTGTATGTGTAATCATTCACAACATTGATGGGCCTGGATTAAGGGACTCTGAAATCCAGCAGTATCTTGCAAGAGTTGCTTCTTGTCCCAATATTCGTATTGTGGCCTCTATCGATCATGTGAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACTCAATTCAACTGGTGCTGGTATCATGTTCCTACCTTTGCGCCATACAAGATCGAAGGAACGTTCTTTCCCTTGATTCTAGCTCATGGCAATACCACCCAAACTGCCAAAAATGCTGTTATAGTTTTACAGAGTTTGACACCCAATGCCCAGGGCGTGTTCAAAATTCTTGCAGAATATCAACTGTCTCACTCTGAAGAAGAAGGGATGCCAATTGATAATCTGTTTGCAACCTGTCGCGAACGCTTCCTTGTGGGCAGCCGGCCTATGCTCAACTCCCATTTGACCGAATTCAAAGATCATGAGTTGGTCAAAACAAGAAGGCATTCTGATGGCCAGGATTGCTTGTACATTCCTCTAACAAGTGAGGCACTTGAAAAACTACTAGTGGAGATGACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

295

Amino Acids

33.42

Weight (kDa)

6.2

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA-like_ORC2	PF04084	8 - 171	3.3e-47	Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2	PF24882	224 - 284	2.1e-20	ORC2 WHD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	154
AccII	CGCG	1 cut(s)	723
AclI	AACGTT	1 cut(s)	545
AclWI	GGATC	4 cut(s)	73, 204, 285, 307
AcoI	YGGCCR	1 cut(s)	817
AcsI	RAATTY	3 cut(s)	320, 648, 773
AcuI	CTGAAG	2 cut(s)	204, 699
AfaI	GTAC	2 cut(s)	9, 833
AgsI	TTSAA	7 cut(s)	86, 99, 205, 493, 646, 778, 860
AhlI	ACTAGT	1 cut(s)	868
AjnI	CCWGG	3 cut(s)	358, 633, 819
AloI	GAACNNNNNNTCC	2 cut(s)	535, 567
AluBI	AGCT	3 cut(s)	182, 234, 566
AluI	AGCT	3 cut(s)	182, 234, 566
Alw26I	GTCTC	1 cut(s)	675
AlwI	GGATC	4 cut(s)	73, 204, 285, 307
AoxI	GGCC	4 cut(s)	356, 429, 746, 817
ApeKI	GCWGC	1 cut(s)	741
ApoI	RAATTY	3 cut(s)	320, 648, 773
Asp700I	GAANNNNTTC	1 cut(s)	808
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	819
BbsI	GAAGAC	2 cut(s)	38, 80
BbvI	GCAGC	1 cut(s)	753
BccI	CCATC	4 cut(s)	290, 347, 469, 809
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	3 cut(s)	360, 635, 821
BcoDI	GTCTC	1 cut(s)	675
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	2 cut(s)	563, 869
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	742
BlsI	GCNGC	1 cut(s)	743
Bme1390I	CCNGG	3 cut(s)	360, 635, 821
BmgT120I	GGNCC	1 cut(s)	356
BmrFI	CCNGG	3 cut(s)	360, 635, 821
BmsI	GCATC	1 cut(s)	681
BpiI	GAAGAC	2 cut(s)	38, 80
Bpu10I	CCTNAGC	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	633, 634
Bse118I	RCCGGY	1 cut(s)	744
Bse1I	ACTGG	1 cut(s)	500
Bse8I	GATNNNNATC	1 cut(s)	64
BseBI	CCWGG	3 cut(s)	360, 635, 821
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	633, 634
BseGI	GGATG	4 cut(s)	101, 173, 301, 696
BseJI	GATNNNNATC	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	723
BshFI	GGCC	4 cut(s)	358, 431, 748, 819
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	745
BslFI	GGGAC	3 cut(s)	383, 396, 479
BsmAI	GTCTC	1 cut(s)	675
BsmFI	GGGAC	3 cut(s)	383, 396, 479
BsmI	GAATGC	2 cut(s)	454, 808
BsnI	GGCC	4 cut(s)	358, 431, 748, 819
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	9 cut(s)	65, 196, 244, 266, 277, 299, 439, 534, 781
Bsp68I	TCGCGA	1 cut(s)	723
BspANI	GGCC	4 cut(s)	358, 431, 748, 819
BspDI	ATCGAT	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	723
BspHI	TCATGA	1 cut(s)	784
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	4 cut(s)	73, 204, 285, 307
BsrFI	RCCGGY	1 cut(s)	744
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	744
BssECI	CCNNGG	2 cut(s)	633, 634
BssMI	GATC	9 cut(s)	65, 196, 244, 266, 277, 299, 439, 534, 781
Bst2UI	CCWGG	3 cut(s)	360, 635, 821
Bst4CI	ACNGT	1 cut(s)	669
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstAUI	TGTACA	1 cut(s)	831
BstC8I	GCNNGC	1 cut(s)	746
BstDEI	CTNAG	4 cut(s)	29, 178, 228, 882
BstF5I	GGATG	4 cut(s)	101, 173, 301, 696
BstFNI	CGCG	1 cut(s)	723
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	9 cut(s)	68, 199, 247, 269, 280, 302, 442, 537, 784
BstMAI	GTCTC	1 cut(s)	675
BstMBI	GATC	9 cut(s)	65, 196, 244, 266, 277, 299, 439, 534, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 596, 825
BstNI	CCWGG	3 cut(s)	360, 635, 821
BstSCI	CCNGG	3 cut(s)	358, 633, 819
BstUI	CGCG	1 cut(s)	723
BstV1I	GCAGC	1 cut(s)	753
BstV2I	GAAGAC	2 cut(s)	38, 80
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	4 cut(s)	358, 431, 748, 819
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	101, 173, 301, 696
BtuMI	TCGCGA	1 cut(s)	723
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	746
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	744
Cfr13I	GGNCC	1 cut(s)	356
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	8, 832
CviAII	CATG	6 cut(s)	23, 52, 443, 509, 569, 785
CviJI	RGCY	8 cut(s)	182, 234, 358, 431, 566, 744, 748, 819
CviKI_1	RGCY	8 cut(s)	182, 234, 358, 431, 566, 744, 748, 819
CviQI	GTAC	2 cut(s)	8, 832
DdeI	CTNAG	4 cut(s)	29, 178, 228, 882
DpnI	GATC	9 cut(s)	67, 198, 246, 268, 279, 301, 441, 536, 783
DpnII	GATC	9 cut(s)	65, 196, 244, 266, 277, 299, 439, 534, 781
EaeI	YGGCCR	1 cut(s)	817
Eco32I	GATATC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	204, 699
EcoRI	GAATTC	1 cut(s)	773
EcoRII	CCWGG	3 cut(s)	358, 633, 819
EcoRV	GATATC	1 cut(s)	140
FaeI	CATG	6 cut(s)	26, 55, 446, 512, 572, 788
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FaqI	GGGAC	3 cut(s)	383, 396, 479
FatI	CATG	6 cut(s)	22, 51, 442, 508, 568, 784
Fnu4HI	GCNGC	1 cut(s)	742
FokI	GGATG	4 cut(s)	88, 160, 308, 703
Fsp4HI	GCNGC	1 cut(s)	742
FspBI	CTAG	2 cut(s)	563, 869
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	742
HaeIII	GGCC	4 cut(s)	358, 431, 748, 819
HapII	CCGG	1 cut(s)	745
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	6 cut(s)	26, 55, 446, 512, 572, 788
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	4 cut(s)	220, 371, 559, 880
HpaII	CCGG	1 cut(s)	745
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	4 cut(s)	304, 376, 679, 814
Hpy188III	TCNNGA	3 cut(s)	264, 722, 785
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	4 cut(s)	234, 533, 680, 798
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	5 cut(s)	287, 395, 452, 656, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 596, 825
HpyF3I	CTNAG	4 cut(s)	29, 178, 228, 882
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	6 cut(s)	26, 55, 446, 512, 572, 788
HspAI	GCGC	1 cut(s)	524
KroI	GCCGGC	1 cut(s)	744
KroNI	GCCGGC	1 cut(s)	746
Kzo9I	GATC	9 cut(s)	65, 196, 244, 266, 277, 299, 439, 534, 781
Lsp1109I	GCAGC	1 cut(s)	753
LweI	GCATC	1 cut(s)	681
MaeI	CTAG	2 cut(s)	563, 869
MaeII	ACGT	1 cut(s)	545
MalI	GATC	9 cut(s)	67, 198, 246, 268, 279, 301, 441, 536, 783
MboI	GATC	9 cut(s)	65, 196, 244, 266, 277, 299, 439, 534, 781
MboII	GAAGA	9 cut(s)	38, 82, 85, 98, 134, 272, 484, 692, 695
MfeI	CAATTG	2 cut(s)	200, 696
MflI	RGATCY	1 cut(s)	277
MlsI	TGGCCA	1 cut(s)	819
MluCI	AATT	6 cut(s)	200, 320, 488, 648, 696, 773
MluNI	TGGCCA	1 cut(s)	819
MlyI	GAGTC	3 cut(s)	214, 365, 874
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	6 cut(s)	268, 298, 442, 465, 844, 849
Mox20I	TGGCCA	1 cut(s)	819
MroNI	GCCGGC	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	808
MscI	TGGCCA	1 cut(s)	819
MseI	TTAA	1 cut(s)	365
MslI	CAYNNNNRTG	2 cut(s)	447, 813
Msp20I	TGGCCA	1 cut(s)	819
MspI	CCGG	1 cut(s)	745
MspR9I	CCNGG	3 cut(s)	360, 635, 821
MunI	CAATTG	2 cut(s)	200, 696
Mva1269I	GAATGC	2 cut(s)	454, 808
MvaI	CCWGG	3 cut(s)	360, 635, 821
MvnI	CGCG	1 cut(s)	723
MwoI	GCNNNNNNNGC	3 cut(s)	401, 596, 825
NaeI	GCCGGC	1 cut(s)	746
NdeII	GATC	9 cut(s)	65, 196, 244, 266, 277, 299, 439, 534, 781
NgoMIV	GCCGGC	1 cut(s)	744
NlaIII	CATG	6 cut(s)	26, 55, 446, 512, 572, 788
NruI	TCGCGA	1 cut(s)	723
PagI	TCATGA	1 cut(s)	784
PasI	CCCWGGG	1 cut(s)	634
PctI	GAATGC	2 cut(s)	454, 808
PdiI	GCCGGC	1 cut(s)	746
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	743
PleI	GAGTC	3 cut(s)	214, 365, 874
PpsI	GAGTC	3 cut(s)	214, 365, 874
Psp1406I	AACGTT	1 cut(s)	545
Psp6I	CCWGG	3 cut(s)	358, 633, 819
PspGI	CCWGG	3 cut(s)	358, 633, 819
PspPI	GGNCC	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	723
RsaI	GTAC	2 cut(s)	9, 833
RsaNI	GTAC	2 cut(s)	8, 832
RseI	CAYNNNNRTG	2 cut(s)	447, 813
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	1 cut(s)	742
Sau3AI	GATC	9 cut(s)	65, 196, 244, 266, 277, 299, 439, 534, 781
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	3 cut(s)	214, 365, 874
ScrFI	CCNGG	3 cut(s)	360, 635, 821
SfaNI	GCATC	1 cut(s)	681
SmiMI	CAYNNNNRTG	2 cut(s)	447, 813
SpeI	ACTAGT	1 cut(s)	868
Sse9I	AATT	6 cut(s)	200, 320, 488, 648, 696, 773
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	2 cut(s)	563, 869
StyD4I	CCNGG	3 cut(s)	358, 633, 819
TaaI	ACNGT	1 cut(s)	669
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	4 cut(s)	68, 265, 438, 537
TaqII	GACCGA	2 cut(s)	125, 785
TasI	AATT	6 cut(s)	200, 320, 488, 648, 696, 773
TatI	WGTACW	1 cut(s)	831
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TseI	GCWGC	1 cut(s)	741
TspDTI	ATGAA	1 cut(s)	11
XapI	RAATTY	3 cut(s)	320, 648, 773
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	2 cut(s)	563, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.