Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Reverse (-)

50813062 .. 50814493

Gene Structure 1432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0359500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATAATCTTCCAAGAGTGAGACAGTTTTCCCGTACTATGAACCACAATATTCCGGGCAGGCGTAAGCATCATGTCGTCTCCGGTCCTTCCGTTCATGTATGGAAAGCCAAGCCTGAAGAGCACAAGGATTGGAGGAACGACAAATTATTGGAGAAGAAGAGGAGCAGCAAAGGGAAAGTCATTCCTTTTCCTTTATGTTCATCTGACCAGAAACCATTTTGCACCACAGTGATGATCAAGAATATTCCCAATCAATTCCGGAGGACTAATTTGGTGACCATATTGAGAAGCCACTGCAAGGAGGAAAACAAAAAGTCTGAGTACAAATCTGAGTTCGATTTTGTGTATTTGCCAATGGATTTCCAGCAATACTGGGAGAAGAAGAGGGTTGTAAATCTGGGTTATGCCTTTGTCAACTTCACCAGTTACGTTGCTGCTTTGAGGTTCTTTCAATACTACCACAACCGAGAATGGAATGTGAAGCTTAACAACAAATTTTGTCAAGTTACCTGCGCCAAAATCCAGGGAAAGGAAGCTCTTATGCGGCTATTTGAGAACAGTGTATTCTGGTGCCACACCGATATGTACTTGCCTGTGGTTTTGGAACCAGCCTGTGACGGTGAGCTTCTGCCCGACCTCATCAACGTTGGAAGCCGTGTTTGTGCACCTTCGAGGAAACCCAGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

231

Amino Acids

27.35

Weight (kDa)

9.69

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_2	PF04059	76 - 185	1.3e-17	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	573
AccIII	TCCGGA	1 cut(s)	261
AciI	CCGC	1 cut(s)	547
AclI	AACGTT	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	3 cut(s)	37, 326, 590
AfiI	CCNNNNNNNGG	2 cut(s)	301, 532
AgsI	TTSAA	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	525
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	487, 539, 628
AluI	AGCT	3 cut(s)	487, 539, 628
Alw21I	GWGCWC	2 cut(s)	126, 670
Alw26I	GTCTC	2 cut(s)	16, 85
Alw44I	GTGCAC	1 cut(s)	666
Aor13HI	TCCGGA	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	666
ApeKI	GCWGC	2 cut(s)	168, 437
ApoI	RAATTY	1 cut(s)	497
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	289, 415, 635
AvaII	GGWCC	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	573
Bbv12I	GWGCWC	2 cut(s)	126, 670
BbvI	GCAGC	2 cut(s)	180, 424
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	527
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	16, 85
BfuAI	ACCTGC	1 cut(s)	521
BisI	GCNGC	3 cut(s)	169, 438, 548
BlsI	GCNGC	3 cut(s)	170, 439, 549
Bme1390I	CCNGG	2 cut(s)	57, 527
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	575, 609
BmrFI	CCNGG	2 cut(s)	57, 527
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	2 cut(s)	83, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 532
Bse1I	ACTGG	2 cut(s)	380, 426
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	301, 532
BseMII	CTCAG	2 cut(s)	312, 324
BseNI	ACTGG	2 cut(s)	380, 426
BseRI	GAGGAG	1 cut(s)	178
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	2 cut(s)	180, 424
BshNI	GGYRCC	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	126, 670
BsiSI	CCGG	3 cut(s)	56, 84, 262
BslI	CCNNNNNNNGG	2 cut(s)	301, 532
BsmAI	GTCTC	2 cut(s)	16, 85
BsmBI	CGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	126, 670
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	547
BspCNI	CTCAG	2 cut(s)	313, 325
BspEI	TCCGGA	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	575, 609
BspMI	ACCTGC	1 cut(s)	521
BspQI	GCTCTTC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	380, 426
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	4 cut(s)	27, 232, 563, 623
Bst6I	CTCTTC	3 cut(s)	114, 155, 380
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	321, 333
BstEII	GGTNACC	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	2 cut(s)	16, 85
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	527
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	55, 525
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	2 cut(s)	180, 424
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	3 cut(s)	237, 295, 568
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	1 cut(s)	62
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	36, 325, 589
CviAII	CATG	2 cut(s)	74, 98
CviJI	RGCY	9 cut(s)	110, 115, 294, 487, 539, 550, 614, 628, 657
CviKI_1	RGCY	9 cut(s)	110, 115, 294, 487, 539, 550, 614, 628, 657
CviQI	GTAC	3 cut(s)	36, 325, 589
DdeI	CTNAG	2 cut(s)	321, 333
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Eam1104I	CTCTTC	3 cut(s)	114, 155, 380
EarI	CTCTTC	3 cut(s)	114, 155, 380
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	77, 101
FaiI	YATR	9 cut(s)	41, 75, 99, 103, 199, 284, 408, 545, 587
FatI	CATG	2 cut(s)	73, 97
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	169, 438, 548
Fsp4HI	GCNGC	3 cut(s)	169, 438, 548
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	3 cut(s)	169, 438, 548
HapII	CCGG	3 cut(s)	56, 84, 262
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	2 cut(s)	77, 101
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	485
HpaII	CCGG	3 cut(s)	56, 84, 262
HphI	GGTGA	3 cut(s)	289, 415, 635
Hpy166II	GTNNAC	2 cut(s)	418, 668
Hpy188I	TCNGA	3 cut(s)	208, 322, 334
Hpy188III	TCNNGA	2 cut(s)	241, 262
Hpy8I	GTNNAC	2 cut(s)	418, 668
HpyAV	CCTTC	2 cut(s)	99, 681
HpyCH4III	ACNGT	4 cut(s)	27, 232, 563, 623
HpyCH4IV	ACGT	2 cut(s)	432, 648
HpyCH4V	TGCA	3 cut(s)	225, 300, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	321, 333
HpySE526I	ACGT	2 cut(s)	432, 648
Hsp92II	CATG	2 cut(s)	77, 101
HspAI	GCGC	1 cut(s)	516
Kpn2I	TCCGGA	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	237
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	180, 424
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	432, 648
MaeIII	GTNAC	4 cut(s)	277, 428, 508, 617
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	5 cut(s)	131, 169, 172, 394, 397
MhlI	GDGCHC	2 cut(s)	126, 670
MluCI	AATT	4 cut(s)	146, 257, 271, 497
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	8 cut(s)	129, 156, 258, 298, 381, 438, 650, 669
MroI	TCCGGA	1 cut(s)	261
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	3 cut(s)	230, 233, 584
MspI	CCGG	3 cut(s)	56, 84, 262
MspR9I	CCNGG	2 cut(s)	57, 527
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	77, 101
NlaIV	GGNNCC	2 cut(s)	575, 609
NmuCI	GTSAC	2 cut(s)	277, 617
OliI	CACNNNNGTG	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	170, 439, 549
Psp1406I	AACGTT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	525
PspEI	GGTNACC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	575, 609
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	3 cut(s)	37, 326, 590
RsaNI	GTAC	3 cut(s)	36, 325, 589
RseI	CAYNNNNRTG	3 cut(s)	230, 233, 584
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	3 cut(s)	169, 438, 548
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	57, 527
SduI	GDGCHC	2 cut(s)	126, 670
SetI	ASST	9 cut(s)	435, 449, 489, 515, 541, 630, 642, 651, 673
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	3 cut(s)	230, 233, 584
Sse9I	AATT	4 cut(s)	146, 257, 271, 497
SsiI	CCGC	1 cut(s)	547
SspI	AATATT	2 cut(s)	52, 247
StyD4I	CCNGG	2 cut(s)	55, 525
TaaI	ACNGT	4 cut(s)	27, 232, 563, 623
TaiI	ACGT	2 cut(s)	435, 651
TaqI	TCGA	2 cut(s)	339, 674
TasI	AATT	4 cut(s)	146, 257, 271, 497
TatI	WGTACW	2 cut(s)	324, 588
TauI	GCSGC	1 cut(s)	550
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	3 cut(s)	237, 302, 568
TseFI	GTSAC	2 cut(s)	277, 617
TseI	GCWGC	2 cut(s)	168, 437
Tsp45I	GTSAC	2 cut(s)	277, 617
TspDTI	ATGAA	3 cut(s)	56, 86, 192
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	3 cut(s)	237, 302, 568
VneI	GTGCAC	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.