Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Reverse (-)

4956551 .. 4957796

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTGTAGATGTGGTCTTGGGCTTCTTATGTATGGATTTGGATCTAAGAAGGCCTTGCTTGAAGATTTTGCTTCAACATCGTTAACCGAGTATTCTGTGGTTGTTGTCAATGGATATCTGCAGGGAACAAATATAAAACAGGTTGTGGTAGCCTTAGCTGAACTTCTGTGGGATCAATTGAAAACCAAAAGGAGTCCTTCCAGGAGCTCGTCCAAAGCGGAACAGCCATTTAATTCCAGATCCATGGATGATCTTCTTGCATTTTTGGATGGATCGGAAGATACCACAAACGAATGTGTAGTATGTGTCGTCATTCACAACATTGATGGACCTGGATCAAGGGACTTGGAAAACCAACAGTGTCTTGCACAAGTTGCTTCTTGTTCTCATATTCGCATTGTGGCCTCTATTGATCATGTGAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACACAGTTCAACTGGTGCTGGCATCACGTTCCTACCTTTGCACCATACAGGGTCGAAGGAATGCTCATTCCGCTGATCCTTGCACATGGAAATACCACCCAAAGTGCCAAAGGTGCTACAATAGTTTTGCAGAGTTTCACATCCAATGCTCAGAGCGTGTTCAAAGTTCTTGCAGAATATCAACTATCCCACTCGAACGAAGAAGGGATGCCGATTGATAATCTGTACGCAACCTGTCGAGAGCGGTTCCTTGTGAGCAGCCAGCTTACCCTTAACTCCCATATGACAGAATTCAAAGATCATGAGTTGGTGAAGACCGAAAGGAATTCTGACGGCCAGGATTGCTTGCACATCCCTCTCACGAATGAGGCACTTGAAACACTGCTAGCGGATCTGAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

287

Amino Acids

31.8

Weight (kDa)

5.52

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	700
AciI	CCGC	4 cut(s)	218, 527, 700, 845
AclWI	GGATC	7 cut(s)	49, 180, 234, 280, 343, 526, 855
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	2 cut(s)	746, 781
AfaI	GTAC	1 cut(s)	683
AgsI	TTSAA	7 cut(s)	62, 75, 181, 466, 619, 751, 833
AjnI	CCWGG	3 cut(s)	200, 331, 792
AluBI	AGCT	3 cut(s)	158, 207, 721
AluI	AGCT	3 cut(s)	158, 207, 721
Alw21I	GWGCWC	1 cut(s)	209
AlwI	GGATC	7 cut(s)	49, 180, 234, 280, 343, 526, 855
AoxI	GGCC	3 cut(s)	51, 402, 790
ApeKI	GCWGC	1 cut(s)	714
ApoI	RAATTY	2 cut(s)	746, 781
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	778
AsuNHI	GCTAGC	1 cut(s)	841
AvaII	GGWCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	726
BccI	CCATC	3 cut(s)	263, 320, 442
BceAI	ACGGC	1 cut(s)	805
BciT130I	CCWGG	3 cut(s)	202, 333, 794
BclI	TGATCA	1 cut(s)	412
BfaI	CTAG	1 cut(s)	842
BfmI	CTRYAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	715
BlsI	GCNGC	1 cut(s)	716
Bme1390I	CCNGG	3 cut(s)	202, 333, 794
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	704
BmrFI	CCNGG	3 cut(s)	202, 333, 794
BmsI	GCATC	2 cut(s)	487, 654
BmtI	GCTAGC	1 cut(s)	845
BpiI	GAAGAC	1 cut(s)	776
Bpu10I	CCTNAGC	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	473
Bse8I	GATNNNNATC	1 cut(s)	40
BseBI	CCWGG	3 cut(s)	202, 333, 794
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	5 cut(s)	253, 274, 596, 669, 807
BseJI	GATNNNNATC	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	620, 842
BseNI	ACTGG	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	726
BshFI	GGCC	3 cut(s)	53, 404, 792
BsiHKAI	GWGCWC	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	356, 452
BsmFI	GGGAC	2 cut(s)	356, 452
BsmI	GAATGC	2 cut(s)	427, 522
BsnI	GGCC	3 cut(s)	53, 404, 792
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	4 cut(s)	218, 527, 700, 845
BspANI	GGCC	3 cut(s)	53, 404, 792
BspCNI	CTCAG	2 cut(s)	619, 843
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	1 cut(s)	704
BspMAI	CTGCAG	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	845
BspPI	GGATC	7 cut(s)	49, 180, 234, 280, 343, 526, 855
BsrBI	CCGCTC	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	202, 333, 794
Bst4CI	ACNGT	2 cut(s)	360, 462
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	4 cut(s)	476, 719, 803, 843
BstDEI	CTNAG	4 cut(s)	45, 154, 606, 851
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	5 cut(s)	253, 274, 596, 669, 807
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 526, 569, 798
BstNI	CCWGG	3 cut(s)	202, 333, 794
BstSCI	CCNGG	3 cut(s)	200, 331, 792
BstSFI	CTRYAG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	726
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	3 cut(s)	41, 239, 847
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	3 cut(s)	41, 239, 847
BsuRI	GGCC	3 cut(s)	53, 404, 792
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	5 cut(s)	253, 274, 596, 669, 807
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	2 cut(s)	365, 836
Cac8I	GCNNGC	4 cut(s)	476, 719, 803, 843
CciI	TCATGA	1 cut(s)	757
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	4 cut(s)	244, 416, 542, 758
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	4 cut(s)	45, 154, 606, 851
EaeI	YGGCCR	1 cut(s)	790
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	207
EcoRI	GAATTC	2 cut(s)	746, 781
EcoRII	CCWGG	3 cut(s)	200, 331, 792
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	4 cut(s)	247, 419, 545, 761
FalI	AAGNNNNNCTT	4 cut(s)	38, 70, 181, 213
FaqI	GGGAC	2 cut(s)	356, 452
FatI	CATG	4 cut(s)	243, 415, 541, 757
FauNDI	CATATG	1 cut(s)	738
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	715
FokI	GGATG	5 cut(s)	260, 281, 583, 676, 794
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	715
FspBI	CTAG	1 cut(s)	842
GluI	GCNGC	1 cut(s)	715
HaeIII	GGCC	3 cut(s)	53, 404, 792
Hin1II	CATG	4 cut(s)	247, 419, 545, 761
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	193, 853
HpaI	GTTAAC	1 cut(s)	84
HphI	GGTGA	1 cut(s)	778
Hpy166II	GTNNAC	2 cut(s)	84, 454
Hpy188I	TCNGA	4 cut(s)	277, 609, 787, 852
Hpy188III	TCNNGA	4 cut(s)	237, 695, 758, 817
Hpy8I	GTNNAC	2 cut(s)	84, 454
HpyAV	CCTTC	4 cut(s)	43, 207, 506, 653
HpyCH4III	ACNGT	2 cut(s)	360, 462
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	9 cut(s)	121, 260, 368, 425, 497, 539, 586, 629, 805
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 526, 569, 798
HpyF3I	CTNAG	4 cut(s)	45, 154, 606, 851
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	247, 419, 545, 761
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	204
Lsp1109I	GCAGC	1 cut(s)	726
LweI	GCATC	2 cut(s)	487, 654
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	1 cut(s)	483
MbiI	CCGCTC	1 cut(s)	700
MboII	GAAGA	6 cut(s)	74, 245, 290, 457, 668, 781
MfeI	CAATTG	1 cut(s)	176
MflI	RGATCY	3 cut(s)	41, 239, 847
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	4 cut(s)	176, 232, 746, 781
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	415, 438, 817, 822
MseI	TTAA	3 cut(s)	83, 231, 729
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	529
MspR9I	CCNGG	3 cut(s)	202, 333, 794
MunI	CAATTG	1 cut(s)	176
Mva1269I	GAATGC	2 cut(s)	427, 522
MvaI	CCWGG	3 cut(s)	202, 333, 794
MwoI	GCNNNNNNNGC	4 cut(s)	374, 526, 569, 798
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	738
NheI	GCTAGC	1 cut(s)	841
NlaIII	CATG	4 cut(s)	247, 419, 545, 761
NlaIV	GGNNCC	1 cut(s)	704
PagI	TCATGA	1 cut(s)	757
PceI	AGGCCT	1 cut(s)	53
PctI	GAATGC	2 cut(s)	427, 522
PfoI	TCCNGGA	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	716
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	209
Psp6I	CCWGG	3 cut(s)	200, 331, 792
PspGI	CCWGG	3 cut(s)	200, 331, 792
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	3 cut(s)	41, 239, 847
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	83, 231, 729
SatI	GCNGC	1 cut(s)	715
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	202, 333, 794
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	2 cut(s)	487, 654
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	4 cut(s)	176, 232, 746, 781
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	4 cut(s)	218, 527, 700, 845
SspMI	CTAG	1 cut(s)	842
SstI	GAGCTC	1 cut(s)	209
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	200, 331, 792
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	360, 462
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	510, 650, 694
TaqII	GACCGA	1 cut(s)	788
TasI	AATT	4 cut(s)	176, 232, 746, 781
Tru1I	TTAA	3 cut(s)	83, 231, 729
Tru9I	TTAA	3 cut(s)	83, 231, 729
TscAI	CASTG	2 cut(s)	365, 843
TseI	GCWGC	1 cut(s)	714
TspRI	CASTG	2 cut(s)	365, 843
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	746, 781
XspI	CTAG	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.