Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Forward (+)

65398610 .. 65401155

Gene Structure 2546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG485100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGATGAACGATGCCGACGACGAAGAGTTTGGGTTCTCTAGAAACTACTTTCTGGCGAAGGAGCTCGGTGGCTCCGCCGTGAAATCCCACTCTAAGCTCTCCGATATCAATATCGTCGACGAACAGGAACTGAGGGCAGCTGTATCTAATATTGAACCCAAACATGAGAAAGAGATCAAGGATTTGATTAGCAGTTATAAGAGGTTGTACCCCAGATGGGCTTTTGATCTTAGGTGTGGTCTTGGTCTTCTCATGTATGGATTTGGATCTAAGAAGACTTTGCTTGAAGATTTTGCTTCAACATCCTTGACCGAGTATTCTGCGTTTGTTATCAATGGATATCTTCCAACAATAAATATAAAGCAGGTTTTGACATCCTTAGCTGAAGTTCTATGGGATCAATTGAAAATCAAACGCAGGACTCCTTCTAAGAGCTTGTCCAAAGATCAACAACCCTTTAGTTCTCGATCTGTGGAGGATCTTCTTGCATTTTTGGATGGATCAGAGGATAGGACAAGTGAATTTCTTGTATGTGTAATCATTCACAACATTGATGGGCCTGGATTAAGGGACTCTGAAATCCAGCAGTATCTTGCAAGAGTTGCTTCTTGTCCCAATATTCGTATTGTGGCCTCTATCGACCATGTGAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACTCAATTCAACTGGTGCTGGTATCATGTTCCTACCTTTGCGCCATACAAGATCGAAGGAACGTTCTTTCCCTTGATTCTAGCTCATGGCAATACCACCCAAACTGCCAAAAATGCTGTTATAGTTTTACAGAGTTTGACACCCAATGCCCAGGGCGTGTTCAAAATTCTTGCAGAATATCAACTGTCTCGCTCTGAAGAAGAAGGGATGCCAATTGATAATCTGTTTGCAACCTGTCGCGAACGCTTCCTCGTGGGCAGCCGGCCTATGCTCAACTCCCATTTGACCGAATTCAAAGATCATGAGTTGGTCAAAACAAGAAGGCATTCTGATGGCCAGGATTGCTTGTACATTCCTCTAACAAGTGAGGCACTTGAAAAACTACTAGTGGAGATGACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

363

Amino Acids

41.29

Weight (kDa)

5.74

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA-like_ORC2	PF04084	59 - 239	2.5e-53	Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2	PF24882	293 - 352	4.1e-20	ORC2 WHD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	927
AciI	CCGC	1 cut(s)	78
AclI	AACGTT	1 cut(s)	749
AclWI	GGATC	4 cut(s)	277, 408, 489, 511
AcoI	YGGCCR	1 cut(s)	1021
AcsI	RAATTY	3 cut(s)	524, 852, 977
AcuI	CTGAAG	2 cut(s)	408, 903
AfaI	GTAC	2 cut(s)	212, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	8 cut(s)	158, 290, 303, 409, 697, 850, 982, 1064
AhlI	ACTAGT	1 cut(s)	1072
AjnI	CCWGG	3 cut(s)	562, 837, 1023
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
AluBI	AGCT	6 cut(s)	67, 100, 143, 386, 438, 770
AluI	AGCT	6 cut(s)	67, 100, 143, 386, 438, 770
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	879
AlwI	GGATC	4 cut(s)	277, 408, 489, 511
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	4 cut(s)	560, 633, 950, 1021
ApeKI	GCWGC	2 cut(s)	140, 945
ApoI	RAATTY	3 cut(s)	524, 852, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
Asp700I	GAANNNNTTC	1 cut(s)	1012
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	1 cut(s)	560
BalI	TGGCCA	1 cut(s)	1023
BanII	GRGCYC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	938
BbsI	GAAGAC	2 cut(s)	242, 284
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	152, 957
BccI	CCATC	5 cut(s)	213, 494, 551, 673, 1013
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	3 cut(s)	564, 839, 1025
BcoDI	GTCTC	1 cut(s)	879
BcuI	ACTAGT	1 cut(s)	1072
BfaI	CTAG	3 cut(s)	42, 767, 1073
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	141, 946
BlsI	GCNGC	2 cut(s)	142, 947
Bme1390I	CCNGG	3 cut(s)	564, 839, 1025
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	3 cut(s)	564, 839, 1025
BmsI	GCATC	2 cut(s)	4, 885
BpiI	GAAGAC	2 cut(s)	242, 284
Bpu10I	CCTNAGC	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	837, 838
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse118I	RCCGGY	1 cut(s)	948
Bse1I	ACTGG	1 cut(s)	704
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	3 cut(s)	564, 839, 1025
BseDI	CCNNGG	2 cut(s)	837, 838
BseGI	GGATG	4 cut(s)	305, 377, 505, 900
BseJI	GATNNNNATC	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	704
BseXI	GCAGC	2 cut(s)	152, 957
Bsh1236I	CGCG	1 cut(s)	927
BshFI	GGCC	4 cut(s)	562, 635, 952, 1023
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	949
BslFI	GGGAC	3 cut(s)	587, 600, 683
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	879
BsmFI	GGGAC	3 cut(s)	587, 600, 683
BsmI	GAATGC	2 cut(s)	658, 1012
BsnI	GGCC	4 cut(s)	562, 635, 952, 1023
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp68I	TCGCGA	1 cut(s)	927
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	562, 635, 952, 1023
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	927
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	4 cut(s)	277, 408, 489, 511
BsrFI	RCCGGY	1 cut(s)	948
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	704
BssAI	RCCGGY	1 cut(s)	948
BssECI	CCNNGG	2 cut(s)	837, 838
BssSI	CACGAG	1 cut(s)	938
Bst2BI	CACGAG	1 cut(s)	938
Bst2UI	CCWGG	3 cut(s)	564, 839, 1025
Bst4CI	ACNGT	1 cut(s)	873
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	1035
BstC8I	GCNNGC	1 cut(s)	950
BstDEI	CTNAG	7 cut(s)	96, 134, 233, 273, 382, 432, 1086
BstF5I	GGATG	4 cut(s)	305, 377, 505, 900
BstFNI	CGCG	1 cut(s)	927
BstHHI	GCGC	1 cut(s)	730
BstMAI	GTCTC	1 cut(s)	879
BstMWI	GCNNNNNNNGC	3 cut(s)	605, 800, 1029
BstNI	CCWGG	3 cut(s)	564, 839, 1025
BstSCI	CCNGG	3 cut(s)	562, 837, 1023
BstUI	CGCG	1 cut(s)	927
BstV1I	GCAGC	2 cut(s)	152, 957
BstV2I	GAAGAC	2 cut(s)	242, 284
BstX2I	RGATCY	2 cut(s)	269, 481
BstYI	RGATCY	2 cut(s)	269, 481
BsuRI	GGCC	4 cut(s)	562, 635, 952, 1023
BtsCI	GGATG	4 cut(s)	305, 377, 505, 900
BtuMI	TCGCGA	1 cut(s)	927
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	950
CaiI	CAGNNNCTG	1 cut(s)	133
CciI	TCATGA	1 cut(s)	988
CfoI	GCGC	1 cut(s)	730
Cfr10I	RCCGGY	1 cut(s)	948
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	211, 1036
CviAII	CATG	6 cut(s)	167, 256, 647, 713, 773, 989
CviQI	GTAC	2 cut(s)	211, 1036
DdeI	CTNAG	7 cut(s)	96, 134, 233, 273, 382, 432, 1086
EaeI	YGGCCR	1 cut(s)	1021
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco32I	GATATC	2 cut(s)	109, 344
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	408, 903
EcoICRI	GAGCTC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	3 cut(s)	562, 837, 1023
EcoRV	GATATC	2 cut(s)	109, 344
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	6 cut(s)	170, 259, 650, 716, 776, 992
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FaqI	GGGAC	3 cut(s)	587, 600, 683
FatI	CATG	6 cut(s)	166, 255, 646, 712, 772, 988
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	141, 946
FokI	GGATG	4 cut(s)	292, 364, 512, 907
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	141, 946
FspBI	CTAG	3 cut(s)	42, 767, 1073
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	2 cut(s)	141, 946
HaeIII	GGCC	4 cut(s)	562, 635, 952, 1023
HapII	CCGG	1 cut(s)	949
HhaI	GCGC	1 cut(s)	730
Hin1II	CATG	6 cut(s)	170, 259, 650, 716, 776, 992
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	4 cut(s)	424, 575, 763, 1084
HpaII	CCGG	1 cut(s)	949
Hpy166II	GTNNAC	2 cut(s)	121, 685
Hpy188I	TCNGA	5 cut(s)	106, 508, 580, 883, 1018
Hpy188III	TCNNGA	4 cut(s)	42, 468, 926, 989
Hpy8I	GTNNAC	2 cut(s)	121, 685
Hpy99I	CGWCG	4 cut(s)	23, 26, 122, 125
HpyAV	CCTTC	5 cut(s)	55, 438, 737, 884, 1002
HpyCH4III	ACNGT	1 cut(s)	873
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	5 cut(s)	491, 599, 656, 860, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	605, 800, 1029
HpyF3I	CTNAG	7 cut(s)	96, 134, 233, 273, 382, 432, 1086
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	6 cut(s)	170, 259, 650, 716, 776, 992
HspAI	GCGC	1 cut(s)	728
KroI	GCCGGC	1 cut(s)	948
KroNI	GCCGGC	1 cut(s)	950
LmnI	GCTCC	2 cut(s)	64, 80
Lsp1109I	GCAGC	2 cut(s)	152, 957
LweI	GCATC	2 cut(s)	4, 885
MaeI	CTAG	3 cut(s)	42, 767, 1073
MaeII	ACGT	1 cut(s)	749
MboII	GAAGA	9 cut(s)	38, 242, 289, 302, 338, 476, 688, 896, 899
MfeI	CAATTG	2 cut(s)	404, 900
MflI	RGATCY	2 cut(s)	269, 481
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	1023
MluCI	AATT	6 cut(s)	404, 524, 692, 852, 900, 977
MluNI	TGGCCA	1 cut(s)	1023
MlyI	GAGTC	3 cut(s)	418, 569, 1078
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	9 cut(s)	129, 198, 472, 502, 646, 669, 947, 1048, 1053
Mox20I	TGGCCA	1 cut(s)	1023
MroNI	GCCGGC	1 cut(s)	948
MroXI	GAANNNNTTC	1 cut(s)	1012
MscI	TGGCCA	1 cut(s)	1023
MseI	TTAA	1 cut(s)	569
MslI	CAYNNNNRTG	2 cut(s)	651, 1017
Msp20I	TGGCCA	1 cut(s)	1023
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	3 cut(s)	564, 839, 1025
MunI	CAATTG	2 cut(s)	404, 900
Mva1269I	GAATGC	2 cut(s)	658, 1012
MvaI	CCWGG	3 cut(s)	564, 839, 1025
MvnI	CGCG	1 cut(s)	927
MwoI	GCNNNNNNNGC	3 cut(s)	605, 800, 1029
NaeI	GCCGGC	1 cut(s)	950
NgoMIV	GCCGGC	1 cut(s)	948
NlaIII	CATG	6 cut(s)	170, 259, 650, 716, 776, 992
NlaIV	GGNNCC	1 cut(s)	76
NruI	TCGCGA	1 cut(s)	927
PagI	TCATGA	1 cut(s)	988
PasI	CCCWGGG	1 cut(s)	838
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	2 cut(s)	658, 1012
PdiI	GCCGGC	1 cut(s)	950
PdmI	GAANNNNTTC	1 cut(s)	1012
PfeI	GAWTC	1 cut(s)	763
PkrI	GCNGC	2 cut(s)	142, 947
PleI	GAGTC	3 cut(s)	418, 569, 1078
PpsI	GAGTC	3 cut(s)	418, 569, 1078
PsiI	TTATAA	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	562, 837, 1023
PspGI	CCWGG	3 cut(s)	562, 837, 1023
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	560
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	269, 481
PvuII	CAGCTG	1 cut(s)	143
RruI	TCGCGA	1 cut(s)	927
RsaI	GTAC	2 cut(s)	212, 1037
RsaNI	GTAC	2 cut(s)	211, 1036
RseI	CAYNNNNRTG	2 cut(s)	651, 1017
SacI	GAGCTC	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	569
SatI	GCNGC	2 cut(s)	141, 946
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	3 cut(s)	418, 569, 1078
ScrFI	CCNGG	3 cut(s)	564, 839, 1025
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	2 cut(s)	4, 885
SgrDI	CGTCGACG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	651, 1017
SpeI	ACTAGT	1 cut(s)	1072
Sse9I	AATT	6 cut(s)	404, 524, 692, 852, 900, 977
SsiI	CCGC	1 cut(s)	78
SspI	AATATT	2 cut(s)	154, 622
SspMI	CTAG	3 cut(s)	42, 767, 1073
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	562, 837, 1023
TaaI	ACNGT	1 cut(s)	873
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	4 cut(s)	120, 469, 642, 741
TaqII	GACCGA	2 cut(s)	329, 989
TasI	AATT	6 cut(s)	404, 524, 692, 852, 900, 977
TatI	WGTACW	1 cut(s)	1035
TfiI	GAWTC	1 cut(s)	763
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TseI	GCWGC	2 cut(s)	140, 945
TspDTI	ATGAA	1 cut(s)	23
XapI	RAATTY	3 cut(s)	524, 852, 977
XbaI	TCTAGA	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	1012
XspI	CTAG	3 cut(s)	42, 767, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.