Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Reverse (-)

3828165 .. 3834720

Gene Structure 6556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGTGGGATGGCGTGCTGTGGGAAGATGGAGTACTGATTACGATTGTGTGTGTTCTGGAGAAGATTCCGTGATCGTTGGTGGGTCAGAGTTCAGGTTCATATGCAAGTATTTTCCCATTAAAGGGATTCGAACCTGGTTGTCACGAGCTCGGTGGCTCCGCCGTGAAATCCACTCTAAGCTCTCCGATATCAATATCGTCGACGAACAGGAACTGAGGGCAGCTGTATCTAATATTGAACCCAAACATGAGAAAGAGATCAAGGATTTGATTAGCAGTTATAAGAGGTTGTACCCCAGATGGGCTTTTGATCTTAGGTGTGGTCTTGGTCTTCTCATGTATGGATTTGGATCTAAGAAGACTTTGCTTGAAGATTTTGCTTCAACATCCTTGACTGAGTATTCTGCGTTTGTTATCAATGGATATCTTCCAACAATAAATATAAAGCAGGTTTTGACATCCTTAGCTGAAGTTCTATGGGATCAATTGAAAATCAAACGAAGGACTCCTTCTAAAAGCTTGTCCAAAGATCAACAACCCTTTAGTTCTCGATCTGTGGAGGATCTTCTTGCATTTTTGGATGGATCAGAGGATAGGACAAGTGAATTTCTTGTATGTGTAATCATTCACAACATTGATGGGCCTGGATTAAGGGACTCTGAAATCCAGCAGTATCTTGCAAGAGTTGCTTCCTGTCCCAATATTCGTATTGTGGCCTCTATTGACCATGTGAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACTCAATTCAACTGGTGCTGGTATCATGTTCCTACCTTTGCGCCATACAAGATCGAAGGAACGTTCTTTCCCTTGATTCTAGCTCATGGCAATACCACCCAAACTGCCAAAAATGCTGTTATAGTTTTACAGAGTTTGACACCCAATGCCCAGGGCGTGTTCAAAATTCTTGCAGAATATCAACTATCTCACTCTGAAGAAGAAGGGATGCCAATTGATAATCTGTTTGCAACCTGTCGTGAACGCTTCCTCGTGGGCAGTCGGCCTATGCTCAACTCCCATTTGACTGAATTCAAAGATCATGAGTTGGTCAAAACAAGAAGGCATTCTGATGGCCAGGATTGCTTGTACATTCCTCTAACAAGTGAGGCACTTGAAAAACTACTAAGGGATTGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

389

Amino Acids

44.49

Weight (kDa)

7.15

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA-like_ORC2	PF04084	86 - 266	2.9e-53	Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2	PF24882	319 - 379	3.3e-20	ORC2 WHD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	1 cut(s)	160
AclI	AACGTT	1 cut(s)	830
AclWI	GGATC	4 cut(s)	358, 489, 570, 592
AcoI	YGGCCR	1 cut(s)	1102
AcsI	RAATTY	3 cut(s)	605, 933, 1058
AcuI	CTGAAG	2 cut(s)	489, 984
AfaI	GTAC	3 cut(s)	34, 293, 1118
AfiI	CCNNNNNNNGG	3 cut(s)	122, 123, 301
AgsI	TTSAA	8 cut(s)	239, 371, 384, 490, 778, 931, 1063, 1145
AjnI	CCWGG	4 cut(s)	134, 643, 918, 1104
AloI	GAACNNNNNNTCC	2 cut(s)	820, 852
AluBI	AGCT	6 cut(s)	149, 181, 224, 467, 519, 851
AluI	AGCT	6 cut(s)	149, 181, 224, 467, 519, 851
Alw21I	GWGCWC	1 cut(s)	151
AlwI	GGATC	4 cut(s)	358, 489, 570, 592
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	4 cut(s)	641, 714, 1031, 1102
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	3 cut(s)	605, 933, 1058
Asp700I	GAANNNNTTC	1 cut(s)	1093
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	1 cut(s)	641
AsuII	TTCGAA	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	1104
BanII	GRGCYC	1 cut(s)	151
BarI	GAAGNNNNNNTAC	2 cut(s)	16, 48
BauI	CACGAG	2 cut(s)	144, 1019
BbsI	GAAGAC	2 cut(s)	323, 365
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	7 cut(s)	3, 21, 294, 575, 632, 754, 1094
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	4 cut(s)	136, 645, 920, 1106
BfaI	CTAG	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	4 cut(s)	136, 645, 920, 1106
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	4 cut(s)	136, 645, 920, 1106
BmsI	GCATC	1 cut(s)	966
BpiI	GAAGAC	2 cut(s)	323, 365
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	463
Bpu14I	TTCGAA	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	349
BsaJI	CCNNGG	2 cut(s)	918, 919
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 123, 301
Bse1I	ACTGG	1 cut(s)	785
Bse8I	GATNNNNATC	1 cut(s)	349
BseBI	CCWGG	4 cut(s)	136, 645, 920, 1106
BseDI	CCNNGG	2 cut(s)	918, 919
BseGI	GGATG	5 cut(s)	14, 386, 458, 586, 981
BseJI	GATNNNNATC	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	122, 123, 301
BseMII	CTCAG	2 cut(s)	206, 387
BseNI	ACTGG	1 cut(s)	785
BseXI	GCAGC	1 cut(s)	233
BshFI	GGCC	4 cut(s)	643, 716, 1033, 1104
BsiHKAI	GWGCWC	1 cut(s)	151
BslFI	GGGAC	3 cut(s)	668, 681, 764
BslI	CCNNNNNNNGG	3 cut(s)	122, 123, 301
BsmFI	GGGAC	3 cut(s)	668, 681, 764
BsmI	GAATGC	2 cut(s)	739, 1093
BsnI	GGCC	4 cut(s)	643, 716, 1033, 1104
Bsp119I	TTCGAA	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	1116
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	4 cut(s)	643, 716, 1033, 1104
BspCNI	CTCAG	2 cut(s)	207, 388
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	4 cut(s)	358, 489, 570, 592
BspT104I	TTCGAA	1 cut(s)	130
BsrGI	TGTACA	1 cut(s)	1116
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	2 cut(s)	918, 919
BssSI	CACGAG	2 cut(s)	144, 1019
Bst2BI	CACGAG	2 cut(s)	144, 1019
Bst2UI	CCWGG	4 cut(s)	136, 645, 920, 1106
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	1116
BstBI	TTCGAA	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	7 cut(s)	177, 215, 314, 354, 396, 463, 1154
BstF5I	GGATG	5 cut(s)	14, 386, 458, 586, 981
BstHHI	GCGC	1 cut(s)	811
BstMWI	GCNNNNNNNGC	3 cut(s)	686, 881, 1110
BstNI	CCWGG	4 cut(s)	136, 645, 920, 1106
BstSCI	CCNGG	4 cut(s)	134, 643, 918, 1104
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	2 cut(s)	323, 365
BstX2I	RGATCY	2 cut(s)	350, 562
BstYI	RGATCY	2 cut(s)	350, 562
BsuRI	GGCC	4 cut(s)	643, 716, 1033, 1104
BtsCI	GGATG	5 cut(s)	14, 386, 458, 586, 981
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	15
CaiI	CAGNNNCTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	1069
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	641
CsiI	ACCWGGT	1 cut(s)	134
Csp6I	GTAC	3 cut(s)	33, 292, 1117
CviAII	CATG	6 cut(s)	248, 337, 728, 794, 854, 1070
CviQI	GTAC	3 cut(s)	33, 292, 1117
DdeI	CTNAG	7 cut(s)	177, 215, 314, 354, 396, 463, 1154
EaeI	YGGCCR	1 cut(s)	1102
EciI	GGCGGA	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco32I	GATATC	2 cut(s)	190, 425
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	489, 984
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	1058
EcoRII	CCWGG	4 cut(s)	134, 643, 918, 1104
EcoRV	GATATC	2 cut(s)	190, 425
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	6 cut(s)	251, 340, 731, 797, 857, 1073
FalI	AAGNNNNNCTT	4 cut(s)	493, 525, 673, 705
FaqI	GGGAC	3 cut(s)	668, 681, 764
FatI	CATG	6 cut(s)	247, 336, 727, 793, 853, 1069
FauNDI	CATATG	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	5 cut(s)	21, 373, 445, 593, 988
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	848
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	4 cut(s)	643, 716, 1033, 1104
HhaI	GCGC	1 cut(s)	811
Hin1II	CATG	6 cut(s)	251, 340, 731, 797, 857, 1073
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	5 cut(s)	65, 127, 505, 656, 844
Hpy166II	GTNNAC	3 cut(s)	202, 766, 1010
Hpy188I	TCNGA	6 cut(s)	88, 187, 589, 661, 964, 1099
Hpy188III	TCNNGA	5 cut(s)	57, 144, 549, 1007, 1070
Hpy8I	GTNNAC	3 cut(s)	202, 766, 1010
Hpy99I	CGWCG	2 cut(s)	203, 206
HpyAV	CCTTC	5 cut(s)	495, 519, 818, 965, 1083
HpyCH4IV	ACGT	1 cut(s)	830
HpyCH4V	TGCA	7 cut(s)	105, 572, 680, 737, 941, 998, 1166
HpyF10VI	GCNNNNNNNGC	3 cut(s)	686, 881, 1110
HpyF3I	CTNAG	7 cut(s)	177, 215, 314, 354, 396, 463, 1154
HpySE526I	ACGT	1 cut(s)	830
Hsp92II	CATG	6 cut(s)	251, 340, 731, 797, 857, 1073
HspAI	GCGC	1 cut(s)	809
LmnI	GCTCC	1 cut(s)	162
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	966
MabI	ACCWGGT	1 cut(s)	134
MaeI	CTAG	1 cut(s)	848
MaeII	ACGT	1 cut(s)	830
MaeIII	GTNAC	1 cut(s)	141
MfeI	CAATTG	2 cut(s)	485, 981
MflI	RGATCY	2 cut(s)	350, 562
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	1104
MluCI	AATT	6 cut(s)	485, 605, 773, 933, 981, 1058
MluNI	TGGCCA	1 cut(s)	1104
MlyI	GAGTC	2 cut(s)	499, 650
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	9 cut(s)	210, 279, 553, 583, 727, 750, 1028, 1129, 1134
Mox20I	TGGCCA	1 cut(s)	1104
MroXI	GAANNNNTTC	1 cut(s)	1093
MscI	TGGCCA	1 cut(s)	1104
MseI	TTAA	2 cut(s)	120, 650
MslI	CAYNNNNRTG	2 cut(s)	732, 1098
Msp20I	TGGCCA	1 cut(s)	1104
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	4 cut(s)	136, 645, 920, 1106
MunI	CAATTG	2 cut(s)	485, 981
Mva1269I	GAATGC	2 cut(s)	739, 1093
MvaI	CCWGG	4 cut(s)	136, 645, 920, 1106
MwoI	GCNNNNNNNGC	3 cut(s)	686, 881, 1110
NdeI	CATATG	1 cut(s)	101
NlaIII	CATG	6 cut(s)	251, 340, 731, 797, 857, 1073
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	141
NspV	TTCGAA	1 cut(s)	130
PagI	TCATGA	1 cut(s)	1069
PasI	CCCWGGG	1 cut(s)	919
PctI	GAATGC	2 cut(s)	739, 1093
PdmI	GAANNNNTTC	1 cut(s)	1093
PfeI	GAWTC	3 cut(s)	65, 127, 844
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	499, 650
PpsI	GAGTC	2 cut(s)	499, 650
PsiI	TTATAA	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	151
Psp1406I	AACGTT	1 cut(s)	830
Psp6I	CCWGG	4 cut(s)	134, 643, 918, 1104
PspGI	CCWGG	4 cut(s)	134, 643, 918, 1104
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	641
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	350, 562
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	3 cut(s)	34, 293, 1118
RsaNI	GTAC	3 cut(s)	33, 292, 1117
RseI	CAYNNNNRTG	2 cut(s)	732, 1098
SacI	GAGCTC	1 cut(s)	151
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	120, 650
SatI	GCNGC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	641
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	2 cut(s)	499, 650
ScrFI	CCNGG	4 cut(s)	136, 645, 920, 1106
SduI	GDGCHC	1 cut(s)	151
SexAI	ACCWGGT	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	966
SfuI	TTCGAA	1 cut(s)	130
SgrDI	CGTCGACG	1 cut(s)	200
SmiMI	CAYNNNNRTG	2 cut(s)	732, 1098
Sse9I	AATT	6 cut(s)	485, 605, 773, 933, 981, 1058
SsiI	CCGC	1 cut(s)	160
SspI	AATATT	2 cut(s)	235, 703
SspMI	CTAG	1 cut(s)	848
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	4 cut(s)	134, 643, 918, 1104
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	4 cut(s)	130, 201, 550, 822
TasI	AATT	6 cut(s)	485, 605, 773, 933, 981, 1058
TatI	WGTACW	2 cut(s)	32, 1116
TfiI	GAWTC	3 cut(s)	65, 127, 844
Tru1I	TTAA	2 cut(s)	120, 650
Tru9I	TTAA	2 cut(s)	120, 650
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	58
XapI	RAATTY	3 cut(s)	605, 933, 1058
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	1093
XspI	CTAG	1 cut(s)	848
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.