RLG00000010708

origin recognition complex subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
3773946 .. 3776689
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010708

Sequence Viewer

Length: 1254 bp
ATGGGCCACGCTGTGAGGTTCAGAAAGGCCCAATTGTCAGCCCAACCCTTTTTCCTCAGAGAGCGTAAAACCGCGGGAAAATCAGCACCTACAGAACTAACTAGGGCACCAATTCTTCTGAGTAGCGTTGGGGCTGTGGTCAAACTCAAAATCGAAGGGGCAATGGAGATGAACGATGCCGACGACGAAGAGTTTGGGTTCTCTAGAAACTACTTTCTGGCCAAGGAGCTCGGTGGCTCCGCCGTGAAATCCCACTCTAAGCTCTCCGATATCAATATCGTCGACGAACAGGAACTGAGGGCAGCTGTATCTAATATTGAACCCAAACATGAGAAAGAGATCAAGGATTTGATTAGCAGTTATAAGACGTTGTACCCCAGATGGGCTTTTGATCTTAGGTGTGGTCTTGGTCTTCTCATGTATGGATTTGGATCTAAGAAGACTTTGCTTGAAGATTTTGCTTCAACATCCTTGACCGAGTATTCTGCGTTTGTTATCAATGGATATCTTCCAACAATAAATATAAAGCAGGTTTTGACATCCTTAGCTGAAGTTCTATGGGATCAATTGAAAATCAAACGAATGACTCCTTCTAAGAGCTTGTCCAAAGATCAACAACCCTTTAGTTCTCGATCTGTGGAGGATCTTCTTGCATTTTTGGATGGATCAGAGGATAGGACAAGTGAATTTCTTGTATGTGTAATCATTCACAACATCGATGGGCCTGGATTAAGGGACTCTGAAATCCAGCAGTATCTTGCAAGAGTTGCTTCTTGTCCCAATATTCGTATTGTGGCCTCTATCGACCATGTGAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACTCAATTCAACTGGTGCTGGTATCATGTTCCTACCTTTGCGCCATACAAGATTGAAGGAACGTTCTTTCCCTTGATTCTAGCTCATGGCAATACCACCCAAACTACCAAAAATGCTGTTATAGTTTTACAGAGTTTGACACCCAATGCCCAGGGCGTGTTCAAAATTCTTGCAGAATATCAACTATCTCACTCTGAAGAAGAAGGGATGCCAATTGATAATCTGTTTGCAACCTGTCGCGAACGCTTCCTCGTGGGCAGCCGGCCTATGCTCAACTCCCATTTGACCGAATTCAAAGATCATGAGTTGGTCAAAACAAGAAGGCATTCTGATGGCCAGGATTGCTTGTACATTCCTCTAACAAGTGAGGCACTTGAAAAACTACTAGTGGAGATGACTCAGTAA

Protein Analysis

418

Amino Acids

47.04

Weight (kDa)

6.33

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RecA-like_ORC2 PF04084 113 - 293 6.4e-53 Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2 PF24882 346 - 406 3.6e-20 ORC2 WHD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011455)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 74, 1089
AciI CCGC 3 cut(s) 72, 74, 240
AclI AACGTT 1 cut(s) 911
AclWI GGATC 4 cut(s) 439, 570, 651, 673
AcoI YGGCCR 2 cut(s) 219, 1183
AcsI RAATTY 3 cut(s) 686, 1014, 1139
AcuI CTGAAG 2 cut(s) 570, 1065
AdeI CACNNNGTG 1 cut(s) 13
AfaI GTAC 2 cut(s) 374, 1199
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 9 cut(s) 320, 452, 465, 571, 859, 905, 1012, 1144, 1226
AhlI ACTAGT 1 cut(s) 1234
AjnI CCWGG 3 cut(s) 724, 999, 1185
AloI GAACNNNNNNTCC 2 cut(s) 901, 933
AluBI AGCT 6 cut(s) 229, 262, 305, 548, 600, 932
AluI AGCT 6 cut(s) 229, 262, 305, 548, 600, 932
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 4 cut(s) 439, 570, 651, 673
AlwNI CAGNNNCTG 1 cut(s) 295
AoxI GGCC 7 cut(s) 4, 27, 219, 722, 795, 1112, 1183
ApeKI GCWGC 2 cut(s) 302, 1107
ApoI RAATTY 3 cut(s) 686, 1014, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp700I GAANNNNTTC 1 cut(s) 1174
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 3 cut(s) 4, 28, 722
BaeGI GKGCMC 1 cut(s) 109
BalI TGGCCA 2 cut(s) 221, 1185
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 1100
BbsI GAAGAC 2 cut(s) 404, 446
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 314, 1119
BccI CCATC 5 cut(s) 375, 656, 713, 835, 1175
BceAI ACGGC 1 cut(s) 227
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 3 cut(s) 726, 1001, 1187
BcuI ACTAGT 1 cut(s) 1234
BfaI CTAG 4 cut(s) 102, 204, 929, 1235
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 520
BisI GCNGC 2 cut(s) 303, 1108
BlsI GCNGC 2 cut(s) 304, 1109
Bme1390I CCNGG 3 cut(s) 726, 1001, 1187
BmgT120I GGNCC 3 cut(s) 4, 28, 722
BmiI GGNNCC 2 cut(s) 108, 238
BmrFI CCNGG 3 cut(s) 726, 1001, 1187
BmsI GCATC 2 cut(s) 166, 1047
BpiI GAAGAC 2 cut(s) 404, 446
Bpu10I CCTNAGC 1 cut(s) 544
Bsa29I ATCGAT 1 cut(s) 717
BsaBI GATNNNNATC 1 cut(s) 430
BsaJI CCNNGG 4 cut(s) 72, 222, 999, 1000
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 1110
Bse1I ACTGG 1 cut(s) 866
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 430
BseBI CCWGG 3 cut(s) 726, 1001, 1187
BseCI ATCGAT 1 cut(s) 717
BseDI CCNNGG 4 cut(s) 72, 222, 999, 1000
BseGI GGATG 4 cut(s) 467, 539, 667, 1062
BseJI GATNNNNATC 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 3 cut(s) 70, 110, 287
BseNI ACTGG 1 cut(s) 866
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 2 cut(s) 314, 1119
Bsh1236I CGCG 2 cut(s) 74, 1089
BshFI GGCC 7 cut(s) 6, 29, 221, 724, 797, 1114, 1185
BshNI GGYRCC 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 717
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 1111
BslFI GGGAC 3 cut(s) 749, 762, 845
BslI CCNNNNNNNGG 1 cut(s) 382
BsmFI GGGAC 3 cut(s) 749, 762, 845
BsmI GAATGC 2 cut(s) 820, 1174
BsnI GGCC 7 cut(s) 6, 29, 221, 724, 797, 1114, 1185
Bsp1286I GDGCHC 2 cut(s) 109, 231
Bsp1407I TGTACA 1 cut(s) 1197
Bsp143I GATC 9 cut(s) 339, 391, 431, 562, 610, 632, 643, 665, 1147
Bsp68I TCGCGA 1 cut(s) 1089
BspACI CCGC 3 cut(s) 72, 74, 240
BspANI GGCC 7 cut(s) 6, 29, 221, 724, 797, 1114, 1185
BspCNI CTCAG 3 cut(s) 69, 111, 288
BspDI ATCGAT 1 cut(s) 717
BspFNI CGCG 2 cut(s) 74, 1089
BspHI TCATGA 1 cut(s) 1150
BspLI GGNNCC 2 cut(s) 108, 238
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 4 cut(s) 439, 570, 651, 673
BspT107I GGYRCC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 1110
BsrGI TGTACA 1 cut(s) 1197
BsrI ACTGG 1 cut(s) 866
BssAI RCCGGY 1 cut(s) 1110
BssECI CCNNGG 4 cut(s) 72, 222, 999, 1000
BssMI GATC 9 cut(s) 339, 391, 431, 562, 610, 632, 643, 665, 1147
BssSI CACGAG 1 cut(s) 1100
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 1100
Bst2UI CCWGG 3 cut(s) 726, 1001, 1187
Bst6I CTCTTC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 767
BstAUI TGTACA 1 cut(s) 1197
BstC8I GCNNGC 1 cut(s) 1112
BstDEI CTNAG 9 cut(s) 56, 119, 258, 296, 395, 435, 544, 594, 1248
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 4 cut(s) 467, 539, 667, 1062
BstFNI CGCG 2 cut(s) 74, 1089
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 9 cut(s) 342, 394, 434, 565, 613, 635, 646, 668, 1150
BstMBI GATC 9 cut(s) 339, 391, 431, 562, 610, 632, 643, 665, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 767, 1191
BstNI CCWGG 3 cut(s) 726, 1001, 1187
BstSCI CCNGG 3 cut(s) 724, 999, 1185
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 109
BstUI CGCG 2 cut(s) 74, 1089
BstV1I GCAGC 2 cut(s) 314, 1119
BstV2I GAAGAC 2 cut(s) 404, 446
BstX2I RGATCY 2 cut(s) 431, 643
BstYI RGATCY 2 cut(s) 431, 643
Bsu15I ATCGAT 1 cut(s) 717
BsuRI GGCC 7 cut(s) 6, 29, 221, 724, 797, 1114, 1185
BsuTUI ATCGAT 1 cut(s) 717
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 4 cut(s) 467, 539, 667, 1062
BtuMI TCGCGA 1 cut(s) 1089
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 1 cut(s) 1112
CaiI CAGNNNCTG 1 cut(s) 295
CciI TCATGA 1 cut(s) 1150
CfoI GCGC 1 cut(s) 892
Cfr10I RCCGGY 1 cut(s) 1110
Cfr13I GGNCC 3 cut(s) 4, 28, 722
Cfr42I CCGCGG 1 cut(s) 75
ClaI ATCGAT 1 cut(s) 717
Csp6I GTAC 2 cut(s) 373, 1198
CviAII CATG 6 cut(s) 329, 418, 809, 875, 935, 1151
CviQI GTAC 2 cut(s) 373, 1198
DdeI CTNAG 9 cut(s) 56, 119, 258, 296, 395, 435, 544, 594, 1248
DpnI GATC 9 cut(s) 341, 393, 433, 564, 612, 634, 645, 667, 1149
DpnII GATC 9 cut(s) 339, 391, 431, 562, 610, 632, 643, 665, 1147
DraIII CACNNNGTG 1 cut(s) 13
EaeI YGGCCR 2 cut(s) 219, 1183
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 2 cut(s) 271, 506
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 570, 1065
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 1139
EcoRII CCWGG 3 cut(s) 724, 999, 1185
EcoRV GATATC 2 cut(s) 271, 506
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 6 cut(s) 332, 421, 812, 878, 938, 1154
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FaqI GGGAC 3 cut(s) 749, 762, 845
FatI CATG 6 cut(s) 328, 417, 808, 874, 934, 1150
FauI CCCGC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 303, 1108
FokI GGATG 4 cut(s) 454, 526, 674, 1069
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 303, 1108
FspBI CTAG 4 cut(s) 102, 204, 929, 1235
GlaI GCGC 1 cut(s) 891
GluI GCNGC 2 cut(s) 303, 1108
HaeIII GGCC 7 cut(s) 6, 29, 221, 724, 797, 1114, 1185
HapII CCGG 1 cut(s) 1111
HhaI GCGC 1 cut(s) 892
Hin1II CATG 6 cut(s) 332, 421, 812, 878, 938, 1154
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 4 cut(s) 586, 737, 925, 1246
HpaII CCGG 1 cut(s) 1111
Hpy166II GTNNAC 2 cut(s) 283, 847
Hpy188I TCNGA 8 cut(s) 23, 59, 120, 268, 670, 742, 1045, 1180
Hpy188III TCNNGA 4 cut(s) 204, 630, 1088, 1151
Hpy8I GTNNAC 2 cut(s) 283, 847
Hpy99I CGWCG 4 cut(s) 185, 188, 284, 287
HpyAV CCTTC 5 cut(s) 149, 600, 899, 1046, 1164
HpyCH4IV ACGT 2 cut(s) 368, 911
HpyCH4V TGCA 5 cut(s) 653, 761, 818, 1022, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 767, 1191
HpyF3I CTNAG 9 cut(s) 56, 119, 258, 296, 395, 435, 544, 594, 1248
HpySE526I ACGT 2 cut(s) 368, 911
Hsp92II CATG 6 cut(s) 332, 421, 812, 878, 938, 1154
HspAI GCGC 1 cut(s) 890
KroI GCCGGC 1 cut(s) 1110
KroNI GCCGGC 1 cut(s) 1112
KspI CCGCGG 1 cut(s) 75
Kzo9I GATC 9 cut(s) 339, 391, 431, 562, 610, 632, 643, 665, 1147
LmnI GCTCC 2 cut(s) 226, 242
Lsp1109I GCAGC 2 cut(s) 314, 1119
LweI GCATC 2 cut(s) 166, 1047
MaeI CTAG 4 cut(s) 102, 204, 929, 1235
MaeII ACGT 2 cut(s) 368, 911
MalI GATC 9 cut(s) 341, 393, 433, 564, 612, 634, 645, 667, 1149
MboI GATC 9 cut(s) 339, 391, 431, 562, 610, 632, 643, 665, 1147
MfeI CAATTG 3 cut(s) 32, 566, 1062
MflI RGATCY 2 cut(s) 431, 643
MhlI GDGCHC 2 cut(s) 109, 231
MlsI TGGCCA 2 cut(s) 221, 1185
MluCI AATT 8 cut(s) 32, 111, 566, 686, 854, 1014, 1062, 1139
MluNI TGGCCA 2 cut(s) 221, 1185
MlyI GAGTC 3 cut(s) 580, 731, 1240
MmeI TCCRAC 1 cut(s) 536
Mox20I TGGCCA 2 cut(s) 221, 1185
MroNI GCCGGC 1 cut(s) 1110
MroXI GAANNNNTTC 1 cut(s) 1174
MscI TGGCCA 2 cut(s) 221, 1185
MseI TTAA 1 cut(s) 731
MslI CAYNNNNRTG 2 cut(s) 813, 1179
Msp20I TGGCCA 2 cut(s) 221, 1185
MspA1I CMGCKG 2 cut(s) 74, 305
MspI CCGG 1 cut(s) 1111
MspR9I CCNGG 3 cut(s) 726, 1001, 1187
MunI CAATTG 3 cut(s) 32, 566, 1062
Mva1269I GAATGC 2 cut(s) 820, 1174
MvaI CCWGG 3 cut(s) 726, 1001, 1187
MvnI CGCG 2 cut(s) 74, 1089
MwoI GCNNNNNNNGC 2 cut(s) 767, 1191
NaeI GCCGGC 1 cut(s) 1112
NdeII GATC 9 cut(s) 339, 391, 431, 562, 610, 632, 643, 665, 1147
NgoMIV GCCGGC 1 cut(s) 1110
NlaIII CATG 6 cut(s) 332, 421, 812, 878, 938, 1154
NlaIV GGNNCC 2 cut(s) 108, 238
NruI TCGCGA 1 cut(s) 1089
PagI TCATGA 1 cut(s) 1150
PasI CCCWGGG 1 cut(s) 1000
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 2 cut(s) 820, 1174
PdiI GCCGGC 1 cut(s) 1112
PdmI GAANNNNTTC 1 cut(s) 1174
PfeI GAWTC 1 cut(s) 925
PkrI GCNGC 2 cut(s) 304, 1109
PleI GAGTC 3 cut(s) 580, 731, 1240
PpsI GAGTC 3 cut(s) 580, 731, 1240
PsiI TTATAA 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 911
Psp6I CCWGG 3 cut(s) 724, 999, 1185
PspGI CCWGG 3 cut(s) 724, 999, 1185
PspN4I GGNNCC 2 cut(s) 108, 238
PspPI GGNCC 3 cut(s) 4, 28, 722
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 2 cut(s) 431, 643
PvuII CAGCTG 1 cut(s) 305
RruI TCGCGA 1 cut(s) 1089
RsaI GTAC 2 cut(s) 374, 1199
RsaNI GTAC 2 cut(s) 373, 1198
RseI CAYNNNNRTG 2 cut(s) 813, 1179
SacI GAGCTC 1 cut(s) 231
SacII CCGCGG 1 cut(s) 75
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 731
SatI GCNGC 2 cut(s) 303, 1108
Sau3AI GATC 9 cut(s) 339, 391, 431, 562, 610, 632, 643, 665, 1147
Sau96I GGNCC 3 cut(s) 4, 28, 722
SchI GAGTC 3 cut(s) 580, 731, 1240
ScrFI CCNGG 3 cut(s) 726, 1001, 1187
SduI GDGCHC 2 cut(s) 109, 231
SfaNI GCATC 2 cut(s) 166, 1047
SfcI CTRYAG 1 cut(s) 90
Sfr303I CCGCGG 1 cut(s) 75
SgrBI CCGCGG 1 cut(s) 75
SgrDI CGTCGACG 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 813, 1179
SpeI ACTAGT 1 cut(s) 1234
Sse9I AATT 8 cut(s) 32, 111, 566, 686, 854, 1014, 1062, 1139
SsiI CCGC 3 cut(s) 72, 74, 240
SspI AATATT 2 cut(s) 316, 784
SspMI CTAG 4 cut(s) 102, 204, 929, 1235
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 724, 999, 1185
StyI CCWWGG 1 cut(s) 222
TaiI ACGT 2 cut(s) 371, 914
TaqI TCGA 5 cut(s) 153, 282, 631, 717, 804
TaqII GACCGA 2 cut(s) 491, 1151
TasI AATT 8 cut(s) 32, 111, 566, 686, 854, 1014, 1062, 1139
TatI WGTACW 1 cut(s) 1197
TfiI GAWTC 1 cut(s) 925
Tru1I TTAA 1 cut(s) 731
Tru9I TTAA 1 cut(s) 731
TseI GCWGC 2 cut(s) 302, 1107
TspDTI ATGAA 1 cut(s) 185
XapI RAATTY 3 cut(s) 686, 1014, 1139
XbaI TCTAGA 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 1174
XspI CTAG 4 cut(s) 102, 204, 929, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.