Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Reverse (-)

8744828 .. 8747201

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1103300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAGATGAACGACGGCGAGAACGAAGAGTTTGGGTTCTCCAGAAACTACTTTCTGGCAAAGGAGCTCCGCGGCTCTGGCAAGAAATCGCAATCTAAGCTCTCGGATATCGATATCGTCGATGAACAGGAACTGGTTGCGGCGGCGGCTCAAATCGAACCCAAACATGAGAAAGAGGTGAAGGATTTGATGAACAGTTACAAGAGTTCATATCCAGAATGGGCTTTTGAACTGAGATGTGGTCTTGGCCTTCTTATGTATGGATTTGGATCTAAGAAGGCCTTGCTTGAAGATTTTGCTTCAACATCGTTGACGGATTATTCTGTGCTTGTTGTCAACGGCTATCTTCAGGGAATAAATATAAAACAGGTTGTGGTAGCCTTAGCTGAACTTCTGTGGGATCAATTGAAAACCAAAAGGACTCCTTCTAGAAGCTCGTCAAAAGTGCAACAACCATTTAGTTCTAGGTCCATGGATGATCTTCTTGCATTTTTGGATGGATCGGAAGATACAACAAACGAATGTATAGTATGTGTTGTCATTCACAACATTGATGGACCTGGATTAAGGGACTCAGAAACCCAACAGTGTCTTGCACGAGTTGCTTCTTGTTCTCATATTCGCATTGTGGCCTCTATCGATCATGTCAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACACAATTCAACTGGTGCTGGCATCACGTTCCTACCTTTGCCCCATACAAGGTCGAAGGAATGCTCATTCCACTGATTCTTGCACATGGAAATACCACCCAAAGTGCCAAAGGTGCTACAATAGTTTTGCAGAGTTTGACATCCAATGCTCAGAGTGTGTTCAAAGTTCTTGCAGAATATCAACTATCCCACTCGAACGAAGAAGGGATGCCGATTGATAATCTGTACGCAACCTGTCGAGAGCGGTTCCTCGTGAGCAGCCAGCTTACGCTCAACTCCCATTTGACGGAATTCAAAGATCATGAATTGGTGAAGACCAAAAGGAATTCTGATGGCCAGGATTGCTTGCACATCCCTCTCACAAATGAGGCACTTGAAAAACTGCTAGCAGACCTGAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

363

Amino Acids

40.53

Weight (kDa)

5.49

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA-like_ORC2	PF04084	60 - 238	3.1e-54	Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2	PF24882	292 - 351	4.8e-23	ORC2 WHD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	928
AccII	CGCG	1 cut(s)	72
AciI	CCGC	6 cut(s)	70, 72, 140, 143, 146, 928
AclWI	GGATC	3 cut(s)	277, 408, 508
AcoI	YGGCCR	1 cut(s)	1018
AcsI	RAATTY	2 cut(s)	974, 1009
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	911
AfiI	CCNNNNNNNGG	2 cut(s)	733, 970
AgsI	TTSAA	8 cut(s)	230, 290, 303, 409, 694, 847, 979, 1061
AjnI	CCWGG	2 cut(s)	559, 1020
AluBI	AGCT	5 cut(s)	67, 100, 386, 435, 949
AluI	AGCT	5 cut(s)	67, 100, 386, 435, 949
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	3 cut(s)	277, 408, 508
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	4 cut(s)	247, 279, 630, 1018
ApeKI	GCWGC	1 cut(s)	942
ApoI	RAATTY	2 cut(s)	974, 1009
AspS9I	GGNCC	2 cut(s)	468, 557
AsuHPI	GGTGA	2 cut(s)	190, 1006
AsuNHI	GCTAGC	1 cut(s)	1069
AvaII	GGWCC	2 cut(s)	468, 557
BalI	TGGCCA	1 cut(s)	1020
BanII	GRGCYC	1 cut(s)	69
BauI	CACGAG	2 cut(s)	597, 935
BbsI	GAAGAC	1 cut(s)	1004
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	954
BccI	CCATC	4 cut(s)	491, 548, 670, 1010
BceAI	ACGGC	2 cut(s)	31, 355
BciT130I	CCWGG	2 cut(s)	561, 1022
BfaI	CTAG	3 cut(s)	429, 465, 1070
BisI	GCNGC	5 cut(s)	73, 141, 144, 147, 943
BlsI	GCNGC	5 cut(s)	74, 142, 145, 148, 944
Bme1390I	CCNGG	2 cut(s)	561, 1022
Bme18I	GGWCC	2 cut(s)	468, 557
BmgT120I	GGNCC	2 cut(s)	468, 557
BmiI	GGNNCC	1 cut(s)	932
BmrFI	CCNGG	2 cut(s)	561, 1022
BmsI	GCATC	2 cut(s)	715, 882
BmtI	GCTAGC	1 cut(s)	1073
BoxI	GACNNNNGTC	1 cut(s)	1080
BpiI	GAAGAC	1 cut(s)	1004
BpmI	CTGGAG	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	382
Bsa29I	ATCGAT	2 cut(s)	111, 639
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	70, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	733, 970
Bse1I	ACTGG	2 cut(s)	138, 701
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	561, 1022
BseCI	ATCGAT	2 cut(s)	111, 639
BseDI	CCNNGG	2 cut(s)	70, 471
BseGI	GGATG	5 cut(s)	481, 502, 824, 897, 1035
BseJI	GATNNNNATC	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	733, 970
BseMII	CTCAG	4 cut(s)	224, 588, 848, 1070
BseNI	ACTGG	2 cut(s)	138, 701
BseXI	GCAGC	1 cut(s)	954
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	249, 281, 632, 1020
BshVI	ATCGAT	2 cut(s)	111, 639
BsiHKAI	GWGCWC	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	584, 680
BslI	CCNNNNNNNGG	2 cut(s)	733, 970
BsmFI	GGGAC	2 cut(s)	584, 680
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	4 cut(s)	249, 281, 632, 1020
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	6 cut(s)	269, 400, 478, 500, 640, 982
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	6 cut(s)	70, 72, 140, 143, 146, 928
BspANI	GGCC	4 cut(s)	249, 281, 632, 1020
BspCNI	CTCAG	4 cut(s)	225, 587, 847, 1071
BspDI	ATCGAT	2 cut(s)	111, 639
BspFNI	CGCG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	1 cut(s)	932
BspOI	GCTAGC	1 cut(s)	1073
BspPI	GGATC	3 cut(s)	277, 408, 508
BsrBI	CCGCTC	1 cut(s)	928
BsrI	ACTGG	2 cut(s)	138, 701
BssECI	CCNNGG	2 cut(s)	70, 471
BssMI	GATC	6 cut(s)	269, 400, 478, 500, 640, 982
BssSI	CACGAG	2 cut(s)	597, 935
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	2 cut(s)	597, 935
Bst2UI	CCWGG	2 cut(s)	561, 1022
Bst4CI	ACNGT	2 cut(s)	197, 588
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstC8I	GCNNGC	4 cut(s)	704, 947, 1031, 1071
BstDEI	CTNAG	7 cut(s)	96, 233, 273, 382, 574, 834, 1079
BstDSI	CCRYGG	2 cut(s)	70, 471
BstF5I	GGATG	5 cut(s)	481, 502, 824, 897, 1035
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	6 cut(s)	272, 403, 481, 503, 643, 985
BstMBI	GATC	6 cut(s)	269, 400, 478, 500, 640, 982
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 97, 146, 602, 797, 1026
BstNI	CCWGG	2 cut(s)	561, 1022
BstPAI	GACNNNNGTC	1 cut(s)	1080
BstSCI	CCNGG	2 cut(s)	559, 1020
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	954
BstV2I	GAAGAC	1 cut(s)	1004
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
Bsu15I	ATCGAT	2 cut(s)	111, 639
BsuRI	GGCC	4 cut(s)	249, 281, 632, 1020
BsuTUI	ATCGAT	2 cut(s)	111, 639
BtgI	CCRYGG	2 cut(s)	70, 471
BtsCI	GGATG	5 cut(s)	481, 502, 824, 897, 1035
BtsIMutI	CAGTG	2 cut(s)	593, 755
Cac8I	GCNNGC	4 cut(s)	704, 947, 1031, 1071
CaiI	CAGNNNCTG	1 cut(s)	133
CciI	TCATGA	1 cut(s)	985
Cfr13I	GGNCC	2 cut(s)	468, 557
Cfr42I	CCGCGG	1 cut(s)	73
ClaI	ATCGAT	2 cut(s)	111, 639
Csp6I	GTAC	1 cut(s)	910
CviAII	CATG	5 cut(s)	167, 472, 644, 770, 986
CviQI	GTAC	1 cut(s)	910
DdeI	CTNAG	7 cut(s)	96, 233, 273, 382, 574, 834, 1079
DpnI	GATC	6 cut(s)	271, 402, 480, 502, 642, 984
DpnII	GATC	6 cut(s)	269, 400, 478, 500, 640, 982
EaeI	YGGCCR	1 cut(s)	1018
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	69
Eco32I	GATATC	2 cut(s)	109, 115
Eco47I	GGWCC	2 cut(s)	468, 557
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	67
EcoRI	GAATTC	2 cut(s)	974, 1009
EcoRII	CCWGG	2 cut(s)	559, 1020
EcoRV	GATATC	2 cut(s)	109, 115
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	5 cut(s)	170, 475, 647, 773, 989
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 409, 441
FaqI	GGGAC	2 cut(s)	584, 680
FatI	CATG	5 cut(s)	166, 471, 643, 769, 985
Fnu4HI	GCNGC	5 cut(s)	73, 141, 144, 147, 943
FokI	GGATG	5 cut(s)	488, 509, 811, 904, 1022
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	5 cut(s)	73, 141, 144, 147, 943
FspBI	CTAG	3 cut(s)	429, 465, 1070
GluI	GCNGC	5 cut(s)	73, 141, 144, 147, 943
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	4 cut(s)	249, 281, 632, 1020
Hin1II	CATG	5 cut(s)	170, 475, 647, 773, 989
HincII	GTYRAC	2 cut(s)	312, 337
HindII	GTYRAC	2 cut(s)	312, 337
HinfI	GANTC	4 cut(s)	421, 572, 760, 1081
HphI	GGTGA	2 cut(s)	190, 1006
Hpy166II	GTNNAC	3 cut(s)	312, 337, 682
Hpy188I	TCNGA	5 cut(s)	106, 505, 577, 837, 1015
Hpy188III	TCNNGA	6 cut(s)	42, 215, 429, 923, 937, 986
Hpy8I	GTNNAC	3 cut(s)	312, 337, 682
Hpy99I	CGWCG	2 cut(s)	17, 122
HpyAV	CCTTC	6 cut(s)	175, 260, 271, 435, 734, 881
HpyCH4III	ACNGT	2 cut(s)	197, 588
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	8 cut(s)	448, 488, 596, 653, 767, 814, 857, 1033
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 97, 146, 602, 797, 1026
HpyF3I	CTNAG	7 cut(s)	96, 233, 273, 382, 574, 834, 1079
HpySE526I	ACGT	1 cut(s)	711
Hsp92II	CATG	5 cut(s)	170, 475, 647, 773, 989
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	269, 400, 478, 500, 640, 982
LmnI	GCTCC	2 cut(s)	64, 72
Lsp1109I	GCAGC	1 cut(s)	954
LweI	GCATC	2 cut(s)	715, 882
MaeI	CTAG	3 cut(s)	429, 465, 1070
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	6 cut(s)	271, 402, 480, 502, 642, 984
MbiI	CCGCTC	1 cut(s)	928
MboI	GATC	6 cut(s)	269, 400, 478, 500, 640, 982
MboII	GAAGA	8 cut(s)	38, 302, 338, 473, 518, 685, 896, 1009
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	1020
MluCI	AATT	5 cut(s)	404, 689, 974, 989, 1009
MluNI	TGGCCA	1 cut(s)	1020
MlyI	GAGTC	2 cut(s)	415, 566
MnlI	CCTC	6 cut(s)	169, 643, 666, 944, 1045, 1050
Mox20I	TGGCCA	1 cut(s)	1020
MscI	TGGCCA	1 cut(s)	1020
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	648
Msp20I	TGGCCA	1 cut(s)	1020
MspA1I	CMGCKG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	561, 1022
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	2 cut(s)	561, 1022
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	6 cut(s)	78, 97, 146, 602, 797, 1026
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	6 cut(s)	269, 400, 478, 500, 640, 982
NheI	GCTAGC	1 cut(s)	1069
NlaIII	CATG	5 cut(s)	170, 475, 647, 773, 989
NlaIV	GGNNCC	1 cut(s)	932
PagI	TCATGA	1 cut(s)	985
PceI	AGGCCT	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 117
PctI	GAATGC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	760
PkrI	GCNGC	5 cut(s)	74, 142, 145, 148, 944
PleI	GAGTC	2 cut(s)	415, 566
PpsI	GAGTC	2 cut(s)	415, 566
PshAI	GACNNNNGTC	1 cut(s)	1080
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	559, 1020
PspGI	CCWGG	2 cut(s)	559, 1020
PspN4I	GGNNCC	1 cut(s)	932
PspPI	GGNCC	2 cut(s)	468, 557
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	911
RsaNI	GTAC	1 cut(s)	910
RseI	CAYNNNNRTG	1 cut(s)	648
SacI	GAGCTC	1 cut(s)	69
SacII	CCGCGG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	5 cut(s)	73, 141, 144, 147, 943
Sau3AI	GATC	6 cut(s)	269, 400, 478, 500, 640, 982
Sau96I	GGNCC	2 cut(s)	468, 557
SchI	GAGTC	2 cut(s)	415, 566
ScrFI	CCNGG	2 cut(s)	561, 1022
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	2 cut(s)	715, 882
Sfr303I	CCGCGG	1 cut(s)	73
SgrBI	CCGCGG	1 cut(s)	73
SinI	GGWCC	2 cut(s)	468, 557
SmiMI	CAYNNNNRTG	1 cut(s)	648
Sse9I	AATT	5 cut(s)	404, 689, 974, 989, 1009
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	6 cut(s)	70, 72, 140, 143, 146, 928
SspMI	CTAG	3 cut(s)	429, 465, 1070
SstI	GAGCTC	1 cut(s)	69
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	559, 1020
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	197, 588
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	7 cut(s)	111, 120, 156, 639, 738, 878, 922
TasI	AATT	5 cut(s)	404, 689, 974, 989, 1009
TauI	GCSGC	4 cut(s)	75, 143, 146, 149
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	2 cut(s)	593, 762
TseI	GCWGC	1 cut(s)	942
TspDTI	ATGAA	5 cut(s)	23, 138, 198, 206, 1002
TspGWI	ACGGA	2 cut(s)	329, 986
TspRI	CASTG	2 cut(s)	593, 762
VpaK11BI	GGWCC	2 cut(s)	468, 557
XapI	RAATTY	2 cut(s)	974, 1009
XbaI	TCTAGA	1 cut(s)	428
XspI	CTAG	3 cut(s)	429, 465, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.