Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Forward (+)

65861306 .. 65864270

Gene Structure 2965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27648

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGAATGAACGATGCCGACGACGAAGAGTTTGGTTCTCTAGAAACTACTTTCTGGCGAAGGAGCTCGGTGGCTCCGCCGTGAAATCCCACTCTAAGCTCTCCGATATCAATATCGTCGACGAACAGATCAAGGATTTGATTAGCAGTTATAAGAGGTTGTACCCCAGATGGGCTTTTGATCTTAGGTATGTATCTAATGTTGGTGGTGTGGTCTTGTCTTCTATGTATGGATTTGGATCGAAGAAGACTTTGCTTGAAGATTTTGCTTCAACATCCTTGACCGAGTATTCTGCGTTTGTTATCAATGGATATCTTCCAACAATAAATATAAAGCAGTATCTTGCAAGAGTTGCTTCTTGTCCCAATATTCGTATTGTGGCCTCTATCGATCATGTGAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACTCAATTCAACTGGTGCTGGTATCATGTTCCTACCTTTGCGCCATACAAGATCGAAGGAACGTTCTTTCCCTTGATTCTAGCTCATGGCAATACCACCCAAACTGCCAAAAATGCTGTTATAGTTTTACAGAGTTTGACACCCAATGCCCAGGGCGTGTTCAAAATTCTTGCAGAATATCAACTGTCTCACTCTGAAGAAGAAGGGATGCCAATTGATAATCTGTTTGCAACCTGTCGCGAACGCTTCCTTGTGGGCAGCCGGCCTATGCTCAACTCCCATTTGACCGAATTCAAAGATCATGAGTTGGTCAAAACAAGAAGGCATTCTGATGGCCAGGATTGCTTGTACATTCCTCTAACAAGTGAGGCACTTGAAAAACTACTAGTGGAGATGACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

279

Amino Acids

31.99

Weight (kDa)

8.7

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA-like_ORC2	PF04084	44 - 119	4e-14	Origin recognition complex subunit 2 RecA-like domain
RecA-like_ORC2	PF04084	112 - 155	3.5e-14	Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2	PF24882	208 - 268	1.9e-20	ORC2 WHD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	675
AciI	CCGC	1 cut(s)	78
AclI	AACGTT	1 cut(s)	497
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	2 cut(s)	600, 725
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	2 cut(s)	164, 785
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	6 cut(s)	260, 273, 445, 598, 730, 812
AhlI	ACTAGT	1 cut(s)	820
AjnI	CCWGG	2 cut(s)	585, 771
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	3 cut(s)	67, 100, 518
AluI	AGCT	3 cut(s)	67, 100, 518
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	627
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	3 cut(s)	381, 698, 769
ApeKI	GCWGC	1 cut(s)	693
ApoI	RAATTY	2 cut(s)	600, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	771
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	2 cut(s)	213, 254
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	3 cut(s)	165, 421, 761
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	2 cut(s)	587, 773
BcoDI	GTCTC	1 cut(s)	627
BcuI	ACTAGT	1 cut(s)	820
BfaI	CTAG	3 cut(s)	42, 515, 821
BisI	GCNGC	1 cut(s)	694
BlsI	GCNGC	1 cut(s)	695
Bme1390I	CCNGG	2 cut(s)	587, 773
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	587, 773
BmsI	GCATC	2 cut(s)	5, 633
BpiI	GAAGAC	2 cut(s)	213, 254
Bsa29I	ATCGAT	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	585, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	696
Bse1I	ACTGG	1 cut(s)	452
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	587, 773
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	585, 586
BseGI	GGATG	2 cut(s)	275, 648
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	3 cut(s)	383, 700, 771
BshVI	ATCGAT	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	697
BslFI	GGGAC	2 cut(s)	348, 431
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	627
BsmFI	GGGAC	2 cut(s)	348, 431
BsmI	GAATGC	2 cut(s)	406, 760
BsnI	GGCC	3 cut(s)	383, 700, 771
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	6 cut(s)	129, 181, 239, 391, 486, 733
Bsp68I	TCGCGA	1 cut(s)	675
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	3 cut(s)	383, 700, 771
BspDI	ATCGAT	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	696
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	696
BssECI	CCNNGG	2 cut(s)	585, 586
BssMI	GATC	6 cut(s)	129, 181, 239, 391, 486, 733
Bst2UI	CCWGG	2 cut(s)	587, 773
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	783
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	3 cut(s)	96, 185, 834
BstF5I	GGATG	2 cut(s)	275, 648
BstFNI	CGCG	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	6 cut(s)	132, 184, 242, 394, 489, 736
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	6 cut(s)	129, 181, 239, 391, 486, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	353, 548, 777
BstNI	CCWGG	2 cut(s)	587, 773
BstSCI	CCNGG	2 cut(s)	585, 771
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	1 cut(s)	705
BstV2I	GAAGAC	2 cut(s)	213, 254
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	383, 700, 771
BsuTUI	ATCGAT	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	275, 648
BtuMI	TCGCGA	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	698
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	696
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	163, 784
CviAII	CATG	4 cut(s)	395, 461, 521, 737
CviJI	RGCY	9 cut(s)	67, 75, 100, 176, 383, 518, 696, 700, 771
CviKI_1	RGCY	9 cut(s)	67, 75, 100, 176, 383, 518, 696, 700, 771
CviQI	GTAC	2 cut(s)	163, 784
DdeI	CTNAG	3 cut(s)	96, 185, 834
DpnI	GATC	6 cut(s)	131, 183, 241, 393, 488, 735
DpnII	GATC	6 cut(s)	129, 181, 239, 391, 486, 733
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco32I	GATATC	2 cut(s)	109, 314
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	585, 771
EcoRV	GATATC	2 cut(s)	109, 314
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	4 cut(s)	398, 464, 524, 740
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FaqI	GGGAC	2 cut(s)	348, 431
FatI	CATG	4 cut(s)	394, 460, 520, 736
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	694
FokI	GGATG	2 cut(s)	262, 655
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	694
FspBI	CTAG	3 cut(s)	42, 515, 821
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	694
HaeIII	GGCC	3 cut(s)	383, 700, 771
HapII	CCGG	1 cut(s)	697
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	398, 464, 524, 740
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	511, 832
HpaII	CCGG	1 cut(s)	697
Hpy166II	GTNNAC	2 cut(s)	121, 433
Hpy188I	TCNGA	3 cut(s)	106, 631, 766
Hpy188III	TCNNGA	3 cut(s)	42, 674, 737
Hpy8I	GTNNAC	2 cut(s)	121, 433
Hpy99I	CGWCG	4 cut(s)	24, 27, 122, 125
HpyAV	CCTTC	4 cut(s)	55, 485, 632, 750
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	4 cut(s)	347, 404, 608, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	353, 548, 777
HpyF3I	CTNAG	3 cut(s)	96, 185, 834
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	4 cut(s)	398, 464, 524, 740
HspAI	GCGC	1 cut(s)	476
KroI	GCCGGC	1 cut(s)	696
KroNI	GCCGGC	1 cut(s)	698
Kzo9I	GATC	6 cut(s)	129, 181, 239, 391, 486, 733
LmnI	GCTCC	2 cut(s)	64, 80
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	2 cut(s)	5, 633
MaeI	CTAG	3 cut(s)	42, 515, 821
MaeII	ACGT	1 cut(s)	497
MalI	GATC	6 cut(s)	131, 183, 241, 393, 488, 735
MboI	GATC	6 cut(s)	129, 181, 239, 391, 486, 733
MboII	GAAGA	9 cut(s)	39, 213, 256, 259, 272, 308, 436, 644, 647
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	771
MluCI	AATT	4 cut(s)	440, 600, 648, 725
MluNI	TGGCCA	1 cut(s)	771
MlyI	GAGTC	1 cut(s)	826
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	150, 394, 417, 796, 801
Mox20I	TGGCCA	1 cut(s)	771
MroNI	GCCGGC	1 cut(s)	696
MroXI	GAANNNNTTC	1 cut(s)	760
MscI	TGGCCA	1 cut(s)	771
MslI	CAYNNNNRTG	2 cut(s)	399, 765
Msp20I	TGGCCA	1 cut(s)	771
MspI	CCGG	1 cut(s)	697
MspR9I	CCNGG	2 cut(s)	587, 773
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	2 cut(s)	406, 760
MvaI	CCWGG	2 cut(s)	587, 773
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	3 cut(s)	353, 548, 777
NaeI	GCCGGC	1 cut(s)	698
NdeII	GATC	6 cut(s)	129, 181, 239, 391, 486, 733
NgoMIV	GCCGGC	1 cut(s)	696
NlaIII	CATG	4 cut(s)	398, 464, 524, 740
NlaIV	GGNNCC	1 cut(s)	76
NruI	TCGCGA	1 cut(s)	675
PagI	TCATGA	1 cut(s)	736
PasI	CCCWGGG	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PctI	GAATGC	2 cut(s)	406, 760
PdiI	GCCGGC	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	760
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	695
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
PsiI	TTATAA	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	585, 771
PspGI	CCWGG	2 cut(s)	585, 771
PspN4I	GGNNCC	1 cut(s)	76
RruI	TCGCGA	1 cut(s)	675
RsaI	GTAC	2 cut(s)	164, 785
RsaNI	GTAC	2 cut(s)	163, 784
RseI	CAYNNNNRTG	2 cut(s)	399, 765
SacI	GAGCTC	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	119
SatI	GCNGC	1 cut(s)	694
Sau3AI	GATC	6 cut(s)	129, 181, 239, 391, 486, 733
SchI	GAGTC	1 cut(s)	826
ScrFI	CCNGG	2 cut(s)	587, 773
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	9 cut(s)	69, 102, 161, 191, 409, 473, 500, 520, 671
SfaNI	GCATC	2 cut(s)	5, 633
SgrDI	CGTCGACG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	399, 765
SpeI	ACTAGT	1 cut(s)	820
Sse9I	AATT	4 cut(s)	440, 600, 648, 725
SsiI	CCGC	1 cut(s)	78
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	3 cut(s)	42, 515, 821
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	585, 771
TaaI	ACNGT	1 cut(s)	621
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	4 cut(s)	120, 242, 390, 489
TaqII	GACCGA	2 cut(s)	299, 737
TasI	AATT	4 cut(s)	440, 600, 648, 725
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	693
TspDTI	ATGAA	1 cut(s)	24
XapI	RAATTY	2 cut(s)	600, 725
XbaI	TCTAGA	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	760
XspI	CTAG	3 cut(s)	42, 515, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.