Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Forward (+)

68601169 .. 68605668

Gene Structure 4500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG479600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTAATGCAGCAAACGATGAGAGTGGTCTTCTTGTGTGGTCTTGGTCTTCTCATGTATGGATTTGGATCTAAGAAGACTTTGCTTGAAGATTTTGCTTCAACATCCTTGACCGAGTATTCTGCGTTTGTTATCAATGGATATCTTCCAACAATAAATATAAAGCAGGTTTTGACATCCTTAGCTGAAGTTCTATGGGATCAATTGAAAATCAAACGCAGGACTCCTTCTAAGAGCTTGTCCAAAGATCAACAACCCTTTAGTTCTCGATCTGTGGAGGATCTTCTTGCATTTTTGGATGGATCAGAGGATAGGACAAGTGAATTTCTTGTATGTGTAATCATTCACAACATTGATGGGCCTGGATTAAGGGACTCTGAAATCCAGCAGTATCTTGCAAGAGTTGCTTCTTGTCCCAATATTCGTATTGTGGCCTCTATCGACCATGTGAATGCACCTCTTTTGTGGGACAAGAAGATGGTTCACACTCAATTCAACTGGTGCTGGTATCATGTTCCTACCTTTGCGCCATACAAGATCGAAGGAACGTTCTTTCCCTTGATTCTAGCTCATGGCAATACCACCCAAACTGCCAAAAATGCTGTTATAGTTTTACAGAGTTTGACACCCAATGCCCAGGGCGTGTTCAAAATTCTTGCAGAATATCAACTGTCTCACTCTGAAGAAGAAGGGATGCCAATTGATAATCTGTTTGCAACCTGTCGCGAACGCTTCCTCGTGGGCAGCCGGCCTATGCTCAACTCCCATTTGACCGAATTCAAAGATCATGAGTTGGTCAAAACAAGAAGGCATTCTGATGGCCAGGATTGCTTGTACATTCCTCTAACAAGTGAGGCACTTGAAAAACTACTAGTGGAGATGACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

296

Amino Acids

33.57

Weight (kDa)

6.14

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA-like_ORC2	PF04084	11 - 172	1.6e-46	Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2	PF24882	225 - 285	2.1e-20	ORC2 WHD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccII	CGCG	1 cut(s)	726
AclI	AACGTT	1 cut(s)	548
AclWI	GGATC	4 cut(s)	76, 207, 288, 310
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	3 cut(s)	323, 651, 776
AcuI	CTGAAG	2 cut(s)	207, 702
AfaI	GTAC	1 cut(s)	836
AgsI	TTSAA	7 cut(s)	89, 102, 208, 496, 649, 781, 863
AhlI	ACTAGT	1 cut(s)	871
AjnI	CCWGG	3 cut(s)	361, 636, 822
AloI	GAACNNNNNNTCC	2 cut(s)	538, 570
AluBI	AGCT	3 cut(s)	185, 237, 569
AluI	AGCT	3 cut(s)	185, 237, 569
Alw26I	GTCTC	1 cut(s)	678
AlwI	GGATC	4 cut(s)	76, 207, 288, 310
AoxI	GGCC	4 cut(s)	359, 432, 749, 820
ApeKI	GCWGC	2 cut(s)	10, 744
ApoI	RAATTY	3 cut(s)	323, 651, 776
Asp700I	GAANNNNTTC	1 cut(s)	811
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	822
BauI	CACGAG	1 cut(s)	737
BbsI	GAAGAC	3 cut(s)	22, 41, 83
BbvI	GCAGC	2 cut(s)	22, 756
BccI	CCATC	4 cut(s)	293, 350, 472, 812
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	3 cut(s)	363, 638, 824
BcoDI	GTCTC	1 cut(s)	678
BcuI	ACTAGT	1 cut(s)	871
BfaI	CTAG	2 cut(s)	566, 872
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	11, 745
BlsI	GCNGC	2 cut(s)	12, 746
Bme1390I	CCNGG	3 cut(s)	363, 638, 824
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	363, 638, 824
BmsI	GCATC	1 cut(s)	684
BpiI	GAAGAC	3 cut(s)	22, 41, 83
Bpu10I	CCTNAGC	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	636, 637
Bse118I	RCCGGY	1 cut(s)	747
Bse1I	ACTGG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	67
BseBI	CCWGG	3 cut(s)	363, 638, 824
BseDI	CCNNGG	2 cut(s)	636, 637
BseGI	GGATG	4 cut(s)	104, 176, 304, 699
BseJI	GATNNNNATC	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	22, 756
Bsh1236I	CGCG	1 cut(s)	726
BshFI	GGCC	4 cut(s)	361, 434, 751, 822
BsiSI	CCGG	1 cut(s)	748
BslFI	GGGAC	3 cut(s)	386, 399, 482
BsmAI	GTCTC	1 cut(s)	678
BsmFI	GGGAC	3 cut(s)	386, 399, 482
BsmI	GAATGC	2 cut(s)	457, 811
BsnI	GGCC	4 cut(s)	361, 434, 751, 822
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	8 cut(s)	68, 199, 247, 269, 280, 302, 537, 784
Bsp68I	TCGCGA	1 cut(s)	726
BspANI	GGCC	4 cut(s)	361, 434, 751, 822
BspFNI	CGCG	1 cut(s)	726
BspHI	TCATGA	1 cut(s)	787
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	4 cut(s)	76, 207, 288, 310
BsrFI	RCCGGY	1 cut(s)	747
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	747
BssECI	CCNNGG	2 cut(s)	636, 637
BssMI	GATC	8 cut(s)	68, 199, 247, 269, 280, 302, 537, 784
BssSI	CACGAG	1 cut(s)	737
Bst2BI	CACGAG	1 cut(s)	737
Bst2UI	CCWGG	3 cut(s)	363, 638, 824
Bst4CI	ACNGT	1 cut(s)	672
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	1 cut(s)	749
BstDEI	CTNAG	4 cut(s)	72, 181, 231, 885
BstF5I	GGATG	4 cut(s)	104, 176, 304, 699
BstFNI	CGCG	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	8 cut(s)	71, 202, 250, 272, 283, 305, 540, 787
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	8 cut(s)	68, 199, 247, 269, 280, 302, 537, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 599, 828
BstNI	CCWGG	3 cut(s)	363, 638, 824
BstSCI	CCNGG	3 cut(s)	361, 636, 822
BstUI	CGCG	1 cut(s)	726
BstV1I	GCAGC	2 cut(s)	22, 756
BstV2I	GAAGAC	3 cut(s)	22, 41, 83
BstX2I	RGATCY	2 cut(s)	68, 280
BstYI	RGATCY	2 cut(s)	68, 280
BsuRI	GGCC	4 cut(s)	361, 434, 751, 822
BtsCI	GGATG	4 cut(s)	104, 176, 304, 699
BtuMI	TCGCGA	1 cut(s)	726
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	749
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	1 cut(s)	529
Cfr10I	RCCGGY	1 cut(s)	747
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	835
CviAII	CATG	5 cut(s)	55, 446, 512, 572, 788
CviJI	RGCY	8 cut(s)	185, 237, 361, 434, 569, 747, 751, 822
CviKI_1	RGCY	8 cut(s)	185, 237, 361, 434, 569, 747, 751, 822
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	4 cut(s)	72, 181, 231, 885
DpnI	GATC	8 cut(s)	70, 201, 249, 271, 282, 304, 539, 786
DpnII	GATC	8 cut(s)	68, 199, 247, 269, 280, 302, 537, 784
EaeI	YGGCCR	1 cut(s)	820
Eco32I	GATATC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	207, 702
EcoRI	GAATTC	1 cut(s)	776
EcoRII	CCWGG	3 cut(s)	361, 636, 822
EcoRV	GATATC	1 cut(s)	143
FaeI	CATG	5 cut(s)	58, 449, 515, 575, 791
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FaqI	GGGAC	3 cut(s)	386, 399, 482
FatI	CATG	5 cut(s)	54, 445, 511, 571, 787
Fnu4HI	GCNGC	2 cut(s)	11, 745
FokI	GGATG	4 cut(s)	91, 163, 311, 706
Fsp4HI	GCNGC	2 cut(s)	11, 745
FspBI	CTAG	2 cut(s)	566, 872
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	2 cut(s)	11, 745
HaeIII	GGCC	4 cut(s)	361, 434, 751, 822
HapII	CCGG	1 cut(s)	748
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	5 cut(s)	58, 449, 515, 575, 791
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	4 cut(s)	223, 374, 562, 883
HpaII	CCGG	1 cut(s)	748
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	4 cut(s)	307, 379, 682, 817
Hpy188III	TCNNGA	3 cut(s)	267, 725, 788
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	4 cut(s)	237, 536, 683, 801
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	6 cut(s)	10, 290, 398, 455, 659, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 599, 828
HpyF3I	CTNAG	4 cut(s)	72, 181, 231, 885
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	5 cut(s)	58, 449, 515, 575, 791
HspAI	GCGC	1 cut(s)	527
KroI	GCCGGC	1 cut(s)	747
KroNI	GCCGGC	1 cut(s)	749
Kzo9I	GATC	8 cut(s)	68, 199, 247, 269, 280, 302, 537, 784
Lsp1109I	GCAGC	2 cut(s)	22, 756
LweI	GCATC	1 cut(s)	684
MaeI	CTAG	2 cut(s)	566, 872
MaeII	ACGT	1 cut(s)	548
MalI	GATC	8 cut(s)	70, 201, 249, 271, 282, 304, 539, 786
MboI	GATC	8 cut(s)	68, 199, 247, 269, 280, 302, 537, 784
MboII	GAAGA	9 cut(s)	22, 41, 88, 101, 137, 275, 487, 695, 698
MfeI	CAATTG	2 cut(s)	203, 699
MflI	RGATCY	2 cut(s)	68, 280
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	6 cut(s)	203, 323, 491, 651, 699, 776
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	3 cut(s)	217, 368, 877
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	7 cut(s)	271, 301, 445, 468, 746, 847, 852
Mox20I	TGGCCA	1 cut(s)	822
MroNI	GCCGGC	1 cut(s)	747
MroXI	GAANNNNTTC	1 cut(s)	811
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	2 cut(s)	5, 368
MslI	CAYNNNNRTG	2 cut(s)	450, 816
Msp20I	TGGCCA	1 cut(s)	822
MspI	CCGG	1 cut(s)	748
MspR9I	CCNGG	3 cut(s)	363, 638, 824
MunI	CAATTG	2 cut(s)	203, 699
Mva1269I	GAATGC	2 cut(s)	457, 811
MvaI	CCWGG	3 cut(s)	363, 638, 824
MvnI	CGCG	1 cut(s)	726
MwoI	GCNNNNNNNGC	3 cut(s)	404, 599, 828
NaeI	GCCGGC	1 cut(s)	749
NdeII	GATC	8 cut(s)	68, 199, 247, 269, 280, 302, 537, 784
NgoMIV	GCCGGC	1 cut(s)	747
NlaIII	CATG	5 cut(s)	58, 449, 515, 575, 791
NruI	TCGCGA	1 cut(s)	726
PagI	TCATGA	1 cut(s)	787
PasI	CCCWGGG	1 cut(s)	637
PctI	GAATGC	2 cut(s)	457, 811
PdiI	GCCGGC	1 cut(s)	749
PdmI	GAANNNNTTC	1 cut(s)	811
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	12, 746
PleI	GAGTC	3 cut(s)	217, 368, 877
PpsI	GAGTC	3 cut(s)	217, 368, 877
Psp1406I	AACGTT	1 cut(s)	548
Psp6I	CCWGG	3 cut(s)	361, 636, 822
PspGI	CCWGG	3 cut(s)	361, 636, 822
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	68, 280
RruI	TCGCGA	1 cut(s)	726
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
RseI	CAYNNNNRTG	2 cut(s)	450, 816
SaqAI	TTAA	2 cut(s)	5, 368
SatI	GCNGC	2 cut(s)	11, 745
Sau3AI	GATC	8 cut(s)	68, 199, 247, 269, 280, 302, 537, 784
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	3 cut(s)	217, 368, 877
ScrFI	CCNGG	3 cut(s)	363, 638, 824
SetI	ASST	8 cut(s)	171, 187, 239, 460, 524, 551, 571, 722
SfaNI	GCATC	1 cut(s)	684
SmiMI	CAYNNNNRTG	2 cut(s)	450, 816
SpeI	ACTAGT	1 cut(s)	871
Sse9I	AATT	6 cut(s)	203, 323, 491, 651, 699, 776
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	2 cut(s)	566, 872
StyD4I	CCNGG	3 cut(s)	361, 636, 822
TaaI	ACNGT	1 cut(s)	672
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	3 cut(s)	268, 441, 540
TaqII	GACCGA	2 cut(s)	128, 788
TasI	AATT	6 cut(s)	203, 323, 491, 651, 699, 776
TatI	WGTACW	1 cut(s)	834
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	2 cut(s)	5, 368
Tru9I	TTAA	2 cut(s)	5, 368
TseI	GCWGC	2 cut(s)	10, 744
XapI	RAATTY	3 cut(s)	323, 651, 776
XmnI	GAANNNNTTC	1 cut(s)	811
XspI	CTAG	2 cut(s)	566, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.