Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011455

Physical Location & Seq

Genomic Coordinates Reverse (-)

5843665 .. 5846047

Gene Structure 2383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1084600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAACGACGGCGAGAACGAAGAGTTTGGGTTCTCCAGAAACTACTTTCTGGCAAAGGAGCTCCGCGGTTCCGGCAAGAAATCGCAGTCGAAGATCTCAGATATCGATATCGTAGACGAACAGGTAATGCTGGGTCGCCTTCAATTCCTTAAAAATTTCCAATTTTTTTTGTTAATTTTGTTAAAGCTTGAAACTATGGCTGGAACTGGTTGCGGCGGCGGCTCAAATCGAACCCAAACACAAGAAAGAGGTGAAGGATGTGAAGGATGTGATGAACAATGTGGTCTTGGCCTTCTTATGTATGGATTTGGATCTAAGACGGCCTTGCTTGAAGATTTTGCTTCAACATCGTTAACCAAGTATTCTGTGGTTTTTGTCAATGGATATCTGCAGGGAACAAATATAAAACAGGTTGTGGTAGCCTTAGCTGAACTTCTGTGGGATCAATTGAAAACCAAAAGGAGTCCTTCCAGGAGCTCTTCCAAAGCACAACAGCCATTTAATTCCAGATCCATGGATGATCTTCTTGCATTTTTGAATGGATCGGAAGATACGACAAACGAATGTATAGTATGTGTCGTCATTCACAACATTGATGGACCTGGATTAAGGGACTCGGAAACCCAACAGTGTCTTGCACGAGTTGCTTCTTGTTCACATATTCGCATTGTGGCCTCTATTGATCATGTGAATGCACCTCTTTTGTGGGACAAGCAGATGGTTCACACACAGTTCAACTGGTACTGGCATCACGTTCCTACCTTTGCACCGTACAAGGTCGAAGGAATGCTCATTCCGCTGATCCTTGCACATGGAAATACCACCCAAAGTGCCAAAGGTGCTACAATAGTTTTGCAGAGTTTGACATCCAATGCTCAGAGCGTGTTCAAAGTTCTTGCAGAATATCAACTATCCCACTCGAACGAAGAAGGGATGCCGATTGATAATCTGTACGCAACCTGTCGAGAGCGGTTCCTTGTGAGCAGCCAGCTTACGCTTAACTCCCATTTGACAGAATTCAAAGATCATGAGTTGGTGAAGACCAAAAGGAATTCTGACGGCCAGGATTGCTTTCACATCCCTCTCACAAATGAGGCACTTGAAAAACTGCTAGCGGATCTCTGTCCTTCAACATTATGTAGATTTTATGTCCTGATACAAGTGGCAATAATCCAAAATTTTCACTCCCGGCTTAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC2

Protein Analysis

401

Amino Acids

44.75

Weight (kDa)

6.19

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA-like_ORC2	PF04084	93 - 252	3.2e-45	Origin recognition complex subunit 2 RecA-like domain
WHD_ORC2	PF24882	306 - 365	2.5e-22	ORC2 WHD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37560 AT2G37560
fragaria_vesca	FvH4_2g34610
malus_domestica	MD08G1103300.v1.1 MD15G1084600.v1.1
prunus_persica	Prupe.1G438300_v2.0.a1 Prupe.1G438300_v2.0.a1
pyrus_communis	pycom08g08470 pycom15g07990
rosa_chinensis	RchiOBHm_Chr6g0307531 RchiOBHm_Chr6g0307691
rosa_laevigata	RLG00000010708
rosa_multiflora	Rmu_sc0000031.1_g000024
rosa_roxburghii	Rroxscaffold_7G00160960
rosa_rugosa	Rorug06G0359500
rosa_samantha	Rh6AG469000 Rh6BG479600 Rh6CG485100 Rh6DG471800
rosa_wichuraiana	Rw6G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	970
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	66
AciI	CCGC	8 cut(s)	64, 66, 213, 216, 219, 797, 970, 1115
AclWI	GGATC	6 cut(s)	319, 450, 504, 550, 796, 1125
AcoI	YGGCCR	1 cut(s)	1060
AcsI	RAATTY	4 cut(s)	154, 1016, 1051, 1177
AfaI	GTAC	3 cut(s)	743, 773, 953
AjnI	CCWGG	3 cut(s)	470, 601, 1062
AluBI	AGCT	5 cut(s)	61, 187, 428, 477, 991
AluI	AGCT	5 cut(s)	61, 187, 428, 477, 991
Alw21I	GWGCWC	2 cut(s)	63, 479
AlwI	GGATC	6 cut(s)	319, 450, 504, 550, 796, 1125
AoxI	GGCC	4 cut(s)	289, 321, 672, 1060
ApeKI	GCWGC	1 cut(s)	984
ApoI	RAATTY	4 cut(s)	154, 1016, 1051, 1177
AspS9I	GGNCC	1 cut(s)	599
AsuC2I	CCSGG	1 cut(s)	1189
AsuHPI	GGTGA	2 cut(s)	263, 1048
AsuNHI	GCTAGC	1 cut(s)	1111
AvaII	GGWCC	1 cut(s)	599
BanII	GRGCYC	2 cut(s)	63, 479
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	1046
Bbv12I	GWGCWC	2 cut(s)	63, 479
BbvI	GCAGC	1 cut(s)	996
BccI	CCATC	2 cut(s)	590, 712
BceAI	ACGGC	3 cut(s)	25, 336, 1075
BciT130I	CCWGG	3 cut(s)	472, 603, 1064
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	1189
BfaI	CTAG	1 cut(s)	1112
BfmI	CTRYAG	1 cut(s)	389
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	4 cut(s)	214, 217, 220, 985
BlsI	GCNGC	4 cut(s)	215, 218, 221, 986
Bme1390I	CCNGG	4 cut(s)	472, 603, 1064, 1189
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	70, 974
BmrFI	CCNGG	4 cut(s)	472, 603, 1064, 1189
BmsI	GCATC	2 cut(s)	757, 924
BmtI	GCTAGC	1 cut(s)	1115
BpiI	GAAGAC	1 cut(s)	1046
BpmI	CTGGAG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	1189
Bsa29I	ATCGAT	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	64, 513
Bse1I	ACTGG	3 cut(s)	211, 743, 749
Bse8I	GATNNNNATC	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	472, 603, 1064
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	64, 513
BseGI	GGATG	6 cut(s)	263, 272, 523, 866, 939, 1077
BseJI	GATNNNNATC	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	111, 890
BseNI	ACTGG	3 cut(s)	211, 743, 749
BseXI	GCAGC	1 cut(s)	996
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	4 cut(s)	291, 323, 674, 1062
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	63, 479
BsiSI	CCGG	2 cut(s)	72, 1189
BslFI	GGGAC	2 cut(s)	626, 722
BsmFI	GGGAC	2 cut(s)	626, 722
BsmI	GAATGC	2 cut(s)	697, 792
BsnI	GGCC	4 cut(s)	291, 323, 674, 1062
Bsp1286I	GDGCHC	2 cut(s)	63, 479
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	8 cut(s)	64, 66, 213, 216, 219, 797, 970, 1115
BspANI	GGCC	4 cut(s)	291, 323, 674, 1062
BspCNI	CTCAG	2 cut(s)	110, 889
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	1027
BspLI	GGNNCC	2 cut(s)	70, 974
BspMAI	CTGCAG	1 cut(s)	393
BspOI	GCTAGC	1 cut(s)	1115
BspPI	GGATC	6 cut(s)	319, 450, 504, 550, 796, 1125
BspQI	GCTCTTC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	970
BsrI	ACTGG	3 cut(s)	211, 743, 749
BssECI	CCNNGG	2 cut(s)	64, 513
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	3 cut(s)	472, 603, 1064
Bst4CI	ACNGT	3 cut(s)	630, 732, 771
Bst6I	CTCTTC	2 cut(s)	15, 484
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	989, 1113
BstDEI	CTNAG	4 cut(s)	97, 315, 424, 876
BstDSI	CCRYGG	2 cut(s)	64, 513
BstF5I	GGATG	6 cut(s)	263, 272, 523, 866, 939, 1077
BstFNI	CGCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	6 cut(s)	72, 219, 644, 796, 839, 1068
BstNI	CCWGG	3 cut(s)	472, 603, 1064
BstSCI	CCNGG	4 cut(s)	470, 601, 1062, 1187
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	996
BstV2I	GAAGAC	1 cut(s)	1046
BstX2I	RGATCY	4 cut(s)	93, 311, 509, 1117
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	4 cut(s)	93, 311, 509, 1117
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	4 cut(s)	291, 323, 674, 1062
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	64, 513
BtsCI	GGATG	6 cut(s)	263, 272, 523, 866, 939, 1077
BtsIMutI	CAGTG	1 cut(s)	635
Cac8I	GCNNGC	2 cut(s)	989, 1113
CciI	TCATGA	1 cut(s)	1027
Cfr13I	GGNCC	1 cut(s)	599
Cfr42I	CCGCGG	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	742, 772, 952
CviAII	CATG	4 cut(s)	514, 686, 812, 1028
CviQI	GTAC	3 cut(s)	742, 772, 952
DdeI	CTNAG	4 cut(s)	97, 315, 424, 876
EaeI	YGGCCR	1 cut(s)	1060
Eam1104I	CTCTTC	2 cut(s)	15, 484
EarI	CTCTTC	2 cut(s)	15, 484
Ecl136II	GAGCTC	2 cut(s)	61, 477
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	2 cut(s)	63, 479
Eco32I	GATATC	3 cut(s)	103, 109, 386
Eco47I	GGWCC	1 cut(s)	599
Eco53kI	GAGCTC	2 cut(s)	61, 477
EcoICRI	GAGCTC	2 cut(s)	61, 477
EcoRI	GAATTC	2 cut(s)	1016, 1051
EcoRII	CCWGG	3 cut(s)	470, 601, 1062
EcoRV	GATATC	3 cut(s)	103, 109, 386
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	63, 479
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	517, 689, 815, 1031
FalI	AAGNNNNNCTT	4 cut(s)	308, 340, 451, 483
FaqI	GGGAC	2 cut(s)	626, 722
FatI	CATG	4 cut(s)	513, 685, 811, 1027
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	214, 217, 220, 985
FokI	GGATG	6 cut(s)	270, 279, 530, 853, 946, 1064
FriOI	GRGCYC	2 cut(s)	63, 479
Fsp4HI	GCNGC	4 cut(s)	214, 217, 220, 985
FspBI	CTAG	1 cut(s)	1112
GluI	GCNGC	4 cut(s)	214, 217, 220, 985
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	4 cut(s)	291, 323, 674, 1062
HapII	CCGG	2 cut(s)	72, 1189
Hin1II	CATG	4 cut(s)	517, 689, 815, 1031
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	2 cut(s)	463, 614
HpaI	GTTAAC	1 cut(s)	354
HpaII	CCGG	2 cut(s)	72, 1189
HphI	GGTGA	2 cut(s)	263, 1048
Hpy166II	GTNNAC	4 cut(s)	115, 354, 656, 724
Hpy188I	TCNGA	5 cut(s)	100, 547, 619, 879, 1057
Hpy188III	TCNNGA	5 cut(s)	36, 507, 965, 1028, 1153
Hpy8I	GTNNAC	4 cut(s)	115, 354, 656, 724
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	8 cut(s)	149, 248, 257, 302, 477, 776, 923, 1137
HpyCH4III	ACNGT	3 cut(s)	630, 732, 771
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	8 cut(s)	391, 530, 638, 695, 767, 809, 856, 899
HpyF10VI	GCNNNNNNNGC	6 cut(s)	72, 219, 644, 796, 839, 1068
HpyF3I	CTNAG	4 cut(s)	97, 315, 424, 876
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	4 cut(s)	517, 689, 815, 1031
Ksp22I	TGATCA	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	354
KspI	CCGCGG	1 cut(s)	67
LguI	GCTCTTC	1 cut(s)	484
LmnI	GCTCC	3 cut(s)	58, 66, 474
Lsp1109I	GCAGC	1 cut(s)	996
LweI	GCATC	2 cut(s)	757, 924
MaeI	CTAG	1 cut(s)	1112
MaeII	ACGT	1 cut(s)	753
MbiI	CCGCTC	1 cut(s)	970
MboII	GAAGA	8 cut(s)	32, 103, 344, 471, 515, 560, 938, 1051
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	4 cut(s)	93, 311, 509, 1117
MhlI	GDGCHC	2 cut(s)	63, 479
MluCI	AATT	9 cut(s)	143, 154, 161, 174, 446, 502, 1016, 1051, 1177
MlyI	GAGTC	2 cut(s)	472, 608
MnlI	CCTC	5 cut(s)	242, 685, 708, 1087, 1092
MseI	TTAA	8 cut(s)	150, 173, 182, 353, 501, 608, 999, 1194
MslI	CAYNNNNRTG	1 cut(s)	690
MspA1I	CMGCKG	2 cut(s)	66, 799
MspI	CCGG	2 cut(s)	72, 1189
MspR9I	CCNGG	4 cut(s)	472, 603, 1064, 1189
MunI	CAATTG	1 cut(s)	446
Mva1269I	GAATGC	2 cut(s)	697, 792
MvaI	CCWGG	3 cut(s)	472, 603, 1064
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	6 cut(s)	72, 219, 644, 796, 839, 1068
NciI	CCSGG	1 cut(s)	1189
NcoI	CCATGG	1 cut(s)	513
NheI	GCTAGC	1 cut(s)	1111
NlaIII	CATG	4 cut(s)	517, 689, 815, 1031
NlaIV	GGNNCC	2 cut(s)	70, 974
PagI	TCATGA	1 cut(s)	1027
PciSI	GCTCTTC	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 551
PctI	GAATGC	2 cut(s)	697, 792
PfoI	TCCNGGA	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	215, 218, 221, 986
PleI	GAGTC	2 cut(s)	471, 608
PpsI	GAGTC	2 cut(s)	471, 608
Psp124BI	GAGCTC	2 cut(s)	63, 479
Psp6I	CCWGG	3 cut(s)	470, 601, 1062
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	3 cut(s)	470, 601, 1062
PspN4I	GGNNCC	2 cut(s)	70, 974
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	393
PsuI	RGATCY	4 cut(s)	93, 311, 509, 1117
RsaI	GTAC	3 cut(s)	743, 773, 953
RsaNI	GTAC	3 cut(s)	742, 772, 952
RseI	CAYNNNNRTG	1 cut(s)	690
SacI	GAGCTC	2 cut(s)	63, 479
SacII	CCGCGG	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	484
SaqAI	TTAA	8 cut(s)	150, 173, 182, 353, 501, 608, 999, 1194
SatI	GCNGC	4 cut(s)	214, 217, 220, 985
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	2 cut(s)	472, 608
ScrFI	CCNGG	4 cut(s)	472, 603, 1064, 1189
SduI	GDGCHC	2 cut(s)	63, 479
SfaNI	GCATC	2 cut(s)	757, 924
SfcI	CTRYAG	1 cut(s)	389
Sfr303I	CCGCGG	1 cut(s)	67
SgrBI	CCGCGG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	690
Sse9I	AATT	9 cut(s)	143, 154, 161, 174, 446, 502, 1016, 1051, 1177
SsiI	CCGC	8 cut(s)	64, 66, 213, 216, 219, 797, 970, 1115
SspMI	CTAG	1 cut(s)	1112
SstI	GAGCTC	2 cut(s)	63, 479
StyD4I	CCNGG	4 cut(s)	470, 601, 1062, 1187
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	630, 732, 771
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	6 cut(s)	89, 105, 229, 780, 920, 964
TasI	AATT	9 cut(s)	143, 154, 161, 174, 446, 502, 1016, 1051, 1177
TauI	GCSGC	3 cut(s)	216, 219, 222
Tru1I	TTAA	8 cut(s)	150, 173, 182, 353, 501, 608, 999, 1194
Tru9I	TTAA	8 cut(s)	150, 173, 182, 353, 501, 608, 999, 1194
TscAI	CASTG	1 cut(s)	635
TseI	GCWGC	1 cut(s)	984
TspDTI	ATGAA	2 cut(s)	17, 288
TspRI	CASTG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	4 cut(s)	154, 1016, 1051, 1177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.