FvH4_2g34841
NAC Family

inactive heme oxygenase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009205
Physical Location & Seq
Forward (+)
25804293 .. 25806866
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34841.t1

Sequence Viewer

Length: 939 bp
ATGCAACTCGCAACGACGTCGTTTATGCACAAAGCAGTGTCACCTCCAGCTCTCTACGCCCTTCCAATTCCAACCAGAAACCTCCCCTCCCGCTTTCTCTGCTGCTCCAATCCGAGCACCGCCGCCGCCTCCGCCTCCACCTCATGGTCTCCGCCTCCGGTTCCGGCGACCACAGGTACGGCACCGCCGGTCGTGAAGCGGAGGACGAGGTACCGGAAGCAGTACCCGGGGGAGAGCAAAGGCATCACGGAAGAGATGAGATTCGTCGCCATGAGGCTCCGTAACAGAAACGGCAAGAAAATCGACTCTCAGTCCGACGGTGACAACACTCAGAGCGAGAGTGACGATAATGCCCCTGACGAGAGTGATGCTGATGCTTCCGAATCCGACGGCGAGAAGGAGACGTGGCAGCCTAGCCTGCAAGGGTTTCTGAGGTACCTGGTGGACAGTAAGCTCGTGTTTGACACCGTGGAGCGCATTGTTGATGACTCAAACGACGTCGCTTACGCATATTTCAGGATGACTGGATTGGAGAGATCAGAAGCGATTTCGAGAGATTTGGAGTGGTTTGGGGAACAAGGCAATGTGATTCCGGAACCCAGCAATGCTGGAGTTTCGTATGCAAAGTATCTGAAAGAGCTTTCTGAAACTTCAGCACCAATATTCCTATGCCACTTTTATAACATTTACTTTTCACATATCTCTGGTGGGCAGGTCATTTCAAGACAGGTATCTGAGAGGCTACTTGGAGGAAGGGAGTTGGAGTTTTGCACATGGGAGGGCGATGTGCCAGAGTTGATAAGAGGTGTTCGCGAGAAGCTCAACAAGCTTGGAGAGCACTGGAGTCGAGATGACAAAAACAAATGCTTAAGAGAAACTACCAAGTCATTCCGGTCTCTTGGGCAGATAGTTCGCCTGATCATCTTAGAAACCAAGTGA

Protein Analysis

313

Amino Acids

35.06

Weight (kDa)

5.94

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 143 - 304 1.3e-10 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26550 AT2G26550 AT2G26550 AT2G26550
fragaria_vesca FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841
malus_domestica MD15G1086700.v1.1
prunus_persica Prupe.1G440300_v2.0.a1
pyrus_communis pycom15g08160
rosa_chinensis RchiOBHm_Chr6g0307211
rosa_laevigata RLG00000010727
rosa_multiflora Rmu_sc0041325.1_g000001
rosa_roxburghii Rroxscaffold_7G00161080
rosa_rugosa Rorug06G0357700
rosa_samantha Rh6AG468300 Rh6BG432200 Rh6CG483500 Rh6DG470100
rosa_wichuraiana Rw6G040800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AatII GACGTC 2 cut(s) 20, 501
Acc36I ACCTGC 1 cut(s) 703
Acc65I GGTACC 2 cut(s) 210, 435
AccB1I GGYRCC 3 cut(s) 181, 210, 435
AccB7I CCANNNNNTGG 1 cut(s) 144
AccII CGCG 1 cut(s) 813
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 8 cut(s) 91, 120, 123, 126, 132, 152, 185, 199
AcuI CTGAAG 1 cut(s) 636
AcyI GRCGYC 2 cut(s) 17, 498
AfaI GTAC 4 cut(s) 178, 212, 224, 437
AfiI CCNNNNNNNGG 1 cut(s) 144
AflII CTTAAG 1 cut(s) 868
AgsI TTSAA 1 cut(s) 723
AhdI GACNNNNNGTC 1 cut(s) 310
AjiI CACGTC 1 cut(s) 405
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 5 cut(s) 50, 454, 640, 820, 829
AluI AGCT 5 cut(s) 50, 454, 640, 820, 829
Alw21I GWGCWC 2 cut(s) 119, 840
Alw26I GTCTC 3 cut(s) 153, 395, 900
Ama87I CYCGRG 1 cut(s) 226
Aor13HI TCCGGA 1 cut(s) 592
ApeKI GCWGC 2 cut(s) 102, 409
Asp718I GGTACC 2 cut(s) 210, 435
AspLEI GCGC 1 cut(s) 477
AsuC2I CCSGG 2 cut(s) 227, 228
AsuHPI GGTGA 2 cut(s) 33, 332
AvaI CYCGRG 1 cut(s) 226
BanI GGYRCC 3 cut(s) 181, 210, 435
BauI CACGAG 1 cut(s) 455
Bbv12I GWGCWC 2 cut(s) 119, 840
BbvI GCAGC 2 cut(s) 89, 421
BceAI ACGGC 3 cut(s) 195, 307, 406
BcgI CGANNNNNNTGC 9 cut(s) 34, 283, 317, 350, 384, 827, 861, 893, 927
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 918
BcnI CCSGG 2 cut(s) 227, 228
BcoDI GTCTC 3 cut(s) 153, 395, 900
BfaI CTAG 1 cut(s) 414
BfrI CTTAAG 1 cut(s) 868
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 4 cut(s) 103, 123, 126, 410
BlsI GCNGC 4 cut(s) 104, 124, 127, 411
Bme1390I CCNGG 3 cut(s) 227, 228, 440
BmeRI GACNNNNNGTC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 405
BmiI GGNNCC 6 cut(s) 162, 183, 212, 278, 437, 597
BmrFI CCNGG 3 cut(s) 227, 228, 440
BmsI GCATC 3 cut(s) 252, 358, 364
BpmI CTGGAG 3 cut(s) 30, 630, 862
BpuMI CCSGG 2 cut(s) 227, 228
BsaHI GRCGYC 2 cut(s) 17, 498
BsaI GGTCTC 2 cut(s) 153, 900
BsaJI CCNNGG 3 cut(s) 226, 227, 468
BsaWI WCCGGW 4 cut(s) 157, 213, 592, 891
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 749, 779
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 529, 845
Bse3DI GCAATG 2 cut(s) 589, 610
BseAI TCCGGA 1 cut(s) 592
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 226, 227, 468
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 2 cut(s) 589, 610
BseMII CTCAG 4 cut(s) 323, 344, 422, 726
BseNI ACTGG 2 cut(s) 529, 845
BseXI GCAGC 2 cut(s) 89, 421
BseYI CCCAGC 1 cut(s) 599
Bsh1236I CGCG 1 cut(s) 813
Bsh1285I CGRYCG 1 cut(s) 192
BshNI GGYRCC 3 cut(s) 181, 210, 435
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 119, 840
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 7 cut(s) 158, 164, 188, 214, 227, 593, 892
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 3 cut(s) 153, 395, 900
BsmBI CGTCTC 1 cut(s) 395
Bso31I GGTCTC 2 cut(s) 153, 900
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 119, 840
Bsp13I TCCGGA 1 cut(s) 592
Bsp143I GATC 2 cut(s) 536, 918
Bsp68I TCGCGA 1 cut(s) 813
BspACI CCGC 8 cut(s) 91, 120, 123, 126, 132, 152, 185, 199
BspCNI CTCAG 4 cut(s) 322, 343, 423, 727
BspEI TCCGGA 1 cut(s) 592
BspFNI CGCG 1 cut(s) 813
BspLI GGNNCC 6 cut(s) 162, 183, 212, 278, 437, 597
BspMI ACCTGC 1 cut(s) 703
BspT107I GGYRCC 3 cut(s) 181, 210, 435
BspTI CTTAAG 1 cut(s) 868
BspTNI GGTCTC 2 cut(s) 153, 900
BsrDI GCAATG 2 cut(s) 589, 610
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 2 cut(s) 529, 845
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 226, 227, 468
BssMI GATC 2 cut(s) 536, 918
BssNI GRCGYC 2 cut(s) 17, 498
BssSI CACGAG 1 cut(s) 455
Bst2BI CACGAG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 3 cut(s) 320, 449, 469
Bst6I CTCTTC 1 cut(s) 246
BstACI GRCGYC 2 cut(s) 17, 498
BstAFI CTTAAG 1 cut(s) 868
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 5 cut(s) 309, 330, 431, 735, 925
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 525
BstFNI CGCG 1 cut(s) 813
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 2 cut(s) 539, 921
BstMAI GTCTC 3 cut(s) 153, 395, 900
BstMBI GATC 2 cut(s) 536, 918
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 6 cut(s) 56, 99, 131, 418, 826, 835
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 3 cut(s) 225, 226, 438
BstUI CGCG 1 cut(s) 813
BstV1I GCAGC 2 cut(s) 89, 421
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 798
BtrI CACGTC 1 cut(s) 405
BtsCI GGATG 1 cut(s) 525
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 838
BtuMI TCGCGA 1 cut(s) 813
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 1 cut(s) 419
CfoI GCGC 1 cut(s) 477
Cfr10I RCCGGY 1 cut(s) 187
Cfr9I CCCGGG 1 cut(s) 226
CsiI ACCWGGT 1 cut(s) 438
Csp6I GTAC 4 cut(s) 177, 211, 223, 436
CviAII CATG 3 cut(s) 144, 271, 774
CviJI RGCY 9 cut(s) 50, 277, 412, 417, 454, 640, 742, 820, 829
CviKI_1 RGCY 9 cut(s) 50, 277, 412, 417, 454, 640, 742, 820, 829
CviQI GTAC 4 cut(s) 177, 211, 223, 436
DdeI CTNAG 5 cut(s) 309, 330, 431, 735, 925
DpnI GATC 2 cut(s) 538, 920
DpnII GATC 2 cut(s) 536, 918
DriI GACNNNNNGTC 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 246
Eam1105I GACNNNNNGTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 2 cut(s) 121, 141
Eco31I GGTCTC 2 cut(s) 153, 900
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 3 cut(s) 147, 274, 777
FaiI YATR 9 cut(s) 26, 145, 272, 511, 621, 670, 681, 699, 775
FatI CATG 3 cut(s) 143, 270, 773
FauI CCCGC 1 cut(s) 98
FbaI TGATCA 1 cut(s) 918
Fnu4HI GCNGC 4 cut(s) 103, 123, 126, 410
FokI GGATG 1 cut(s) 532
Fsp4HI GCNGC 4 cut(s) 103, 123, 126, 410
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 476
GluI GCNGC 4 cut(s) 103, 123, 126, 410
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 3 cut(s) 30, 630, 862
HapII CCGG 7 cut(s) 158, 164, 188, 214, 227, 593, 892
HhaI GCGC 1 cut(s) 477
Hin1I GRCGYC 2 cut(s) 17, 498
Hin1II CATG 3 cut(s) 147, 274, 777
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 6 cut(s) 261, 305, 383, 488, 589, 844
HpaII CCGG 7 cut(s) 158, 164, 188, 214, 227, 593, 892
HphI GGTGA 2 cut(s) 33, 332
Hpy166II GTNNAC 1 cut(s) 445
Hpy188III TCNNGA 7 cut(s) 193, 517, 552, 593, 723, 812, 848
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 7 cut(s) 19, 22, 269, 320, 392, 500, 503
HpyAV CCTTC 3 cut(s) 71, 391, 747
HpyCH4III ACNGT 3 cut(s) 320, 449, 469
HpyCH4IV ACGT 3 cut(s) 17, 404, 498
HpyCH4V TGCA 5 cut(s) 4, 28, 421, 623, 771
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 99, 131, 418, 826, 835
HpyF3I CTNAG 5 cut(s) 309, 330, 431, 735, 925
HpySE526I ACGT 3 cut(s) 17, 404, 498
Hsp92I GRCGYC 2 cut(s) 17, 498
Hsp92II CATG 3 cut(s) 147, 274, 777
HspAI GCGC 1 cut(s) 475
Kpn2I TCCGGA 1 cut(s) 592
KpnI GGTACC 2 cut(s) 214, 439
Ksp22I TGATCA 1 cut(s) 918
Kzo9I GATC 2 cut(s) 536, 918
LmnI GCTCC 3 cut(s) 110, 282, 472
Lsp1109I GCAGC 2 cut(s) 89, 421
LweI GCATC 3 cut(s) 252, 358, 364
MabI ACCWGGT 1 cut(s) 438
MaeI CTAG 1 cut(s) 414
MaeII ACGT 3 cut(s) 17, 404, 498
MaeIII GTNAC 4 cut(s) 39, 281, 320, 341
MalI GATC 2 cut(s) 538, 920
MboI GATC 2 cut(s) 536, 918
MboII GAAGA 1 cut(s) 263
MhlI GDGCHC 2 cut(s) 119, 840
MluCI AATT 1 cut(s) 66
MlyI GAGTC 3 cut(s) 299, 482, 853
MmeI TCCRAC 4 cut(s) 95, 339, 411, 741
MroI TCCGGA 1 cut(s) 592
MseI TTAA 1 cut(s) 869
MspCI CTTAAG 1 cut(s) 868
MspI CCGG 7 cut(s) 158, 164, 188, 214, 227, 593, 892
MspR9I CCNGG 3 cut(s) 227, 228, 440
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 813
MwoI GCNNNNNNNGC 6 cut(s) 56, 99, 131, 418, 826, 835
NciI CCSGG 2 cut(s) 227, 228
NdeII GATC 2 cut(s) 536, 918
NlaIII CATG 3 cut(s) 147, 274, 777
NlaIV GGNNCC 6 cut(s) 162, 183, 212, 278, 437, 597
NmuCI GTSAC 3 cut(s) 39, 320, 341
NruI TCGCGA 1 cut(s) 813
PfeI GAWTC 3 cut(s) 261, 383, 589
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 4 cut(s) 104, 124, 127, 411
PleI GAGTC 3 cut(s) 299, 482, 852
PpsI GAGTC 3 cut(s) 299, 482, 852
PsiI TTATAA 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 438
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 6 cut(s) 162, 183, 212, 278, 437, 597
RruI TCGCGA 1 cut(s) 813
RsaI GTAC 4 cut(s) 178, 212, 224, 437
RsaNI GTAC 4 cut(s) 177, 211, 223, 436
SaqAI TTAA 1 cut(s) 869
SatI GCNGC 4 cut(s) 103, 123, 126, 410
Sau3AI GATC 2 cut(s) 536, 918
SchI GAGTC 3 cut(s) 299, 482, 853
ScrFI CCNGG 3 cut(s) 227, 228, 440
SduI GDGCHC 2 cut(s) 119, 840
SexAI ACCWGGT 1 cut(s) 438
SfaNI GCATC 3 cut(s) 252, 358, 364
SmaI CCCGGG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
Sse9I AATT 1 cut(s) 66
SsiI CCGC 8 cut(s) 91, 120, 123, 126, 132, 152, 185, 199
SspI AATATT 1 cut(s) 663
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 3 cut(s) 225, 226, 438
TaaI ACNGT 3 cut(s) 320, 449, 469
TaiI ACGT 3 cut(s) 20, 407, 501
TaqI TCGA 3 cut(s) 303, 551, 847
TasI AATT 1 cut(s) 66
TauI GCSGC 2 cut(s) 125, 128
TfiI GAWTC 3 cut(s) 261, 383, 589
Tru1I TTAA 1 cut(s) 869
Tru9I TTAA 1 cut(s) 869
TscAI CASTG 2 cut(s) 42, 845
TseFI GTSAC 3 cut(s) 39, 320, 341
TseI GCWGC 2 cut(s) 102, 409
Tsp45I GTSAC 3 cut(s) 39, 320, 341
TspGWI ACGGA 2 cut(s) 263, 269
TspMI CCCGGG 1 cut(s) 226
TspRI CASTG 2 cut(s) 42, 845
Van91I CCANNNNNTGG 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 868
XmaI CCCGGG 1 cut(s) 226
XspI CTAG 1 cut(s) 414
ZraI GACGTC 2 cut(s) 18, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.