Rh6DG470100
NAC Family

inactive heme oxygenase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009205
Physical Location & Seq
Reverse (-)
63704857 .. 63706276
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG470100.1

Sequence Viewer

Length: 957 bp
ATGCAATACGCAACGACGTCGTTAATGGACAAAGCCGTGTCCCCCTCAATTCTTTACACCCTTTCACCCAAGCCCTCCCCCTCAATTTCAACCAGAAAGCTCCCCTCCCTGTTTCTCTGCTGCTCCGATTCGAGCACCGCCGCCGCCTCCACCTCCACTTCTTGGTCTCCGCCTCCGATTCCGGCCACCACCGGCACGGCGCCGCCGGTCGTGAGGCGGAGGACGAGGTACAGGAAGCAGTACCCGGGAGAGAGCAAAGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGGCTCCGTAACAGAAACGGCAAGAAACTCGACCCCCGATCTGACGGTGATGATAGTCAGAGTGAAAGTGACGATAATGCCCCTGACGACAGTGATGCTTCGGAATCTGACGGCGAGGGCGAGAAGGGGACTTGGCAGCCTAGCGTGGAGGGGTTTCTCAAGTACTTGGTGGACAGTAAGCTCGTGTTTGACACCGTGGAGCGCATTGTTGATGATTCAAACGACGTCGCTTACGCGTATTTCAGGAATACTGGATTGGAAAGATCAGAAGCGCTTTCGAAAGATTTGCAATGGTTTGGTGAACAGGGCAATGTGATTCCGGAGCCCAGCAATCCAGGAGTTTCTTATGCCAAGTATCTTAAACAACTTGCAGAAACTTGTGCGCCATTGTTCCTCTGCCACTTTTATAATATATATTTTTCACATGTATCTGGTGGGCAGGTCATAGCAAGGCAGGTATCTGAGAGGCTACTTGAAGGAAGGGAGTTGGAGTTTTACACATGGGAAGGTGATGTGCCAGAGTTAATGAGAGGGGTTCGTGAGAAGCTCAACAAGCTTGGAGAGCACTGGAGTCGAGATGACAAGAACAAATGCTTAAGAGAAACAACCAAGTCATTCCGATCTCTGGGGCAGATAATTCGCCTGATCATCTTAGAAACCAAGTGA

Protein Analysis

318

Amino Acids

35.73

Weight (kDa)

5.83

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 147 - 310 4.1e-11 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26550 AT2G26550 AT2G26550 AT2G26550
fragaria_vesca FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841
malus_domestica MD15G1086700.v1.1
prunus_persica Prupe.1G440300_v2.0.a1
pyrus_communis pycom15g08160
rosa_chinensis RchiOBHm_Chr6g0307211
rosa_laevigata RLG00000010727
rosa_multiflora Rmu_sc0041325.1_g000001
rosa_roxburghii Rroxscaffold_7G00161080
rosa_rugosa Rorug06G0357700
rosa_samantha Rh6AG468300 Rh6BG432200 Rh6CG483500 Rh6DG470100
rosa_wichuraiana Rw6G040800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AatII GACGTC 2 cut(s) 20, 519
Acc36I ACCTGC 2 cut(s) 721, 736
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 162
AccII CGCG 1 cut(s) 527
AccIII TCCGGA 1 cut(s) 610
AciI CCGC 6 cut(s) 138, 141, 144, 170, 203, 217
AcoI YGGCCR 1 cut(s) 183
AcyI GRCGYC 3 cut(s) 17, 200, 516
AfaI GTAC 3 cut(s) 230, 242, 455
AfeI AGCGCT 1 cut(s) 564
AfiI CCNNNNNNNGG 2 cut(s) 162, 916
AflII CTTAAG 1 cut(s) 886
AflIII ACRYGT 2 cut(s) 525, 715
AgsI TTSAA 3 cut(s) 90, 510, 767
AjnI CCWGG 1 cut(s) 625
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 4 cut(s) 100, 472, 838, 847
AluI AGCT 4 cut(s) 100, 472, 838, 847
Alw21I GWGCWC 2 cut(s) 137, 858
Alw26I GTCTC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 610
Aor51HI AGCGCT 1 cut(s) 564
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 120, 427
AspLEI GCGC 4 cut(s) 202, 495, 565, 676
AsuC2I CCSGG 2 cut(s) 245, 246
AsuHPI GGTGA 5 cut(s) 57, 256, 350, 602, 812
AsuII TTCGAA 1 cut(s) 569
AvaI CYCGRG 1 cut(s) 244
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 618
BauI CACGAG 1 cut(s) 473
Bbv12I GWGCWC 2 cut(s) 137, 858
BbvI GCAGC 2 cut(s) 107, 439
BceAI ACGGC 4 cut(s) 20, 213, 325, 418
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 1 cut(s) 936
BcnI CCSGG 2 cut(s) 245, 246
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 2 cut(s) 203, 566
BfrI CTTAAG 1 cut(s) 886
BfuAI ACCTGC 2 cut(s) 721, 736
BisI GCNGC 5 cut(s) 121, 141, 144, 203, 428
BlsI GCNGC 5 cut(s) 122, 142, 145, 204, 429
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 3 cut(s) 245, 246, 627
BmeT110I CYCGRG 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 201, 296, 615
BmrFI CCNGG 3 cut(s) 245, 246, 627
BmsI GCATC 2 cut(s) 270, 376
BpmI CTGGAG 1 cut(s) 880
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 245, 246
BsaHI GRCGYC 3 cut(s) 17, 200, 516
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 244, 486
BsaWI WCCGGW 1 cut(s) 610
BsaXI ACNNNNNCTCC 2 cut(s) 767, 797
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 916
Bse118I RCCGGY 2 cut(s) 191, 205
Bse1I ACTGG 2 cut(s) 547, 863
Bse3DI GCAATG 2 cut(s) 587, 607
BseAI TCCGGA 1 cut(s) 610
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 244, 486
BseLI CCNNNNNNNGG 2 cut(s) 162, 916
BseMI GCAATG 2 cut(s) 587, 607
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 2 cut(s) 547, 863
BseXI GCAGC 2 cut(s) 107, 439
BseYI CCCAGC 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 527
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 137, 858
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 5 cut(s) 182, 192, 206, 245, 611
BslFI GGGAC 2 cut(s) 25, 433
BslI CCNNNNNNNGG 2 cut(s) 162, 916
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 25, 433
BsnI GGCC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 569
Bsp1286I GDGCHC 3 cut(s) 137, 618, 858
Bsp13I TCCGGA 1 cut(s) 610
Bsp143I GATC 4 cut(s) 329, 554, 911, 936
BspACI CCGC 6 cut(s) 138, 141, 144, 170, 203, 217
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 745
BspEI TCCGGA 1 cut(s) 610
BspFNI CGCG 1 cut(s) 527
BspLI GGNNCC 3 cut(s) 201, 296, 615
BspMI ACCTGC 2 cut(s) 721, 736
BspT104I TTCGAA 1 cut(s) 569
BspT107I GGYRCC 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 886
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 587, 607
BsrFI RCCGGY 2 cut(s) 191, 205
BsrI ACTGG 2 cut(s) 547, 863
BssAI RCCGGY 2 cut(s) 191, 205
BssECI CCNNGG 2 cut(s) 244, 486
BssMI GATC 4 cut(s) 329, 554, 911, 936
BssNI GRCGYC 3 cut(s) 17, 200, 516
BssSI CACGAG 1 cut(s) 473
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 4 cut(s) 338, 383, 467, 487
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 3 cut(s) 17, 200, 516
BstAFI CTTAAG 1 cut(s) 886
BstBI TTCGAA 1 cut(s) 569
BstDEI CTNAG 2 cut(s) 753, 943
BstDSI CCRYGG 1 cut(s) 486
BstFNI CGCG 1 cut(s) 527
BstH2I RGCGCY 2 cut(s) 203, 566
BstHHI GCGC 4 cut(s) 202, 495, 565, 676
BstKTI GATC 4 cut(s) 332, 557, 914, 939
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 4 cut(s) 329, 554, 911, 936
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 2 cut(s) 844, 853
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 3 cut(s) 243, 244, 625
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 2 cut(s) 107, 439
BsuRI GGCC 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 486
BtsIMutI CAGTG 2 cut(s) 388, 856
BveI ACCTGC 2 cut(s) 721, 736
CfoI GCGC 4 cut(s) 202, 495, 565, 676
Cfr10I RCCGGY 2 cut(s) 191, 205
Cfr9I CCCGGG 1 cut(s) 244
Csp6I GTAC 3 cut(s) 229, 241, 454
CviAII CATG 3 cut(s) 289, 716, 792
CviQI GTAC 3 cut(s) 229, 241, 454
DdeI CTNAG 2 cut(s) 753, 943
DinI GGCGCC 1 cut(s) 201
DpnI GATC 4 cut(s) 331, 556, 913, 938
DpnII GATC 4 cut(s) 329, 554, 911, 936
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 2 cut(s) 159, 232
Eco24I GRGCYC 1 cut(s) 618
Eco31I GGTCTC 1 cut(s) 171
Eco47III AGCGCT 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 618
EgeI GGCGCC 1 cut(s) 201
EheI GGCGCC 1 cut(s) 201
FaeI CATG 3 cut(s) 292, 719, 795
FaiI YATR 8 cut(s) 290, 639, 699, 704, 706, 717, 737, 793
FaqI GGGAC 2 cut(s) 25, 433
FatI CATG 3 cut(s) 288, 715, 791
FbaI TGATCA 1 cut(s) 936
Fnu4HI GCNGC 5 cut(s) 121, 141, 144, 203, 428
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 5 cut(s) 121, 141, 144, 203, 428
FspBI CTAG 1 cut(s) 432
GlaI GCGC 4 cut(s) 201, 494, 564, 675
GluI GCNGC 5 cut(s) 121, 141, 144, 203, 428
GsaI CCCAGC 1 cut(s) 621
GsuI CTGGAG 1 cut(s) 880
HaeII RGCGCY 2 cut(s) 203, 566
HaeIII GGCC 1 cut(s) 185
HapII CCGG 5 cut(s) 182, 192, 206, 245, 611
HhaI GCGC 4 cut(s) 202, 495, 565, 676
Hin1I GRCGYC 3 cut(s) 17, 200, 516
Hin1II CATG 3 cut(s) 292, 719, 795
Hin6I GCGC 4 cut(s) 200, 493, 563, 674
HinP1I GCGC 4 cut(s) 200, 493, 563, 674
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 6 cut(s) 128, 178, 395, 506, 607, 862
HpaII CCGG 5 cut(s) 182, 192, 206, 245, 611
HphI GGTGA 5 cut(s) 57, 256, 350, 602, 812
Hpy166II GTNNAC 2 cut(s) 463, 593
Hpy188I TCNGA 9 cut(s) 127, 177, 334, 351, 394, 400, 559, 754, 911
Hpy188III TCNNGA 5 cut(s) 211, 535, 611, 830, 866
Hpy8I GTNNAC 2 cut(s) 463, 593
Hpy99I CGWCG 5 cut(s) 19, 22, 287, 518, 521
HpyAV CCTTC 4 cut(s) 409, 761, 765, 791
HpyCH4III ACNGT 4 cut(s) 338, 383, 467, 487
HpyCH4IV ACGT 2 cut(s) 17, 516
HpyCH4V TGCA 3 cut(s) 4, 580, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 844, 853
HpyF3I CTNAG 2 cut(s) 753, 943
HpySE526I ACGT 2 cut(s) 17, 516
Hsp92I GRCGYC 3 cut(s) 17, 200, 516
Hsp92II CATG 3 cut(s) 292, 719, 795
HspAI GCGC 4 cut(s) 200, 493, 563, 674
KasI GGCGCC 1 cut(s) 199
Kpn2I TCCGGA 1 cut(s) 610
Ksp22I TGATCA 1 cut(s) 936
Kzo9I GATC 4 cut(s) 329, 554, 911, 936
LmnI GCTCC 5 cut(s) 105, 128, 300, 490, 613
Lsp1109I GCAGC 2 cut(s) 107, 439
LweI GCATC 2 cut(s) 270, 376
MaeI CTAG 1 cut(s) 432
MaeII ACGT 2 cut(s) 17, 516
MaeIII GTNAC 2 cut(s) 299, 359
MalI GATC 4 cut(s) 331, 556, 913, 938
MboI GATC 4 cut(s) 329, 554, 911, 936
MboII GAAGA 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 137, 618, 858
MluCI AATT 3 cut(s) 48, 84, 927
MluI ACGCGT 1 cut(s) 525
Mly113I GGCGCC 1 cut(s) 200
MlyI GAGTC 1 cut(s) 871
MmeI TCCRAC 1 cut(s) 759
MroI TCCGGA 1 cut(s) 610
MseI TTAA 4 cut(s) 23, 651, 815, 887
MspCI CTTAAG 1 cut(s) 886
MspI CCGG 5 cut(s) 182, 192, 206, 245, 611
MspR9I CCNGG 3 cut(s) 245, 246, 627
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 2 cut(s) 844, 853
NarI GGCGCC 1 cut(s) 200
NciI CCSGG 2 cut(s) 245, 246
NdeII GATC 4 cut(s) 329, 554, 911, 936
NlaIII CATG 3 cut(s) 292, 719, 795
NlaIV GGNNCC 3 cut(s) 201, 296, 615
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 719
NspV TTCGAA 1 cut(s) 569
PciI ACATGT 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 5 cut(s) 128, 178, 395, 506, 607
PflMI CCANNNNNTGG 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 625
PkrI GCNGC 5 cut(s) 122, 142, 145, 204, 429
PleI GAGTC 1 cut(s) 870
PluTI GGCGCC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 870
PscI ACATGT 1 cut(s) 715
PsiI TTATAA 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 625
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 3 cut(s) 201, 296, 615
RsaI GTAC 3 cut(s) 230, 242, 455
RsaNI GTAC 3 cut(s) 229, 241, 454
SaqAI TTAA 4 cut(s) 23, 651, 815, 887
SatI GCNGC 5 cut(s) 121, 141, 144, 203, 428
Sau3AI GATC 4 cut(s) 329, 554, 911, 936
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 871
ScrFI CCNGG 3 cut(s) 245, 246, 627
SduI GDGCHC 3 cut(s) 137, 618, 858
SfaNI GCATC 2 cut(s) 270, 376
SfoI GGCGCC 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 569
SmaI CCCGGG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 449, 886
SmoI CTYRAG 2 cut(s) 449, 886
Sse9I AATT 3 cut(s) 48, 84, 927
SsiI CCGC 6 cut(s) 138, 141, 144, 170, 203, 217
SspDI GGCGCC 1 cut(s) 199
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 243, 244, 625
TaaI ACNGT 4 cut(s) 338, 383, 467, 487
TaiI ACGT 2 cut(s) 20, 519
TaqI TCGA 4 cut(s) 131, 321, 569, 865
TasI AATT 3 cut(s) 48, 84, 927
TatI WGTACW 1 cut(s) 453
TauI GCSGC 3 cut(s) 143, 146, 205
TfiI GAWTC 5 cut(s) 128, 178, 395, 506, 607
Tru1I TTAA 4 cut(s) 23, 651, 815, 887
Tru9I TTAA 4 cut(s) 23, 651, 815, 887
TscAI CASTG 2 cut(s) 388, 863
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 120, 427
Tsp45I GTSAC 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 287
TspMI CCCGGG 1 cut(s) 244
TspRI CASTG 2 cut(s) 388, 863
Van91I CCANNNNNTGG 1 cut(s) 162
Vha464I CTTAAG 1 cut(s) 886
XceI RCATGY 1 cut(s) 719
XmaI CCCGGG 1 cut(s) 244
XspI CTAG 1 cut(s) 432
ZraI GACGTC 2 cut(s) 18, 517
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.