Rh6BG432200
NAC Family

inactive heme oxygenase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009205
Physical Location & Seq
Forward (+)
65279286 .. 65280703
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG432200.1

Sequence Viewer

Length: 963 bp
ATGCAATACGCAACGACGTCGTTAATGGACAAAGCGGTGTCCCCATCAATTCTTTACACCCTTTCACCCAAGCCCTCCCCCTCAATTTCAACCAGAAAGCTCCCCTCCCTGTTTCTCTGCTGCTCCGATTCGAGCACCACCGCCGCCTCCACCTCCACTTCTTGGTCTCCGCCTCCGATTCCAGCCACCACCGGCACGGCGCCGCCTGTCGTGAGGCGGAGGACGAGGTACAGGAAGCAGTACCCGGGAGAGAGCAAAGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGGCTCCGTAACAGAAACGGCAAGAAACTCGACCCCCGATCTGACGGTGATGATAGTCAGAGTGAAAGTGACGATAATGCCCCTGACGACAGTGATGCTTCGGAATCTGACGGCGAGGGCGAGGGCGAGAAGGAGACTTGGCAGCCTAGCGTGGAGGGGTTTCTCAAGTACTTGGTGGACAGTAAGCTGGTGTTTGACACCGTGGAGCGCATTGTTGATGATTCAAACGACGTCGCTTACGCGTATTTCAGGAATACTGGATTGGAAAGATCAGAAGCGCTTTCGAAAGATTTGCAATGGTTTGGTGAACAGGGCAATGTGATTCCGGAGCCCAGCAATCCAGGAGTTTCTTATGCCAAGTGTCTTAAACAACTTGCAGAAACTTGTGCGCCATTGTTCCTCTGCCACTTTTATAATATATATTTTTCACATGTATCTGGTGGGCAGGTCATAGCAAGACAGGTATCTGAGAGGCTACTTGAAGGAAGGCAGTTGGAGTTTTACACATGGGAAGGTGATGTGCCAGAGTTAATGAGAGGGGTTCGTGAGAAGCTCAACAAGCTTGGAGAGCACTGGAGTCGAGATGACAAGAACAAATGCTTAAGAGAAACAACCAAGTCATTCCGATCTCTGGGGCAGATAATTCGCCTGATCATCTTAGAAACCAAGTGA

Protein Analysis

320

Amino Acids

35.96

Weight (kDa)

5.65

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 149 - 312 4.8e-11 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26550 AT2G26550 AT2G26550 AT2G26550
fragaria_vesca FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841
malus_domestica MD15G1086700.v1.1
prunus_persica Prupe.1G440300_v2.0.a1
pyrus_communis pycom15g08160
rosa_chinensis RchiOBHm_Chr6g0307211
rosa_laevigata RLG00000010727
rosa_multiflora Rmu_sc0041325.1_g000001
rosa_roxburghii Rroxscaffold_7G00161080
rosa_rugosa Rorug06G0357700
rosa_samantha Rh6AG468300 Rh6BG432200 Rh6CG483500 Rh6DG470100
rosa_wichuraiana Rw6G040800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 705
AatII GACGTC 2 cut(s) 20, 525
Acc36I ACCTGC 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 162
AccII CGCG 1 cut(s) 533
AccIII TCCGGA 1 cut(s) 616
AciI CCGC 6 cut(s) 35, 141, 144, 170, 203, 217
AcyI GRCGYC 3 cut(s) 17, 200, 522
AfaI GTAC 3 cut(s) 230, 242, 461
AfeI AGCGCT 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 162, 922
AflII CTTAAG 1 cut(s) 892
AflIII ACRYGT 2 cut(s) 531, 721
AgsI TTSAA 3 cut(s) 90, 516, 773
AjnI CCWGG 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 4 cut(s) 100, 478, 844, 853
AluI AGCT 4 cut(s) 100, 478, 844, 853
Alw21I GWGCWC 2 cut(s) 137, 864
Alw26I GTCTC 2 cut(s) 171, 419
Ama87I CYCGRG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 616
Aor51HI AGCGCT 1 cut(s) 570
ApeKI GCWGC 2 cut(s) 120, 433
AspLEI GCGC 4 cut(s) 202, 501, 571, 682
AsuC2I CCSGG 2 cut(s) 245, 246
AsuHPI GGTGA 5 cut(s) 57, 256, 350, 608, 818
AsuII TTCGAA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 244
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 137, 864
BbvI GCAGC 2 cut(s) 107, 445
BccI CCATC 1 cut(s) 52
BceAI ACGGC 3 cut(s) 213, 325, 418
BciT130I CCWGG 1 cut(s) 633
BclI TGATCA 1 cut(s) 942
BcnI CCSGG 2 cut(s) 245, 246
BcoDI GTCTC 2 cut(s) 171, 419
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 2 cut(s) 203, 572
BfrI CTTAAG 1 cut(s) 892
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 4 cut(s) 121, 144, 203, 434
BlsI GCNGC 4 cut(s) 122, 145, 204, 435
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 3 cut(s) 245, 246, 633
BmeT110I CYCGRG 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 201, 296, 621
BmrFI CCNGG 3 cut(s) 245, 246, 633
BmsI GCATC 2 cut(s) 270, 376
BpmI CTGGAG 1 cut(s) 886
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 245, 246
BsaHI GRCGYC 3 cut(s) 17, 200, 522
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 244, 492
BsaWI WCCGGW 1 cut(s) 616
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 922
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 553, 869
Bse3DI GCAATG 2 cut(s) 593, 613
BseAI TCCGGA 1 cut(s) 616
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 2 cut(s) 244, 492
BseLI CCNNNNNNNGG 2 cut(s) 162, 922
BseMI GCAATG 2 cut(s) 593, 613
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 2 cut(s) 553, 869
BseXI GCAGC 2 cut(s) 107, 445
BseYI CCCAGC 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 137, 864
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 3 cut(s) 192, 245, 617
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 162, 922
BsmAI GTCTC 2 cut(s) 171, 419
BsmFI GGGAC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 3 cut(s) 137, 624, 864
Bsp13I TCCGGA 1 cut(s) 616
Bsp143I GATC 4 cut(s) 329, 560, 917, 942
BspACI CCGC 6 cut(s) 35, 141, 144, 170, 203, 217
BspCNI CTCAG 1 cut(s) 751
BspEI TCCGGA 1 cut(s) 616
BspFNI CGCG 1 cut(s) 533
BspLI GGNNCC 3 cut(s) 201, 296, 621
BspMI ACCTGC 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 892
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 593, 613
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 2 cut(s) 553, 869
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 244, 492
BssMI GATC 4 cut(s) 329, 560, 917, 942
BssNI GRCGYC 3 cut(s) 17, 200, 522
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 4 cut(s) 338, 383, 473, 493
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 3 cut(s) 17, 200, 522
BstAFI CTTAAG 1 cut(s) 892
BstBI TTCGAA 1 cut(s) 575
BstDEI CTNAG 2 cut(s) 759, 949
BstDSI CCRYGG 1 cut(s) 492
BstFNI CGCG 1 cut(s) 533
BstH2I RGCGCY 2 cut(s) 203, 572
BstHHI GCGC 4 cut(s) 202, 501, 571, 682
BstKTI GATC 4 cut(s) 332, 563, 920, 945
BstMAI GTCTC 2 cut(s) 171, 419
BstMBI GATC 4 cut(s) 329, 560, 917, 942
BstMWI GCNNNNNNNGC 2 cut(s) 850, 859
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 3 cut(s) 243, 244, 631
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 107, 445
BtgI CCRYGG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 388, 862
BveI ACCTGC 1 cut(s) 727
CfoI GCGC 4 cut(s) 202, 501, 571, 682
Cfr10I RCCGGY 1 cut(s) 191
Cfr9I CCCGGG 1 cut(s) 244
Csp6I GTAC 3 cut(s) 229, 241, 460
CviAII CATG 3 cut(s) 289, 722, 798
CviQI GTAC 3 cut(s) 229, 241, 460
DdeI CTNAG 2 cut(s) 759, 949
DinI GGCGCC 1 cut(s) 201
DpnI GATC 4 cut(s) 331, 562, 919, 944
DpnII GATC 4 cut(s) 329, 560, 917, 942
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 2 cut(s) 159, 232
Eco24I GRGCYC 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 171
Eco47III AGCGCT 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 624
EgeI GGCGCC 1 cut(s) 201
EheI GGCGCC 1 cut(s) 201
FaeI CATG 3 cut(s) 292, 725, 801
FaiI YATR 8 cut(s) 290, 645, 705, 710, 712, 723, 743, 799
FaqI GGGAC 1 cut(s) 25
FatI CATG 3 cut(s) 288, 721, 797
FbaI TGATCA 1 cut(s) 942
Fnu4HI GCNGC 4 cut(s) 121, 144, 203, 434
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 4 cut(s) 121, 144, 203, 434
FspBI CTAG 1 cut(s) 438
GlaI GCGC 4 cut(s) 201, 500, 570, 681
GluI GCNGC 4 cut(s) 121, 144, 203, 434
GsaI CCCAGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 886
HaeII RGCGCY 2 cut(s) 203, 572
HapII CCGG 3 cut(s) 192, 245, 617
HhaI GCGC 4 cut(s) 202, 501, 571, 682
Hin1I GRCGYC 3 cut(s) 17, 200, 522
Hin1II CATG 3 cut(s) 292, 725, 801
Hin6I GCGC 4 cut(s) 200, 499, 569, 680
HinP1I GCGC 4 cut(s) 200, 499, 569, 680
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 6 cut(s) 128, 178, 395, 512, 613, 868
HpaII CCGG 3 cut(s) 192, 245, 617
HphI GGTGA 5 cut(s) 57, 256, 350, 608, 818
Hpy166II GTNNAC 2 cut(s) 469, 599
Hpy188I TCNGA 9 cut(s) 127, 177, 334, 351, 394, 400, 565, 760, 917
Hpy188III TCNNGA 5 cut(s) 211, 541, 617, 836, 872
Hpy8I GTNNAC 2 cut(s) 469, 599
Hpy99I CGWCG 5 cut(s) 19, 22, 287, 524, 527
HpyAV CCTTC 4 cut(s) 415, 767, 771, 797
HpyCH4III ACNGT 4 cut(s) 338, 383, 473, 493
HpyCH4IV ACGT 2 cut(s) 17, 522
HpyCH4V TGCA 3 cut(s) 4, 586, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 850, 859
HpyF3I CTNAG 2 cut(s) 759, 949
HpySE526I ACGT 2 cut(s) 17, 522
Hsp92I GRCGYC 3 cut(s) 17, 200, 522
Hsp92II CATG 3 cut(s) 292, 725, 801
HspAI GCGC 4 cut(s) 200, 499, 569, 680
KasI GGCGCC 1 cut(s) 199
Kpn2I TCCGGA 1 cut(s) 616
Ksp22I TGATCA 1 cut(s) 942
Kzo9I GATC 4 cut(s) 329, 560, 917, 942
LmnI GCTCC 5 cut(s) 105, 128, 300, 496, 619
Lsp1109I GCAGC 2 cut(s) 107, 445
LweI GCATC 2 cut(s) 270, 376
MaeI CTAG 1 cut(s) 438
MaeII ACGT 2 cut(s) 17, 522
MaeIII GTNAC 2 cut(s) 299, 359
MalI GATC 4 cut(s) 331, 562, 919, 944
MboI GATC 4 cut(s) 329, 560, 917, 942
MboII GAAGA 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 137, 624, 864
MluCI AATT 3 cut(s) 48, 84, 933
MluI ACGCGT 1 cut(s) 531
Mly113I GGCGCC 1 cut(s) 200
MlyI GAGTC 1 cut(s) 877
MmeI TCCRAC 1 cut(s) 765
MroI TCCGGA 1 cut(s) 616
MseI TTAA 4 cut(s) 23, 657, 821, 893
MspCI CTTAAG 1 cut(s) 892
MspI CCGG 3 cut(s) 192, 245, 617
MspR9I CCNGG 3 cut(s) 245, 246, 633
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 2 cut(s) 850, 859
NarI GGCGCC 1 cut(s) 200
NciI CCSGG 2 cut(s) 245, 246
NdeII GATC 4 cut(s) 329, 560, 917, 942
NlaIII CATG 3 cut(s) 292, 725, 801
NlaIV GGNNCC 3 cut(s) 201, 296, 621
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 725
NspV TTCGAA 1 cut(s) 575
PciI ACATGT 1 cut(s) 721
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 5 cut(s) 128, 178, 395, 512, 613
PflMI CCANNNNNTGG 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 4 cut(s) 122, 145, 204, 435
PleI GAGTC 1 cut(s) 876
PluTI GGCGCC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 876
PscI ACATGT 1 cut(s) 721
PsiI TTATAA 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 3 cut(s) 201, 296, 621
RsaI GTAC 3 cut(s) 230, 242, 461
RsaNI GTAC 3 cut(s) 229, 241, 460
SaqAI TTAA 4 cut(s) 23, 657, 821, 893
SatI GCNGC 4 cut(s) 121, 144, 203, 434
Sau3AI GATC 4 cut(s) 329, 560, 917, 942
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 1 cut(s) 877
ScrFI CCNGG 3 cut(s) 245, 246, 633
SduI GDGCHC 3 cut(s) 137, 624, 864
SfaNI GCATC 2 cut(s) 270, 376
SfoI GGCGCC 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 575
SmaI CCCGGG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 455, 892
SmoI CTYRAG 2 cut(s) 455, 892
Sse9I AATT 3 cut(s) 48, 84, 933
SsiI CCGC 6 cut(s) 35, 141, 144, 170, 203, 217
SspDI GGCGCC 1 cut(s) 199
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 3 cut(s) 243, 244, 631
TaaI ACNGT 4 cut(s) 338, 383, 473, 493
TaiI ACGT 2 cut(s) 20, 525
TaqI TCGA 4 cut(s) 131, 321, 575, 871
TasI AATT 3 cut(s) 48, 84, 933
TatI WGTACW 1 cut(s) 459
TauI GCSGC 2 cut(s) 146, 205
TfiI GAWTC 5 cut(s) 128, 178, 395, 512, 613
Tru1I TTAA 4 cut(s) 23, 657, 821, 893
Tru9I TTAA 4 cut(s) 23, 657, 821, 893
TscAI CASTG 2 cut(s) 388, 869
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 120, 433
Tsp45I GTSAC 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 287
TspMI CCCGGG 1 cut(s) 244
TspRI CASTG 2 cut(s) 388, 869
Van91I CCANNNNNTGG 1 cut(s) 162
Vha464I CTTAAG 1 cut(s) 892
XceI RCATGY 1 cut(s) 725
XmaI CCCGGG 1 cut(s) 244
XspI CTAG 1 cut(s) 438
ZraI GACGTC 2 cut(s) 18, 523
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.