Rmu_sc0041325.1_g000001
NAC Family

inactive heme oxygenase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041325.1
OG0009205
Physical Location & Seq
Reverse (-)
1 .. 969
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041325.1_g000001.1.cds

Sequence Viewer

Length: 587 bp
atgaggctccgtaacagaaacggcaagaaactcgacccccgatctgacggtgatgatactcagagtgaaagtgacgataatgcccctgacgacagtgatgcgtcggaatctgacggcgagaaggaaacttggcagcctagtgtggaggggtttctcaagtacttggtggacagtcagctcgtgtttgacaccgtggagcgcattgttgatgattcaaacgacgtcgcttacgcgtatttcaggaataccggattggaaagatcagaagcgcttgcgaaagatttgcaatggtttggtgaacagggcaatgtgattccggagcccagcaatccaggagtttcttatgccaagtatcttaaacaacttgcagaaacttgtgcgccattgttcctctgccacttttataatatatatttttcacatatatctggtgggcaggtcatagcaagacaggtatctgagaggctacttgaaggaagggagttggagttttacacatgggaaggcgatgtaccagagttaatgagaggggttcgtgagaagctcaacaagcttggagaggttaataacgcctttgatgctatctt

Protein Analysis

195

Amino Acids

22.13

Weight (kDa)

4.48

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26550 AT2G26550 AT2G26550 AT2G26550
fragaria_vesca FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841
malus_domestica MD15G1086700.v1.1
prunus_persica Prupe.1G440300_v2.0.a1
pyrus_communis pycom15g08160
rosa_chinensis RchiOBHm_Chr6g0307211
rosa_laevigata RLG00000010727
rosa_multiflora Rmu_sc0041325.1_g000001
rosa_roxburghii Rroxscaffold_7G00161080
rosa_rugosa Rorug06G0357700
rosa_samantha Rh6AG468300 Rh6BG432200 Rh6CG483500 Rh6DG470100
rosa_wichuraiana Rw6G040800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AatII GACGTC 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 427
AccII CGCG 1 cut(s) 233
AccIII TCCGGA 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 161, 513
AfeI AGCGCT 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 2 cut(s) 216, 473
AjnI CCWGG 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 3 cut(s) 178, 544, 553
AluI AGCT 3 cut(s) 178, 544, 553
Aor13HI TCCGGA 1 cut(s) 316
Aor51HI AGCGCT 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 133
AspLEI GCGC 3 cut(s) 201, 271, 382
AsuHPI GGTGA 2 cut(s) 62, 308
BanII GRGCYC 1 cut(s) 324
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BauI CACGAG 1 cut(s) 179
BbvI GCAGC 1 cut(s) 145
BceAI ACGGC 2 cut(s) 37, 130
BcgI CGANNNNNNTGC 6 cut(s) 13, 47, 80, 114, 265, 299
BciT130I CCWGG 1 cut(s) 333
BfaI CTAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 427
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 8, 321
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 2 cut(s) 88, 568
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 2 cut(s) 248, 316
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bse3DI GCAATG 2 cut(s) 293, 313
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 192
BseMI GCAATG 2 cut(s) 293, 313
BseMII CTCAG 2 cut(s) 74, 450
BseXI GCAGC 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 233
BsiSI CCGG 2 cut(s) 249, 317
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 41, 260
BspCNI CTCAG 2 cut(s) 73, 451
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 8, 321
BspMI ACCTGC 1 cut(s) 427
BsrDI GCAATG 2 cut(s) 293, 313
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 41, 260
BssNI GRCGYC 1 cut(s) 222
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 4 cut(s) 50, 95, 173, 193
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 60, 459
BstDSI CCRYGG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 3 cut(s) 201, 271, 382
BstKTI GATC 2 cut(s) 44, 263
BstMBI GATC 2 cut(s) 41, 260
BstMWI GCNNNNNNNGC 2 cut(s) 550, 578
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 3 cut(s) 201, 271, 382
CseI GACGC 1 cut(s) 90
Csp6I GTAC 2 cut(s) 160, 512
CviAII CATG 1 cut(s) 498
CviJI RGCY 7 cut(s) 7, 136, 178, 322, 466, 544, 553
CviKI_1 RGCY 7 cut(s) 7, 136, 178, 322, 466, 544, 553
CviQI GTAC 2 cut(s) 160, 512
DdeI CTNAG 2 cut(s) 60, 459
DpnI GATC 2 cut(s) 43, 262
DpnII GATC 2 cut(s) 41, 260
Eco24I GRGCYC 1 cut(s) 324
Eco47III AGCGCT 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 1 cut(s) 501
FaiI YATR 8 cut(s) 345, 405, 410, 412, 423, 425, 443, 499
FatI CATG 1 cut(s) 497
Fnu4HI GCNGC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 1 cut(s) 138
GlaI GCGC 3 cut(s) 200, 270, 381
GluI GCNGC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 272
HapII CCGG 2 cut(s) 249, 317
HgaI GACGC 1 cut(s) 90
HhaI GCGC 3 cut(s) 201, 271, 382
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 501
Hin6I GCGC 3 cut(s) 199, 269, 380
HinP1I GCGC 3 cut(s) 199, 269, 380
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 3 cut(s) 107, 212, 313
HpaII CCGG 2 cut(s) 249, 317
HphI GGTGA 2 cut(s) 62, 308
Hpy166II GTNNAC 2 cut(s) 169, 299
Hpy188I TCNGA 6 cut(s) 46, 63, 106, 112, 265, 460
Hpy188III TCNNGA 3 cut(s) 241, 317, 536
Hpy8I GTNNAC 2 cut(s) 169, 299
Hpy99I CGWCG 3 cut(s) 106, 224, 227
HpyAV CCTTC 4 cut(s) 115, 467, 471, 497
HpyCH4III ACNGT 4 cut(s) 50, 95, 173, 193
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 286, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 578
HpyF3I CTNAG 2 cut(s) 60, 459
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 501
HspAI GCGC 3 cut(s) 199, 269, 380
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 2 cut(s) 41, 260
LmnI GCTCC 3 cut(s) 12, 196, 319
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 2 cut(s) 88, 568
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 11, 71
MalI GATC 2 cut(s) 43, 262
MboI GATC 2 cut(s) 41, 260
MhlI GDGCHC 1 cut(s) 324
MluI ACGCGT 1 cut(s) 231
MmeI TCCRAC 2 cut(s) 84, 465
MnlI CCTC 5 cut(s) 139, 401, 456, 521, 553
MroI TCCGGA 1 cut(s) 316
MseI TTAA 3 cut(s) 357, 521, 564
MspI CCGG 2 cut(s) 249, 317
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 550, 578
NdeII GATC 2 cut(s) 41, 260
NlaIII CATG 1 cut(s) 501
NlaIV GGNNCC 2 cut(s) 8, 321
NmuCI GTSAC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 107, 212, 313
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 1 cut(s) 135
PsiI TTATAA 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 8, 321
RsaI GTAC 2 cut(s) 161, 513
RsaNI GTAC 2 cut(s) 160, 512
SaqAI TTAA 3 cut(s) 357, 521, 564
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 41, 260
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 324
SetI ASST 7 cut(s) 180, 225, 441, 456, 546, 555, 564
SfaNI GCATC 2 cut(s) 88, 568
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 4 cut(s) 50, 95, 173, 193
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 33
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 3 cut(s) 107, 212, 313
Tru1I TTAA 3 cut(s) 357, 521, 564
Tru9I TTAA 3 cut(s) 357, 521, 564
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 71
TspRI CASTG 1 cut(s) 100
XspI CTAG 1 cut(s) 138
ZraI GACGTC 1 cut(s) 223
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.