Rw6G040800
NAC Family

inactive heme oxygenase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009205
Physical Location & Seq
Reverse (-)
64574349 .. 64576511
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040800.1

Sequence Viewer

Length: 933 bp
ATGCAATACGCAACGACGTCGTTAATGGACAAAGCGGTGTCCCCATCAATTCTTTACACCCTTTCACCCAAGCCCTCCCCAATTTCAACCAGAAAGCTTCCCTCCCTGTTTCTCTGCTGCTCCGATTCGAGCGCCACCGCCGTCTCCACCTCTTGGTCTCCGCCTCCGATTCCGGCCACCACCGGCACGGCGCCGCCGGTCGTGAGGCGGAGGACGAGGTACAGGAAGCAGTACCCGGGAGAGAGCAAAGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGGCTCCGTAACAGAAACGGCAAGAAACTCGACCCCCGATCTGACGGTGATGATACTCAGAGTGAAAGTGACGACAGTGATGCTTCGGAATCTGACGGCGAGGGCGAGAAGGAGACTTGGCAGCCTAGTGTGGAGGGGTTTCTCAAGTTCTTGGTGGACAGTAAGCTCGTGTTTGACACCGTGGAGCGCATTGTTGATGATTCAAACGACGTCGCTTACGCGTATTTCAGGAATACCGGATTGGAAAGATCAGAAGCGCTTGCGAAAGATTTGCAATGGTTTGGTGAACAGGGCAATGTGATTCCGGAGCCCAGCAATCCAGGAGTTTCTTATGCCAAGTATCTTAAACAACTTGCAGAAACTTGTGCGCCATTGTTCCTCTGCCACTTTTATAATATATATTTTTCACATATATCTGGTGGGCAGGTCATAGCAAGACAGGTATCTGAGAGGCTACTTGAAGGAAGGGAGTTGGAGTTTTACACATGGGAAGGCGATGTGCCAGAGTTAATGAGAGGGGTTCGTGAGAAGCTCAACAAGCTTGGAGAGCACTGGAGTCGAGATGACAAGAACAAATGCCTAAGAGAAACAACCAAGTCATTCCGATCTCTGGGGCAGATAATTCGCCTGATCATCTTAGAAACCAAGTGA

Protein Analysis

310

Amino Acids

35.04

Weight (kDa)

6.07

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 138 - 302 7.6e-12 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26550 AT2G26550 AT2G26550 AT2G26550
fragaria_vesca FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841
malus_domestica MD15G1086700.v1.1
prunus_persica Prupe.1G440300_v2.0.a1
pyrus_communis pycom15g08160
rosa_chinensis RchiOBHm_Chr6g0307211
rosa_laevigata RLG00000010727
rosa_multiflora Rmu_sc0041325.1_g000001
rosa_roxburghii Rroxscaffold_7G00161080
rosa_rugosa Rorug06G0357700
rosa_samantha Rh6AG468300 Rh6BG432200 Rh6CG483500 Rh6DG470100
rosa_wichuraiana Rw6G040800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AatII GACGTC 2 cut(s) 20, 495
Acc36I ACCTGC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 190
AccB7I CCANNNNNTGG 1 cut(s) 153
AccII CGCG 1 cut(s) 503
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 5 cut(s) 35, 138, 161, 194, 208
AcoI YGGCCR 1 cut(s) 174
AcyI GRCGYC 3 cut(s) 17, 191, 492
AfaI GTAC 2 cut(s) 221, 233
AfeI AGCGCT 1 cut(s) 540
AfiI CCNNNNNNNGG 2 cut(s) 153, 892
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 3 cut(s) 87, 486, 743
AjnI CCWGG 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 4 cut(s) 97, 448, 814, 823
AluI AGCT 4 cut(s) 97, 448, 814, 823
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 3 cut(s) 148, 162, 389
Ama87I CYCGRG 1 cut(s) 235
Aor13HI TCCGGA 1 cut(s) 586
Aor51HI AGCGCT 1 cut(s) 540
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 117, 403
AspLEI GCGC 5 cut(s) 134, 193, 471, 541, 652
AsuC2I CCSGG 2 cut(s) 236, 237
AsuHPI GGTGA 4 cut(s) 57, 247, 341, 578
AvaI CYCGRG 1 cut(s) 235
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 594
BauI CACGAG 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 2 cut(s) 104, 415
BccI CCATC 1 cut(s) 52
BceAI ACGGC 4 cut(s) 125, 204, 316, 394
BciT130I CCWGG 1 cut(s) 603
BclI TGATCA 1 cut(s) 912
BcnI CCSGG 2 cut(s) 236, 237
BcoDI GTCTC 3 cut(s) 148, 162, 389
BfaI CTAG 1 cut(s) 408
BfoI RGCGCY 3 cut(s) 135, 194, 542
BfuAI ACCTGC 1 cut(s) 697
BisI GCNGC 3 cut(s) 118, 194, 404
BlsI GCNGC 3 cut(s) 119, 195, 405
Bme1390I CCNGG 3 cut(s) 236, 237, 603
BmeT110I CYCGRG 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 192, 287, 591
BmrFI CCNGG 3 cut(s) 236, 237, 603
BmsI GCATC 2 cut(s) 261, 352
BpmI CTGGAG 1 cut(s) 856
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 2 cut(s) 236, 237
BsaHI GRCGYC 3 cut(s) 17, 191, 492
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 235, 462
BsaWI WCCGGW 2 cut(s) 518, 586
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 892
Bse118I RCCGGY 2 cut(s) 182, 196
Bse1I ACTGG 1 cut(s) 839
Bse3DI GCAATG 2 cut(s) 563, 583
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 235, 462
BseLI CCNNNNNNNGG 2 cut(s) 153, 892
BseMI GCAATG 2 cut(s) 563, 583
BseMII CTCAG 2 cut(s) 353, 720
BseNI ACTGG 1 cut(s) 839
BseXI GCAGC 2 cut(s) 104, 415
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 834
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 6 cut(s) 173, 183, 197, 236, 519, 587
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 153, 892
BsmAI GTCTC 3 cut(s) 148, 162, 389
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 594, 834
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 4 cut(s) 320, 530, 887, 912
BspACI CCGC 5 cut(s) 35, 138, 161, 194, 208
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 352, 721
BspEI TCCGGA 1 cut(s) 586
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 3 cut(s) 192, 287, 591
BspMI ACCTGC 1 cut(s) 697
BspT107I GGYRCC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 563, 583
BsrFI RCCGGY 2 cut(s) 182, 196
BsrI ACTGG 1 cut(s) 839
BssAI RCCGGY 2 cut(s) 182, 196
BssECI CCNNGG 2 cut(s) 235, 462
BssMI GATC 4 cut(s) 320, 530, 887, 912
BssNI GRCGYC 3 cut(s) 17, 191, 492
BssSI CACGAG 1 cut(s) 449
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 4 cut(s) 329, 359, 443, 463
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 3 cut(s) 17, 191, 492
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 4 cut(s) 339, 729, 863, 919
BstDSI CCRYGG 1 cut(s) 462
BstFNI CGCG 1 cut(s) 503
BstH2I RGCGCY 3 cut(s) 135, 194, 542
BstHHI GCGC 5 cut(s) 134, 193, 471, 541, 652
BstKTI GATC 4 cut(s) 323, 533, 890, 915
BstMAI GTCTC 3 cut(s) 148, 162, 389
BstMBI GATC 4 cut(s) 320, 530, 887, 912
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 820, 829
BstNI CCWGG 1 cut(s) 603
BstSCI CCNGG 3 cut(s) 234, 235, 601
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 2 cut(s) 104, 415
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 462
BtgZI GCGATG 1 cut(s) 792
BtsIMutI CAGTG 2 cut(s) 364, 832
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 1 cut(s) 543
CfoI GCGC 5 cut(s) 134, 193, 471, 541, 652
Cfr10I RCCGGY 2 cut(s) 182, 196
Cfr9I CCCGGG 1 cut(s) 235
Csp6I GTAC 2 cut(s) 220, 232
CviAII CATG 2 cut(s) 280, 768
CviQI GTAC 2 cut(s) 220, 232
DdeI CTNAG 4 cut(s) 339, 729, 863, 919
DinI GGCGCC 1 cut(s) 192
DpnI GATC 4 cut(s) 322, 532, 889, 914
DpnII GATC 4 cut(s) 320, 530, 887, 912
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 2 cut(s) 150, 223
Eco24I GRGCYC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 594
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 2 cut(s) 283, 771
FaiI YATR 9 cut(s) 281, 615, 675, 680, 682, 693, 695, 713, 769
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 279, 767
FbaI TGATCA 1 cut(s) 912
Fnu4HI GCNGC 3 cut(s) 118, 194, 404
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 3 cut(s) 118, 194, 404
FspBI CTAG 1 cut(s) 408
GlaI GCGC 5 cut(s) 133, 192, 470, 540, 651
GluI GCNGC 3 cut(s) 118, 194, 404
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 856
HaeII RGCGCY 3 cut(s) 135, 194, 542
HaeIII GGCC 1 cut(s) 176
HapII CCGG 6 cut(s) 173, 183, 197, 236, 519, 587
HhaI GCGC 5 cut(s) 134, 193, 471, 541, 652
Hin1I GRCGYC 3 cut(s) 17, 191, 492
Hin1II CATG 2 cut(s) 283, 771
Hin6I GCGC 5 cut(s) 132, 191, 469, 539, 650
HinP1I GCGC 5 cut(s) 132, 191, 469, 539, 650
HindIII AAGCTT 2 cut(s) 95, 821
HinfI GANTC 6 cut(s) 125, 169, 371, 482, 583, 838
HpaII CCGG 6 cut(s) 173, 183, 197, 236, 519, 587
HphI GGTGA 4 cut(s) 57, 247, 341, 578
Hpy166II GTNNAC 2 cut(s) 439, 569
Hpy188I TCNGA 9 cut(s) 124, 168, 325, 342, 370, 376, 535, 730, 887
Hpy188III TCNNGA 5 cut(s) 202, 511, 587, 806, 842
Hpy8I GTNNAC 2 cut(s) 439, 569
Hpy99I CGWCG 5 cut(s) 19, 22, 278, 494, 497
HpyAV CCTTC 4 cut(s) 385, 737, 741, 767
HpyCH4III ACNGT 4 cut(s) 329, 359, 443, 463
HpyCH4IV ACGT 2 cut(s) 17, 492
HpyCH4V TGCA 3 cut(s) 4, 556, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 820, 829
HpyF3I CTNAG 4 cut(s) 339, 729, 863, 919
HpySE526I ACGT 2 cut(s) 17, 492
Hsp92I GRCGYC 3 cut(s) 17, 191, 492
Hsp92II CATG 2 cut(s) 283, 771
HspAI GCGC 5 cut(s) 132, 191, 469, 539, 650
KasI GGCGCC 1 cut(s) 190
Kpn2I TCCGGA 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 912
Kzo9I GATC 4 cut(s) 320, 530, 887, 912
LmnI GCTCC 4 cut(s) 125, 291, 466, 589
Lsp1109I GCAGC 2 cut(s) 104, 415
LweI GCATC 2 cut(s) 261, 352
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 17, 492
MaeIII GTNAC 2 cut(s) 290, 350
MalI GATC 4 cut(s) 322, 532, 889, 914
MboI GATC 4 cut(s) 320, 530, 887, 912
MboII GAAGA 1 cut(s) 272
MhlI GDGCHC 2 cut(s) 594, 834
MluCI AATT 3 cut(s) 48, 81, 903
MluI ACGCGT 1 cut(s) 501
Mly113I GGCGCC 1 cut(s) 191
MlyI GAGTC 1 cut(s) 847
MmeI TCCRAC 1 cut(s) 735
MroI TCCGGA 1 cut(s) 586
MseI TTAA 3 cut(s) 23, 627, 791
MspI CCGG 6 cut(s) 173, 183, 197, 236, 519, 587
MspR9I CCNGG 3 cut(s) 236, 237, 603
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 820, 829
NarI GGCGCC 1 cut(s) 191
NciI CCSGG 2 cut(s) 236, 237
NdeII GATC 4 cut(s) 320, 530, 887, 912
NlaIII CATG 2 cut(s) 283, 771
NlaIV GGNNCC 3 cut(s) 192, 287, 591
NmuCI GTSAC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PfeI GAWTC 5 cut(s) 125, 169, 371, 482, 583
PflMI CCANNNNNTGG 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 3 cut(s) 119, 195, 405
PleI GAGTC 1 cut(s) 846
PluTI GGCGCC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 846
PsiI TTATAA 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 601
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 192, 287, 591
RsaI GTAC 2 cut(s) 221, 233
RsaNI GTAC 2 cut(s) 220, 232
SaqAI TTAA 3 cut(s) 23, 627, 791
SatI GCNGC 3 cut(s) 118, 194, 404
Sau3AI GATC 4 cut(s) 320, 530, 887, 912
SchI GAGTC 1 cut(s) 847
ScrFI CCNGG 3 cut(s) 236, 237, 603
SduI GDGCHC 2 cut(s) 594, 834
SfaNI GCATC 2 cut(s) 261, 352
SfoI GGCGCC 1 cut(s) 192
SmaI CCCGGG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 3 cut(s) 48, 81, 903
SsiI CCGC 5 cut(s) 35, 138, 161, 194, 208
SspDI GGCGCC 1 cut(s) 190
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 3 cut(s) 234, 235, 601
TaaI ACNGT 4 cut(s) 329, 359, 443, 463
TaiI ACGT 2 cut(s) 20, 495
TaqI TCGA 3 cut(s) 128, 312, 841
TasI AATT 3 cut(s) 48, 81, 903
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 5 cut(s) 125, 169, 371, 482, 583
Tru1I TTAA 3 cut(s) 23, 627, 791
Tru9I TTAA 3 cut(s) 23, 627, 791
TscAI CASTG 2 cut(s) 364, 839
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 117, 403
Tsp45I GTSAC 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 278
TspMI CCCGGG 1 cut(s) 235
TspRI CASTG 2 cut(s) 364, 839
Van91I CCANNNNNTGG 1 cut(s) 153
XmaI CCCGGG 1 cut(s) 235
XspI CTAG 1 cut(s) 408
ZraI GACGTC 2 cut(s) 18, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.