Rorug06G0357700
NAC Family

inactive heme oxygenase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009205
Physical Location & Seq
Forward (+)
50516542 .. 50516769
228 bp
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UTR
Exon/CDS
Intron
Rorug06G0357700.1

Sequence Viewer

Length: 228 bp
ATGGGAAAGAAGAAATCCACCGGTACTGAAAATGAGGGATCTGGAAAACAAAAGGCCACATGGCCGGATGAGGTAGTAGCTATATTTTGTGATATAGCCGTTAAGGAAGTGGCCAAGGGAAACAGACCTAGTACACATTTTGATAAAAAGGGATGGTCAAATGTTATCATGGCCTTTAAGGAGTTAACCAGAAGGGATTACGATAAAAGGCAACTGAAACATAAGTAG

Protein Analysis

75

Amino Acids

8.55

Weight (kDa)

9.76

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 20 - 75 5.6e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26550 AT2G26550 AT2G26550 AT2G26550
fragaria_vesca FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841
malus_domestica MD15G1086700.v1.1
prunus_persica Prupe.1G440300_v2.0.a1
pyrus_communis pycom15g08160
rosa_chinensis RchiOBHm_Chr6g0307211
rosa_laevigata RLG00000010727
rosa_multiflora Rmu_sc0041325.1_g000001
rosa_roxburghii Rroxscaffold_7G00161080
rosa_rugosa Rorug06G0357700
rosa_samantha Rh6AG468300 Rh6BG432200 Rh6CG483500 Rh6DG470100
rosa_wichuraiana Rw6G040800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 2 cut(s) 62, 111
AfaI GTAC 2 cut(s) 25, 133
AgeI ACCGGT 1 cut(s) 20
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AlwI GGATC 1 cut(s) 46
AoxI GGCC 4 cut(s) 54, 62, 111, 171
AsiGI ACCGGT 1 cut(s) 20
BalI TGGCCA 1 cut(s) 113
BccI CCATC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 83
BfaI CTAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 73, 158
BshFI GGCC 4 cut(s) 56, 64, 113, 173
BshTI ACCGGT 1 cut(s) 20
BsiSI CCGG 2 cut(s) 21, 65
BsnI GGCC 4 cut(s) 56, 64, 113, 173
Bsp143I GATC 1 cut(s) 38
BspANI GGCC 4 cut(s) 56, 64, 113, 173
BspPI GGATC 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 73, 158
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 4 cut(s) 56, 64, 113, 173
BtsCI GGATG 2 cut(s) 73, 158
Cfr10I RCCGGY 1 cut(s) 20
Csp6I GTAC 2 cut(s) 24, 132
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 2 cut(s) 60, 169
CviJI RGCY 6 cut(s) 56, 64, 80, 98, 113, 173
CviKI_1 RGCY 6 cut(s) 56, 64, 80, 98, 113, 173
CviQI GTAC 2 cut(s) 24, 132
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
EaeI YGGCCR 2 cut(s) 62, 111
Eco130I CCWWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 2 cut(s) 63, 172
FaiI YATR 5 cut(s) 61, 83, 95, 170, 222
FatI CATG 2 cut(s) 59, 168
FokI GGATG 2 cut(s) 80, 165
FspBI CTAG 1 cut(s) 129
HaeIII GGCC 4 cut(s) 56, 64, 113, 173
HapII CCGG 2 cut(s) 21, 65
Hin1II CATG 2 cut(s) 63, 172
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 2 cut(s) 21, 65
Hpy166II GTNNAC 2 cut(s) 134, 186
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 2 cut(s) 134, 186
HpyAV CCTTC 1 cut(s) 186
Hsp92II CATG 2 cut(s) 63, 172
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 27, 34, 78, 202
MaeI CTAG 1 cut(s) 129
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 113
MluNI TGGCCA 1 cut(s) 113
MnlI CCTC 2 cut(s) 28, 64
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 3 cut(s) 102, 177, 185
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 2 cut(s) 21, 65
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 63, 172
PinAI ACCGGT 1 cut(s) 20
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 2 cut(s) 25, 133
RsaNI GTAC 2 cut(s) 24, 132
SaqAI TTAA 3 cut(s) 102, 177, 185
Sau3AI GATC 1 cut(s) 38
SetI ASST 3 cut(s) 75, 82, 130
SgeI CNNG 8 cut(s) 33, 54, 72, 77, 127, 141, 181, 201
SspMI CTAG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 114
TatI WGTACW 1 cut(s) 131
Tru1I TTAA 3 cut(s) 102, 177, 185
Tru9I TTAA 3 cut(s) 102, 177, 185
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.