Rh6CG483500
NAC Family

inactive heme oxygenase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009205
Physical Location & Seq
Reverse (-)
64990086 .. 64992198
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG483500.1

Sequence Viewer

Length: 963 bp
ATGCAATACGCAACGACGTCGTTAATGGACAAAGCGGTGTCCCCATCAATTCTTTACACCCTTTCACCCAAGCCCTCCCCCTCAATTTCAACCAGAAAGCTCCCCTCCCTGTTTCTCTGCTGCTCCGATTCGAGCACCACCGCCGCCTCCACCTCCACTTCTTGGTCTCCGCCTCCGATTCCAGCCACCACCGGCACGGCGCCGCCTGTCGTGAGGCGGAGGACGAGGTACAGGAAGCAGTACCCGGGAGAGAGCAAAGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGGCTCCGTAACAGAAACGGCAAGAATCTCGACCCCCGATCTGACGGTGATGATAGTCAGAGTGAAAGTGACGATAATGCCCCTGACGACAGTGATGCTTCGGAATCTGACGGCGAGGGCGAGGGCGAGAAGGGGACTTGGCAGCCTAGCGTGGAGGGGTTTCTCAAGTACTTGGTGGACAGTAAGCTGGTGTTTGACACCGTGGAGCGCATTGTTGATGATTCAAACGACGTCGCTTACGCGTATTTCAGGAATACCGGATTGGAAAGATCGGAAGCGCTTTCGAAAGATTTGCAATGGTTTGGTGAACAGGGCAATGTGATTCCGGAGCCCAGCAATCCAGGAGTTTCTTATGCCAAGTGTCTTAAACAACTTGCAGAAACTTGTGCGCCATTGTTCCTCTGCCACTTTTATAATATATATTTTTCACATGTATCTGGTGGGCAGGTCATAGCAAGACAGGTATCTGAGAGGCTACTTGAAGGAAGGCAGTTGGAGTTTTACACATGGGAAGGTGATGTGCCAGAGTTAATGAGAGGGGTTCGTGAGAAGCTCAACAAGCTTGGAGAGCACTGGAGTCGAGATGACAAGAACAAATGCTTAAGAGAAACAACCAAGTCATTCCGATCTCTGGGGCAGATAATTCGCCTGATCATCTTAGAAACCAAGTGA

Protein Analysis

320

Amino Acids

35.88

Weight (kDa)

5.64

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 149 - 312 4.9e-11 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26550 AT2G26550 AT2G26550 AT2G26550
fragaria_vesca FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841
malus_domestica MD15G1086700.v1.1
prunus_persica Prupe.1G440300_v2.0.a1
pyrus_communis pycom15g08160
rosa_chinensis RchiOBHm_Chr6g0307211
rosa_laevigata RLG00000010727
rosa_multiflora Rmu_sc0041325.1_g000001
rosa_roxburghii Rroxscaffold_7G00161080
rosa_rugosa Rorug06G0357700
rosa_samantha Rh6AG468300 Rh6BG432200 Rh6CG483500 Rh6DG470100
rosa_wichuraiana Rw6G040800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 705
AatII GACGTC 2 cut(s) 20, 525
Acc36I ACCTGC 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 162
AccII CGCG 1 cut(s) 533
AccIII TCCGGA 1 cut(s) 616
AciI CCGC 6 cut(s) 35, 141, 144, 170, 203, 217
AcyI GRCGYC 3 cut(s) 17, 200, 522
AfaI GTAC 3 cut(s) 230, 242, 461
AfeI AGCGCT 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 162, 922
AflII CTTAAG 1 cut(s) 892
AflIII ACRYGT 2 cut(s) 531, 721
AgsI TTSAA 3 cut(s) 90, 516, 773
AjnI CCWGG 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 4 cut(s) 100, 478, 844, 853
AluI AGCT 4 cut(s) 100, 478, 844, 853
Alw21I GWGCWC 2 cut(s) 137, 864
Alw26I GTCTC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 616
Aor51HI AGCGCT 1 cut(s) 570
ApeKI GCWGC 2 cut(s) 120, 433
AspLEI GCGC 4 cut(s) 202, 501, 571, 682
AsuC2I CCSGG 2 cut(s) 245, 246
AsuHPI GGTGA 5 cut(s) 57, 256, 350, 608, 818
AsuII TTCGAA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 244
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 137, 864
BbvI GCAGC 2 cut(s) 107, 445
BccI CCATC 1 cut(s) 52
BceAI ACGGC 3 cut(s) 213, 325, 418
BciT130I CCWGG 1 cut(s) 633
BclI TGATCA 1 cut(s) 942
BcnI CCSGG 2 cut(s) 245, 246
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 2 cut(s) 203, 572
BfrI CTTAAG 1 cut(s) 892
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 4 cut(s) 121, 144, 203, 434
BlsI GCNGC 4 cut(s) 122, 145, 204, 435
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 3 cut(s) 245, 246, 633
BmeT110I CYCGRG 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 201, 296, 621
BmrFI CCNGG 3 cut(s) 245, 246, 633
BmsI GCATC 2 cut(s) 270, 376
BpmI CTGGAG 1 cut(s) 886
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 245, 246
BsaHI GRCGYC 3 cut(s) 17, 200, 522
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 244, 492
BsaWI WCCGGW 2 cut(s) 548, 616
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 922
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 869
Bse3DI GCAATG 2 cut(s) 593, 613
BseAI TCCGGA 1 cut(s) 616
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 2 cut(s) 244, 492
BseLI CCNNNNNNNGG 2 cut(s) 162, 922
BseMI GCAATG 2 cut(s) 593, 613
BseMII CTCAG 1 cut(s) 750
BseNI ACTGG 1 cut(s) 869
BseXI GCAGC 2 cut(s) 107, 445
BseYI CCCAGC 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 137, 864
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 4 cut(s) 192, 245, 549, 617
BslFI GGGAC 2 cut(s) 25, 439
BslI CCNNNNNNNGG 2 cut(s) 162, 922
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 25, 439
Bso31I GGTCTC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 3 cut(s) 137, 624, 864
Bsp13I TCCGGA 1 cut(s) 616
Bsp143I GATC 4 cut(s) 329, 560, 917, 942
BspACI CCGC 6 cut(s) 35, 141, 144, 170, 203, 217
BspCNI CTCAG 1 cut(s) 751
BspEI TCCGGA 1 cut(s) 616
BspFNI CGCG 1 cut(s) 533
BspLI GGNNCC 3 cut(s) 201, 296, 621
BspMI ACCTGC 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 892
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 593, 613
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 869
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 244, 492
BssMI GATC 4 cut(s) 329, 560, 917, 942
BssNI GRCGYC 3 cut(s) 17, 200, 522
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 4 cut(s) 338, 383, 473, 493
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 3 cut(s) 17, 200, 522
BstAFI CTTAAG 1 cut(s) 892
BstBI TTCGAA 1 cut(s) 575
BstDEI CTNAG 2 cut(s) 759, 949
BstDSI CCRYGG 1 cut(s) 492
BstFNI CGCG 1 cut(s) 533
BstH2I RGCGCY 2 cut(s) 203, 572
BstHHI GCGC 4 cut(s) 202, 501, 571, 682
BstKTI GATC 4 cut(s) 332, 563, 920, 945
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 4 cut(s) 329, 560, 917, 942
BstMWI GCNNNNNNNGC 2 cut(s) 850, 859
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 3 cut(s) 243, 244, 631
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 107, 445
BtgI CCRYGG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 388, 862
BveI ACCTGC 1 cut(s) 727
CfoI GCGC 4 cut(s) 202, 501, 571, 682
Cfr10I RCCGGY 1 cut(s) 191
Cfr9I CCCGGG 1 cut(s) 244
Csp6I GTAC 3 cut(s) 229, 241, 460
CviAII CATG 3 cut(s) 289, 722, 798
CviQI GTAC 3 cut(s) 229, 241, 460
DdeI CTNAG 2 cut(s) 759, 949
DinI GGCGCC 1 cut(s) 201
DpnI GATC 4 cut(s) 331, 562, 919, 944
DpnII GATC 4 cut(s) 329, 560, 917, 942
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 2 cut(s) 159, 232
Eco24I GRGCYC 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 171
Eco47III AGCGCT 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 624
EgeI GGCGCC 1 cut(s) 201
EheI GGCGCC 1 cut(s) 201
FaeI CATG 3 cut(s) 292, 725, 801
FaiI YATR 8 cut(s) 290, 645, 705, 710, 712, 723, 743, 799
FaqI GGGAC 2 cut(s) 25, 439
FatI CATG 3 cut(s) 288, 721, 797
FbaI TGATCA 1 cut(s) 942
Fnu4HI GCNGC 4 cut(s) 121, 144, 203, 434
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 4 cut(s) 121, 144, 203, 434
FspBI CTAG 1 cut(s) 438
GlaI GCGC 4 cut(s) 201, 500, 570, 681
GluI GCNGC 4 cut(s) 121, 144, 203, 434
GsaI CCCAGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 886
HaeII RGCGCY 2 cut(s) 203, 572
HapII CCGG 4 cut(s) 192, 245, 549, 617
HhaI GCGC 4 cut(s) 202, 501, 571, 682
Hin1I GRCGYC 3 cut(s) 17, 200, 522
Hin1II CATG 3 cut(s) 292, 725, 801
Hin6I GCGC 4 cut(s) 200, 499, 569, 680
HinP1I GCGC 4 cut(s) 200, 499, 569, 680
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 7 cut(s) 128, 178, 316, 395, 512, 613, 868
HpaII CCGG 4 cut(s) 192, 245, 549, 617
HphI GGTGA 5 cut(s) 57, 256, 350, 608, 818
Hpy166II GTNNAC 2 cut(s) 469, 599
Hpy188I TCNGA 9 cut(s) 127, 177, 334, 351, 394, 400, 565, 760, 917
Hpy188III TCNNGA 6 cut(s) 211, 320, 541, 617, 836, 872
Hpy8I GTNNAC 2 cut(s) 469, 599
Hpy99I CGWCG 5 cut(s) 19, 22, 287, 524, 527
HpyAV CCTTC 4 cut(s) 415, 767, 771, 797
HpyCH4III ACNGT 4 cut(s) 338, 383, 473, 493
HpyCH4IV ACGT 2 cut(s) 17, 522
HpyCH4V TGCA 3 cut(s) 4, 586, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 850, 859
HpyF3I CTNAG 2 cut(s) 759, 949
HpySE526I ACGT 2 cut(s) 17, 522
Hsp92I GRCGYC 3 cut(s) 17, 200, 522
Hsp92II CATG 3 cut(s) 292, 725, 801
HspAI GCGC 4 cut(s) 200, 499, 569, 680
KasI GGCGCC 1 cut(s) 199
Kpn2I TCCGGA 1 cut(s) 616
Ksp22I TGATCA 1 cut(s) 942
Kzo9I GATC 4 cut(s) 329, 560, 917, 942
LmnI GCTCC 5 cut(s) 105, 128, 300, 496, 619
Lsp1109I GCAGC 2 cut(s) 107, 445
LweI GCATC 2 cut(s) 270, 376
MaeI CTAG 1 cut(s) 438
MaeII ACGT 2 cut(s) 17, 522
MaeIII GTNAC 2 cut(s) 299, 359
MalI GATC 4 cut(s) 331, 562, 919, 944
MboI GATC 4 cut(s) 329, 560, 917, 942
MboII GAAGA 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 137, 624, 864
MluCI AATT 3 cut(s) 48, 84, 933
MluI ACGCGT 1 cut(s) 531
Mly113I GGCGCC 1 cut(s) 200
MlyI GAGTC 1 cut(s) 877
MmeI TCCRAC 1 cut(s) 765
MroI TCCGGA 1 cut(s) 616
MseI TTAA 4 cut(s) 23, 657, 821, 893
MspCI CTTAAG 1 cut(s) 892
MspI CCGG 4 cut(s) 192, 245, 549, 617
MspR9I CCNGG 3 cut(s) 245, 246, 633
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 2 cut(s) 850, 859
NarI GGCGCC 1 cut(s) 200
NciI CCSGG 2 cut(s) 245, 246
NdeII GATC 4 cut(s) 329, 560, 917, 942
NlaIII CATG 3 cut(s) 292, 725, 801
NlaIV GGNNCC 3 cut(s) 201, 296, 621
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 725
NspV TTCGAA 1 cut(s) 575
PciI ACATGT 1 cut(s) 721
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 6 cut(s) 128, 178, 316, 395, 512, 613
PflMI CCANNNNNTGG 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 4 cut(s) 122, 145, 204, 435
PleI GAGTC 1 cut(s) 876
PluTI GGCGCC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 876
PscI ACATGT 1 cut(s) 721
PsiI TTATAA 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 3 cut(s) 201, 296, 621
RsaI GTAC 3 cut(s) 230, 242, 461
RsaNI GTAC 3 cut(s) 229, 241, 460
SaqAI TTAA 4 cut(s) 23, 657, 821, 893
SatI GCNGC 4 cut(s) 121, 144, 203, 434
Sau3AI GATC 4 cut(s) 329, 560, 917, 942
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 1 cut(s) 877
ScrFI CCNGG 3 cut(s) 245, 246, 633
SduI GDGCHC 3 cut(s) 137, 624, 864
SfaNI GCATC 2 cut(s) 270, 376
SfoI GGCGCC 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 575
SmaI CCCGGG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 455, 892
SmoI CTYRAG 2 cut(s) 455, 892
Sse9I AATT 3 cut(s) 48, 84, 933
SsiI CCGC 6 cut(s) 35, 141, 144, 170, 203, 217
SspDI GGCGCC 1 cut(s) 199
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 3 cut(s) 243, 244, 631
TaaI ACNGT 4 cut(s) 338, 383, 473, 493
TaiI ACGT 2 cut(s) 20, 525
TaqI TCGA 4 cut(s) 131, 321, 575, 871
TasI AATT 3 cut(s) 48, 84, 933
TatI WGTACW 1 cut(s) 459
TauI GCSGC 2 cut(s) 146, 205
TfiI GAWTC 6 cut(s) 128, 178, 316, 395, 512, 613
Tru1I TTAA 4 cut(s) 23, 657, 821, 893
Tru9I TTAA 4 cut(s) 23, 657, 821, 893
TscAI CASTG 2 cut(s) 388, 869
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 120, 433
Tsp45I GTSAC 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 287
TspMI CCCGGG 1 cut(s) 244
TspRI CASTG 2 cut(s) 388, 869
Van91I CCANNNNNTGG 1 cut(s) 162
Vha464I CTTAAG 1 cut(s) 892
XceI RCATGY 1 cut(s) 725
XmaI CCCGGG 1 cut(s) 244
XspI CTAG 1 cut(s) 438
ZraI GACGTC 2 cut(s) 18, 523
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.