Rh6AG468300
NAC Family

inactive heme oxygenase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009205
Physical Location & Seq
Reverse (-)
65064045 .. 65065433
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG468300.1

Sequence Viewer

Length: 942 bp
ATGCAATTCGCAACGACGTCGTTAATGGACAAAGCGGTGTCCCCATCAATTCTTTACACCCTTTCACCCAAGCCCTCCCCAATTTCAACCAGAAAGCTTCCCTCCCTGTTTCTCTGCTGCTCCGATTCGAGCACCACCGCCGTCTCCACCTCTTGGTCTCCTCCTCCGATTCCGGCCACCACCGGCACGGCGCCGCCGGTCGTGAGGCGGAGGACGAGGTACAGGAAGCAGTACCCGGGAGAGAGCAAAGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGGCTCCGTAACAGAAACGGCAAGAAACTCGACCCCCGATCTGACGGTGATGATACTCAGAGTGAAAGTGACGATAATGCCCCTGACGACAGTGATGCGTCGGAATCTGACGGCGAGAAGGAGACTTGGCAGCCTAGTGTGGAGGGGTTGCTCAAGTACTTGGTGGACAGTAAGCTCGTGTTTGACACCGTGGAGCGCATTGTTGATGATTCAAACGACGTCGCTTACGCGTATTTCAGGAATACCGGATTGGAAAGATCAGAAGCGCTTTCGAAAGATTTGCAATGGTTTGGTGAACAGGGCAATGTGATTCCGGAGCCCAGCAATCCAGGAGTTTCTTATGCCAAGTATCTTAAACAAGTTGCAGAAACTTGTGCGCCATTGTTCCTCTGCCACTTTTATAATATATATTTTTCACATATATCTGGTGGGCAGGTCATAGCAAGACAGGTATCTGAGAGGCTACTTGAAGGAAGGGAGTTGGAGTTTTACACATGGGAAGGCGATGTGCCAGAGTTAATGAGAGGGGTTCGTGAGAAGCTCAACAAGCTTGGAGAGCACTGGAGTCGAGATGACAAGAACAAATGCTTAAGAGAAACAACCAAGTCATTCCGATCTCTGGGGCAGATAATTCGCCTGATCATCTTACAAACCAAGTGA

Protein Analysis

313

Amino Acids

35.37

Weight (kDa)

6.06

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 156 - 305 5e-11 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26550 AT2G26550 AT2G26550 AT2G26550
fragaria_vesca FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841 FvH4_2g34841
malus_domestica MD15G1086700.v1.1
prunus_persica Prupe.1G440300_v2.0.a1
pyrus_communis pycom15g08160
rosa_chinensis RchiOBHm_Chr6g0307211
rosa_laevigata RLG00000010727
rosa_multiflora Rmu_sc0041325.1_g000001
rosa_roxburghii Rroxscaffold_7G00161080
rosa_rugosa Rorug06G0357700
rosa_samantha Rh6AG468300 Rh6BG432200 Rh6CG483500 Rh6DG470100
rosa_wichuraiana Rw6G040800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AatII GACGTC 2 cut(s) 20, 504
Acc36I ACCTGC 1 cut(s) 706
AccB1I GGYRCC 1 cut(s) 190
AccB7I CCANNNNNTGG 1 cut(s) 153
AccII CGCG 1 cut(s) 512
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 4 cut(s) 35, 138, 194, 208
AcoI YGGCCR 1 cut(s) 174
AcyI GRCGYC 3 cut(s) 17, 191, 501
AfaI GTAC 3 cut(s) 221, 233, 440
AfeI AGCGCT 1 cut(s) 549
AfiI CCNNNNNNNGG 2 cut(s) 153, 901
AflII CTTAAG 1 cut(s) 871
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 3 cut(s) 87, 495, 752
AjnI CCWGG 1 cut(s) 610
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 4 cut(s) 97, 457, 823, 832
AluI AGCT 4 cut(s) 97, 457, 823, 832
Alw21I GWGCWC 2 cut(s) 134, 843
Alw26I GTCTC 3 cut(s) 148, 162, 398
Ama87I CYCGRG 1 cut(s) 235
Aor13HI TCCGGA 1 cut(s) 595
Aor51HI AGCGCT 1 cut(s) 549
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 117, 412
AspLEI GCGC 4 cut(s) 193, 480, 550, 661
AsuC2I CCSGG 2 cut(s) 236, 237
AsuHPI GGTGA 4 cut(s) 57, 247, 341, 587
AsuII TTCGAA 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 235
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 603
BauI CACGAG 1 cut(s) 458
Bbv12I GWGCWC 2 cut(s) 134, 843
BbvI GCAGC 2 cut(s) 104, 424
BccI CCATC 1 cut(s) 52
BceAI ACGGC 4 cut(s) 125, 204, 316, 409
BciT130I CCWGG 1 cut(s) 612
BclI TGATCA 1 cut(s) 921
BcnI CCSGG 2 cut(s) 236, 237
BcoDI GTCTC 3 cut(s) 148, 162, 398
BfaI CTAG 1 cut(s) 417
BfoI RGCGCY 2 cut(s) 194, 551
BfrI CTTAAG 1 cut(s) 871
BfuAI ACCTGC 1 cut(s) 706
BisI GCNGC 3 cut(s) 118, 194, 413
BlsI GCNGC 3 cut(s) 119, 195, 414
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 3 cut(s) 236, 237, 612
BmeT110I CYCGRG 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 192, 287, 600
BmrFI CCNGG 3 cut(s) 236, 237, 612
BmsI GCATC 2 cut(s) 261, 367
BpmI CTGGAG 1 cut(s) 865
Bpu14I TTCGAA 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 236, 237
BsaHI GRCGYC 3 cut(s) 17, 191, 501
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 235, 471
BsaWI WCCGGW 2 cut(s) 527, 595
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 901
Bse118I RCCGGY 2 cut(s) 182, 196
Bse1I ACTGG 1 cut(s) 848
Bse3DI GCAATG 2 cut(s) 572, 592
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 235, 471
BseLI CCNNNNNNNGG 2 cut(s) 153, 901
BseMI GCAATG 2 cut(s) 572, 592
BseMII CTCAG 2 cut(s) 353, 729
BseNI ACTGG 1 cut(s) 848
BseRI GAGGAG 2 cut(s) 150, 153
BseXI GCAGC 2 cut(s) 104, 424
BseYI CCCAGC 1 cut(s) 602
Bsh1236I CGCG 1 cut(s) 512
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 134, 843
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 6 cut(s) 173, 183, 197, 236, 528, 596
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 153, 901
BsmAI GTCTC 3 cut(s) 148, 162, 398
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 235
Bsp119I TTCGAA 1 cut(s) 554
Bsp1286I GDGCHC 3 cut(s) 134, 603, 843
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 4 cut(s) 320, 539, 896, 921
BspACI CCGC 4 cut(s) 35, 138, 194, 208
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 352, 730
BspEI TCCGGA 1 cut(s) 595
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 3 cut(s) 192, 287, 600
BspMI ACCTGC 1 cut(s) 706
BspT104I TTCGAA 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 190
BspTI CTTAAG 1 cut(s) 871
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 572, 592
BsrFI RCCGGY 2 cut(s) 182, 196
BsrI ACTGG 1 cut(s) 848
BssAI RCCGGY 2 cut(s) 182, 196
BssECI CCNNGG 2 cut(s) 235, 471
BssMI GATC 4 cut(s) 320, 539, 896, 921
BssNI GRCGYC 3 cut(s) 17, 191, 501
BssSI CACGAG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 4 cut(s) 329, 374, 452, 472
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 3 cut(s) 17, 191, 501
BstAFI CTTAAG 1 cut(s) 871
BstBI TTCGAA 1 cut(s) 554
BstDEI CTNAG 2 cut(s) 339, 738
BstDSI CCRYGG 1 cut(s) 471
BstFNI CGCG 1 cut(s) 512
BstH2I RGCGCY 2 cut(s) 194, 551
BstHHI GCGC 4 cut(s) 193, 480, 550, 661
BstKTI GATC 4 cut(s) 323, 542, 899, 924
BstMAI GTCTC 3 cut(s) 148, 162, 398
BstMBI GATC 4 cut(s) 320, 539, 896, 921
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 829, 838
BstNI CCWGG 1 cut(s) 612
BstSCI CCNGG 3 cut(s) 234, 235, 610
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 104, 424
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 801
BtsIMutI CAGTG 2 cut(s) 379, 841
BveI ACCTGC 1 cut(s) 706
CfoI GCGC 4 cut(s) 193, 480, 550, 661
Cfr10I RCCGGY 2 cut(s) 182, 196
Cfr9I CCCGGG 1 cut(s) 235
CseI GACGC 1 cut(s) 369
Csp6I GTAC 3 cut(s) 220, 232, 439
CviAII CATG 2 cut(s) 280, 777
CviQI GTAC 3 cut(s) 220, 232, 439
DdeI CTNAG 2 cut(s) 339, 738
DinI GGCGCC 1 cut(s) 192
DpnI GATC 4 cut(s) 322, 541, 898, 923
DpnII GATC 4 cut(s) 320, 539, 896, 921
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 610
EcoT38I GRGCYC 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 2 cut(s) 283, 780
FaiI YATR 9 cut(s) 281, 624, 684, 689, 691, 702, 704, 722, 778
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 279, 776
FbaI TGATCA 1 cut(s) 921
Fnu4HI GCNGC 3 cut(s) 118, 194, 413
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 3 cut(s) 118, 194, 413
FspBI CTAG 1 cut(s) 417
GlaI GCGC 4 cut(s) 192, 479, 549, 660
GluI GCNGC 3 cut(s) 118, 194, 413
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 865
HaeII RGCGCY 2 cut(s) 194, 551
HaeIII GGCC 1 cut(s) 176
HapII CCGG 6 cut(s) 173, 183, 197, 236, 528, 596
HgaI GACGC 1 cut(s) 369
HhaI GCGC 4 cut(s) 193, 480, 550, 661
Hin1I GRCGYC 3 cut(s) 17, 191, 501
Hin1II CATG 2 cut(s) 283, 780
Hin6I GCGC 4 cut(s) 191, 478, 548, 659
HinP1I GCGC 4 cut(s) 191, 478, 548, 659
HindIII AAGCTT 2 cut(s) 95, 830
HinfI GANTC 6 cut(s) 125, 169, 386, 491, 592, 847
HpaII CCGG 6 cut(s) 173, 183, 197, 236, 528, 596
HphI GGTGA 4 cut(s) 57, 247, 341, 587
Hpy166II GTNNAC 2 cut(s) 448, 578
Hpy188I TCNGA 9 cut(s) 124, 168, 325, 342, 385, 391, 544, 739, 896
Hpy188III TCNNGA 5 cut(s) 202, 520, 596, 815, 851
Hpy8I GTNNAC 2 cut(s) 448, 578
Hpy99I CGWCG 6 cut(s) 19, 22, 278, 385, 503, 506
HpyAV CCTTC 4 cut(s) 394, 746, 750, 776
HpyCH4III ACNGT 4 cut(s) 329, 374, 452, 472
HpyCH4IV ACGT 2 cut(s) 17, 501
HpyCH4V TGCA 3 cut(s) 4, 565, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 829, 838
HpyF3I CTNAG 2 cut(s) 339, 738
HpySE526I ACGT 2 cut(s) 17, 501
Hsp92I GRCGYC 3 cut(s) 17, 191, 501
Hsp92II CATG 2 cut(s) 283, 780
HspAI GCGC 4 cut(s) 191, 478, 548, 659
KasI GGCGCC 1 cut(s) 190
Kpn2I TCCGGA 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 921
Kzo9I GATC 4 cut(s) 320, 539, 896, 921
LmnI GCTCC 4 cut(s) 125, 291, 475, 598
Lsp1109I GCAGC 2 cut(s) 104, 424
LweI GCATC 2 cut(s) 261, 367
MaeI CTAG 1 cut(s) 417
MaeII ACGT 2 cut(s) 17, 501
MaeIII GTNAC 2 cut(s) 290, 350
MalI GATC 4 cut(s) 322, 541, 898, 923
MboI GATC 4 cut(s) 320, 539, 896, 921
MboII GAAGA 1 cut(s) 272
MhlI GDGCHC 3 cut(s) 134, 603, 843
MluCI AATT 4 cut(s) 5, 48, 81, 912
MluI ACGCGT 1 cut(s) 510
Mly113I GGCGCC 1 cut(s) 191
MlyI GAGTC 1 cut(s) 856
MmeI TCCRAC 2 cut(s) 363, 744
MroI TCCGGA 1 cut(s) 595
MseI TTAA 4 cut(s) 23, 636, 800, 872
MspCI CTTAAG 1 cut(s) 871
MspI CCGG 6 cut(s) 173, 183, 197, 236, 528, 596
MspR9I CCNGG 3 cut(s) 236, 237, 612
MvaI CCWGG 1 cut(s) 612
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 2 cut(s) 829, 838
NarI GGCGCC 1 cut(s) 191
NciI CCSGG 2 cut(s) 236, 237
NdeII GATC 4 cut(s) 320, 539, 896, 921
NlaIII CATG 2 cut(s) 283, 780
NlaIV GGNNCC 3 cut(s) 192, 287, 600
NmuCI GTSAC 1 cut(s) 350
NspV TTCGAA 1 cut(s) 554
PfeI GAWTC 5 cut(s) 125, 169, 386, 491, 592
PflMI CCANNNNNTGG 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 3 cut(s) 119, 195, 414
PleI GAGTC 1 cut(s) 855
PluTI GGCGCC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 855
PsiI TTATAA 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 3 cut(s) 192, 287, 600
RsaI GTAC 3 cut(s) 221, 233, 440
RsaNI GTAC 3 cut(s) 220, 232, 439
SaqAI TTAA 4 cut(s) 23, 636, 800, 872
SatI GCNGC 3 cut(s) 118, 194, 413
Sau3AI GATC 4 cut(s) 320, 539, 896, 921
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 1 cut(s) 856
ScrFI CCNGG 3 cut(s) 236, 237, 612
SduI GDGCHC 3 cut(s) 134, 603, 843
SfaNI GCATC 2 cut(s) 261, 367
SfoI GGCGCC 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 554
SmaI CCCGGG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 434, 871
SmoI CTYRAG 2 cut(s) 434, 871
Sse9I AATT 4 cut(s) 5, 48, 81, 912
SsiI CCGC 4 cut(s) 35, 138, 194, 208
SspDI GGCGCC 1 cut(s) 190
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 234, 235, 610
TaaI ACNGT 4 cut(s) 329, 374, 452, 472
TaiI ACGT 2 cut(s) 20, 504
TaqI TCGA 4 cut(s) 128, 312, 554, 850
TasI AATT 4 cut(s) 5, 48, 81, 912
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 5 cut(s) 125, 169, 386, 491, 592
Tru1I TTAA 4 cut(s) 23, 636, 800, 872
Tru9I TTAA 4 cut(s) 23, 636, 800, 872
TscAI CASTG 2 cut(s) 379, 848
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 117, 412
Tsp45I GTSAC 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 278
TspMI CCCGGG 1 cut(s) 235
TspRI CASTG 2 cut(s) 379, 848
Van91I CCANNNNNTGG 1 cut(s) 153
Vha464I CTTAAG 1 cut(s) 871
XmaI CCCGGG 1 cut(s) 235
XspI CTAG 1 cut(s) 417
ZraI GACGTC 2 cut(s) 18, 502
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.