FvH4_2g37420

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015562
Physical Location & Seq
Forward (+)
27279658 .. 27281273
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37420.t1

Sequence Viewer

Length: 795 bp
ATGGAGATTGATCTTACACCAAGGTTGGCTAAGCAGGTTTATGGAGGAGATGGTGGTTCCTACTCTGCATGGTCCCCATCGGAGCTTCCCATGCTACGTGAAGGTGACATCGGAGCTGCCAAGCTCTCTCTGGAGAAGGACGGCTTCGCTCTCCCCAATTACTCTGACTCTGCCAGAGTTGCTTATGTCCTTCAAGGTAATGGAGTAGTCGGGATTGTTCTGCCCGAAAAGGAAGAGAAGGTTCTCCCTGTTAAGAAGGGTGATGCTCTAGCTCTCCCTTTTGGTGTTATCACTTGGTGGCACAATAGGGAGGATACTGAGTTTGTGGTTCTTTTCTTGGGTGACACTAAAACAGGTCACAAAAGAGGAGAGTTCACTGATATGTATCTCAATGGTTCCAATGGAATCTTCACCGGCTTCTCAACTGAGTTTGTCAGCCGAGCATGGGATTTGGAGGAGAGTGTTGTGAAAACTCTTGTTGGCAACCAAAGCGGGAAGGGCATTGTTAAGTTGGGAGGAGCTAATCTGCCTGAACCGAACAAGGAACATAGAGATGGGATGACATTGAACTGCGAAGAGGCTCCTCTTGATGTTGATATTGAGGGAGGTGGAAGAGTTGTTGTTTTGAACACTAAGAACCTACCTCTGGTGGGTGAGGTTGGCCTTGGCGCCGATCTTGTGAGATTGGATGGCTTGGAATGGTTCTCCATCATCACCACTCCCAATCCAATTTTCACTCATTTGGCTGGAAGTATTGGTGCTTGGAAGGCGTTATCTCCTCAGTCTGTATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

265

Amino Acids

28.41

Weight (kDa)

4.89

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 11 - 156 1.7e-22 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 668
AciI CCGC 1 cut(s) 492
AcyI GRCGYC 1 cut(s) 669
AdeI CACNNNGTG 1 cut(s) 297
AfiI CCNNNNNNNGG 3 cut(s) 445, 646, 650
AgsI TTSAA 3 cut(s) 194, 568, 628
AjuI GAANNNNNNNTTGG 4 cut(s) 392, 424, 716, 748
AluBI AGCT 5 cut(s) 85, 116, 124, 272, 521
AluI AGCT 5 cut(s) 85, 116, 124, 272, 521
AoxI GGCC 1 cut(s) 661
ApeKI GCWGC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 6 cut(s) 116, 272, 353, 403, 665, 706
AvaII GGWCC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 668
BbvI GCAGC 1 cut(s) 103
BccI CCATC 5 cut(s) 44, 85, 548, 683, 716
BceAI ACGGC 1 cut(s) 157
BciVI GTATCC 1 cut(s) 307
BfaI CTAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 25
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 1 cut(s) 117
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 5 cut(s) 58, 74, 397, 582, 670
BmsI GCATC 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 152
Bpu1102I GCTNAGC 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 669
BsaJI CCNNGG 2 cut(s) 20, 664
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 646, 650
Bse118I RCCGGY 1 cut(s) 413
Bse8I GATNNNNATC 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 20, 664
BseGI GGATG 2 cut(s) 564, 694
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 3 cut(s) 445, 646, 650
BseMII CTCAG 3 cut(s) 309, 417, 794
BseRI GAGGAG 6 cut(s) 60, 381, 470, 531, 573, 768
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 663
BshNI GGYRCC 1 cut(s) 668
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 3 cut(s) 445, 646, 650
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 663
Bsp143I GATC 2 cut(s) 10, 673
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 492
BspANI GGCC 1 cut(s) 663
BspCNI CTCAG 3 cut(s) 310, 418, 793
BspLI GGNNCC 5 cut(s) 58, 74, 397, 582, 670
BspMI ACCTGC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 20, 664
BssMI GATC 2 cut(s) 10, 673
BssNI GRCGYC 1 cut(s) 669
BssT1I CCWWGG 2 cut(s) 20, 664
Bst6I CTCTTC 3 cut(s) 228, 570, 607
BstACI GRCGYC 1 cut(s) 669
BstBAI YACGTR 1 cut(s) 98
BstDEI CTNAG 5 cut(s) 30, 318, 426, 633, 780
BstF5I GGATG 2 cut(s) 564, 694
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 2 cut(s) 13, 676
BstMBI GATC 2 cut(s) 10, 673
BstMWI GCNNNNNNNGC 5 cut(s) 91, 179, 489, 498, 767
BstV1I GCAGC 1 cut(s) 103
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 663
BtsCI GGATG 2 cut(s) 564, 694
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 25
CfoI GCGC 1 cut(s) 671
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 72
CviAII CATG 3 cut(s) 69, 91, 444
DdeI CTNAG 5 cut(s) 30, 318, 426, 633, 780
DinI GGCGCC 1 cut(s) 670
DpnI GATC 2 cut(s) 12, 675
DpnII GATC 2 cut(s) 10, 673
DraIII CACNNNGTG 1 cut(s) 297
Eam1104I CTCTTC 3 cut(s) 228, 570, 607
EarI CTCTTC 3 cut(s) 228, 570, 607
Eco130I CCWWGG 2 cut(s) 20, 664
Eco47I GGWCC 1 cut(s) 72
EcoT14I CCWWGG 2 cut(s) 20, 664
EgeI GGCGCC 1 cut(s) 670
EheI GGCGCC 1 cut(s) 670
ErhI CCWWGG 2 cut(s) 20, 664
FaeI CATG 3 cut(s) 72, 94, 447
FaiI YATR 7 cut(s) 42, 70, 92, 186, 383, 445, 549
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 68, 90, 443
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 571, 701
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 269
GlaI GCGC 1 cut(s) 670
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 1 cut(s) 663
HapII CCGG 1 cut(s) 414
HhaI GCGC 1 cut(s) 671
Hin1I GRCGYC 1 cut(s) 669
Hin1II CATG 3 cut(s) 72, 94, 447
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HinfI GANTC 2 cut(s) 167, 405
HpaII CCGG 1 cut(s) 414
HphI GGTGA 6 cut(s) 116, 272, 353, 403, 665, 706
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 3 cut(s) 82, 113, 166
Hpy188III TCNNGA 3 cut(s) 131, 211, 587
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 7 cut(s) 95, 130, 200, 232, 250, 490, 760
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 179, 489, 498, 767
HpyF3I CTNAG 5 cut(s) 30, 318, 426, 633, 780
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 669
Hsp92II CATG 3 cut(s) 72, 94, 447
HspAI GCGC 1 cut(s) 669
KasI GGCGCC 1 cut(s) 668
Kzo9I GATC 2 cut(s) 10, 673
LmnI GCTCC 4 cut(s) 82, 113, 518, 586
LpnPI CCDG 9 cut(s) 20, 116, 187, 261, 339, 427, 543, 632, 732
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 104, 341, 356
MalI GATC 2 cut(s) 12, 675
MboI GATC 2 cut(s) 10, 673
MboII GAAGA 4 cut(s) 245, 400, 587, 624
MluCI AATT 2 cut(s) 157, 729
Mly113I GGCGCC 1 cut(s) 669
MlyI GAGTC 1 cut(s) 161
MseI TTAA 2 cut(s) 252, 507
MslI CAYNNNNRTG 2 cut(s) 380, 552
MspI CCGG 1 cut(s) 414
MwoI GCNNNNNNNGC 5 cut(s) 91, 179, 489, 498, 767
NarI GGCGCC 1 cut(s) 669
NdeII GATC 2 cut(s) 10, 673
NlaIII CATG 3 cut(s) 72, 94, 447
NlaIV GGNNCC 5 cut(s) 58, 74, 397, 582, 670
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 3 cut(s) 104, 341, 356
PfeI GAWTC 1 cut(s) 405
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 161
PluTI GGCGCC 1 cut(s) 672
PpsI GAGTC 1 cut(s) 161
Ppu21I YACGTR 1 cut(s) 98
PspN4I GGNNCC 5 cut(s) 58, 74, 397, 582, 670
PspPI GGNCC 1 cut(s) 72
RseI CAYNNNNRTG 2 cut(s) 380, 552
SaqAI TTAA 2 cut(s) 252, 507
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 10, 673
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 161
SfaNI GCATC 1 cut(s) 253
SfoI GGCGCC 1 cut(s) 670
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 2 cut(s) 380, 552
Sse9I AATT 2 cut(s) 157, 729
SsiI CCGC 1 cut(s) 492
SspDI GGCGCC 1 cut(s) 668
SspMI CTAG 1 cut(s) 269
StyI CCWWGG 2 cut(s) 20, 664
TaiI ACGT 1 cut(s) 100
TasI AATT 2 cut(s) 157, 729
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 2 cut(s) 252, 507
Tru9I TTAA 2 cut(s) 252, 507
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 3 cut(s) 104, 341, 356
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 104, 341, 356
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.