Rh7DG074900

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015562
Physical Location & Seq
Forward (+)
5824178 .. 5825882
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG074900.1

Sequence Viewer

Length: 318 bp
ATGGCTTCTCCGATTCATGGTGTGCAGAACCTCTCGGGCTCTCTGCCAAGGAACAAGGAAATGGAGATTGATCTTACACTAAGGTTGGCTAAGAAAGTTTATGGAGGAGATGGTGGTTCCTACCCTGCCTGGTCTCCGTCGGAGCTTCCCATGCTTCGTGAAGGTGACATCGGAGCTGCCCAGCTCTCTCTAGAGAAGGATGGCCTTGCTCTCCCCAATTACTCTGACTTTGCCAGAGTTGCATATGTCCTTCAAGGTAATGGAGTAGTTGGAATTGTTCTGCCGGAGAAGGAAGAAAAGGTTCTTCCAGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

105

Amino Acids

11.26

Weight (kDa)

5.33

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 30 - 100 8.5e-11 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 254
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 3 cut(s) 145, 176, 184
AluI AGCT 3 cut(s) 145, 176, 184
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 34
BanII GRGCYC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 104, 194
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 204
Bso31I GGTCTC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 80, 90
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 151, 239
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 315
CviAII CATG 2 cut(s) 17, 151
CviJI RGCY 7 cut(s) 5, 39, 89, 145, 176, 184, 204
CviKI_1 RGCY 7 cut(s) 5, 39, 89, 145, 176, 184, 204
DdeI CTNAG 2 cut(s) 80, 90
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 2 cut(s) 20, 154
FaiI YATR 5 cut(s) 18, 102, 152, 244, 246
FatI CATG 2 cut(s) 16, 150
FauNDI CATATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 1 cut(s) 204
HapII CCGG 1 cut(s) 284
Hin1II CATG 2 cut(s) 20, 154
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 4 cut(s) 12, 142, 173, 226
Hpy188III TCNNGA 2 cut(s) 158, 191
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 4 cut(s) 155, 190, 260, 283
HpyCH4V TGCA 2 cut(s) 25, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 239
HpyF3I CTNAG 2 cut(s) 80, 90
Hsp92II CATG 2 cut(s) 20, 154
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 142, 173
LpnPI CCDG 6 cut(s) 115, 138, 142, 194, 247, 297
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 296, 305
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 217, 273
MmeI TCCRAC 2 cut(s) 120, 250
MnlI CCTC 2 cut(s) 41, 98
MroXI GAANNNNTTC 1 cut(s) 300
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 151, 239
NdeI CATATG 1 cut(s) 244
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 20, 154
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 118
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 41
SetI ASST 8 cut(s) 33, 86, 147, 166, 178, 186, 259, 303
Sse9I AATT 2 cut(s) 217, 273
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 47
TasI AATT 2 cut(s) 217, 273
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 315
XbaI TCTAGA 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.