Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8222318.1

Orthogroup ID

OG0015562

Physical Location & Seq

Genomic Coordinates Forward (+)

36 .. 742

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8222318.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 236 bp

atggatattgatcttgcaccaaagttggccaagaaggtttatggaggagatggaggttcttactttgcttggtgcccatcggagcttcccatgctccgtgaaggtaacatcggcgcggccaagctcgcccttgagaagaacggctttgctctccccaattactctgattctgccagagttgcttatatcctccaaggaagtggtgttgttggaattgtcctcccggagaaggaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

78

Amino Acids

8.27

Weight (kDa)

5.31

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37420
rosa_chinensis	RchiOBHm_Chr4g0444011 RchiOBHm_Chr7g0185521
rosa_multiflora	Rmu_co8222318.1_g000001 Rmu_sc0010190.1_g000015
rosa_roxburghii	Rroxscaffold_3G00268850
rosa_rugosa	Rorug04G0348900 Rorug07G0020800
rosa_samantha	Rh4CG435000 Rh4DG415900 Rh7AG072700 Rh7BG075000 Rh7BG148800 Rh7BG148900 Rh7CG075100 Rh7DG074900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AccII	CGCG	1 cut(s)	116
AciI	CCGC	1 cut(s)	116
AcoI	YGGCCR	2 cut(s)	27, 117
AfiI	CCNNNNNNNGG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	85, 124
AluI	AGCT	2 cut(s)	85, 124
AoxI	GGCC	2 cut(s)	27, 117
AspLEI	GCGC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	72
BccI	CCATC	2 cut(s)	44, 85
BceAI	ACGGC	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	29, 119
BshNI	GGYRCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	229
BsnI	GGCC	2 cut(s)	29, 119
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	29, 119
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 125, 179
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	29, 119
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	116
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	5 cut(s)	29, 85, 119, 124, 144
CviKI_1	RGCY	5 cut(s)	29, 85, 119, 124, 144
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EaeI	YGGCCR	2 cut(s)	27, 117
Eco130I	CCWWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	42, 92, 186
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	29, 119
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	82, 166
HpyAV	CCTTC	3 cut(s)	28, 95, 223
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 125, 179
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	82, 99
LpnPI	CCDG	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	2 cut(s)	157, 213
MluNI	TGGCCA	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	4 cut(s)	38, 47, 200, 230
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	29
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	91, 125, 179
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	74
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	5 cut(s)	39, 58, 87, 106, 126
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	157, 213
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	193
TasI	AATT	2 cut(s)	157, 213
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.