Rh4CG435000

Glutelin type-A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015562
Physical Location & Seq
Reverse (-)
67358540 .. 67359622
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG435000.1

Sequence Viewer

Length: 366 bp
ATGCTCTGTGAATGCAACATTAGAGCTGCCAAGCTCTCTCTAGAGAATGATGGCTTTGCTCTTCCCAAGTACTCCGACTCTACCAGAGTTGCTTATGTTCTTCAAGGTAATGGAGTAGTCGGAATTTTTTTGCCGAAGAAGGAAGAAAAGGTTCTTCCACTGAATAAGGGTGATGCTATTGCCCTCCTTTTTGGAGTTATCACTTCATGGCACAACAAGGAGGACACTGAGTTTGTGGTTCTTTTCTTGGGTGAAACCAAAACATCTCACAAAGAGGTGAGTTCACTAATTTCTATCTCAATAGTTCTAATGGCCGAATTTTCACTGGCTTCTCAACTGAGTTTGTTGGCTGAGCATGGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

121

Amino Acids

13.21

Weight (kDa)

5.56

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 3 - 111 1.3e-13 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 2 cut(s) 123, 317
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 2 cut(s) 26, 34
AluI AGCT 2 cut(s) 26, 34
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 2 cut(s) 123, 317
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
Asp700I GAANNNNTTC 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 182, 263, 289
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 44
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 28
BmcAI AGTACT 1 cut(s) 71
BmsI GCATC 1 cut(s) 163
Bpu1102I GCTNAGC 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 330
BseMII CTCAG 3 cut(s) 219, 329, 342
BseNI ACTGG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 1 cut(s) 314
Bsp1720I GCTNAGC 1 cut(s) 351
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 3 cut(s) 220, 330, 343
BspQI GCTCTTC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 228, 338, 351
BstV1I GCAGC 1 cut(s) 13
BsuRI GGCC 1 cut(s) 314
BtsIMutI CAGTG 3 cut(s) 158, 225, 323
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 207, 356
CviJI RGCY 6 cut(s) 26, 34, 54, 314, 329, 350
CviKI_1 RGCY 6 cut(s) 26, 34, 54, 314, 329, 350
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 3 cut(s) 228, 338, 351
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
FaeI CATG 2 cut(s) 210, 359
FaiI YATR 3 cut(s) 96, 208, 357
FatI CATG 2 cut(s) 206, 355
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 314
Hin1II CATG 2 cut(s) 210, 359
HinfI GANTC 1 cut(s) 77
HphI GGTGA 3 cut(s) 182, 263, 289
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 76, 122
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 15
HpyF3I CTNAG 3 cut(s) 228, 338, 351
Hsp92II CATG 2 cut(s) 210, 359
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 2 cut(s) 97, 311
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 41
MboII GAAGA 5 cut(s) 53, 92, 146, 148, 155
MluCI AATT 3 cut(s) 123, 288, 317
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 99, 100
MnlI CCTC 3 cut(s) 194, 214, 268
MroXI GAANNNNTTC 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 17
NlaIII CATG 2 cut(s) 210, 359
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 66
SatI GCNGC 1 cut(s) 27
ScaI AGTACT 1 cut(s) 71
SchI GAGTC 1 cut(s) 71
SetI ASST 5 cut(s) 28, 36, 109, 153, 279
SfaNI GCATC 1 cut(s) 163
SgeI CNNG 9 cut(s) 43, 53, 79, 96, 116, 219, 229, 259, 338
Sse9I AATT 3 cut(s) 123, 288, 317
SspMI CTAG 1 cut(s) 41
TasI AATT 3 cut(s) 123, 288, 317
TatI WGTACW 1 cut(s) 69
TscAI CASTG 3 cut(s) 165, 232, 330
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 3 cut(s) 165, 232, 330
XapI RAATTY 2 cut(s) 123, 317
XbaI TCTAGA 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 41
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.